RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 TBC1D9Q6ZT07 1266 aa10.21□□□□□ -0.78
CPNE4-211ENST00000514439 HMMRO75330 724 aa10.2□□□□□ -0.78
CPNE4-211ENST00000514439 RBM25P49756 843 aaKnown RBP10.2□□□□□ -0.78
CPNE4-211ENST00000514439 PLEKHO1Q53GL0 409 aaPredicted RBP10.2□□□□□ -0.78
CPNE4-211ENST00000514439 HDGFL1Q5TGJ6 251 aa10.2□□□□□ -0.78
CPNE4-211ENST00000514439 ANKRD24Q8TF21 1146 aa10.2□□□□□ -0.78
CPNE4-211ENST00000514439 BCL11AQ9H165 835 aa10.2□□□□□ -0.78
CPNE4-211ENST00000514439 PXDNQ92626 1479 aa10.2□□□□□ -0.78
CPNE4-211ENST00000514439 AKAP4Q5JQC9 854 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 C16orf71Q8IYS4 520 aaPredicted RBP10.19□□□□□ -0.78
CPNE4-211ENST00000514439 OTUD7AQ8TE49 926 aaPredicted RBP10.19□□□□□ -0.78
CPNE4-211ENST00000514439 MST1RQ04912 1400 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 LMO7Q8WWI1 1683 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 SMARCA5O60264 1052 aaPredicted RBP10.19□□□□□ -0.78
CPNE4-211ENST00000514439 CDC45O75419 566 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 GNAI2P04899 355 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 EIF4A1P60842 406 aaKnown RBP10.19□□□□□ -0.78
CPNE4-211ENST00000514439 AMOTQ4VCS5 1084 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 TTC22Q5TAA0 569 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 ANTXR1Q9H6X2 564 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 AXIN2Q9Y2T1 843 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 PXDNLA1KZ92 1463 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 TMEM94Q12767 1356 aa10.19□□□□□ -0.78
CPNE4-211ENST00000514439 DCAF8L1A6NGE4 600 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 APBB1O00213 710 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 FRAT2O75474 233 aaPredicted RBP10.18□□□□□ -0.78
CPNE4-211ENST00000514439 MPRIPQ6WCQ1 1025 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 GNAI3P08754 354 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 TEFQ10587 303 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 PHAXQ9H814 394 aaKnown RBP10.18□□□□□ -0.78
CPNE4-211ENST00000514439 CAMTA1Q9Y6Y1 1673 aa10.18□□□□□ -0.78
CPNE4-211ENST00000514439 KDM3BQ7LBC6 1761 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 KCNQ3O43525 872 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 HOXB7P09629 217 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 ATF3P18847 181 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 ALS2Q96Q42 1657 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 CACNA1FO60840 1977 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 BTBD11A6QL63 1104 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 RNMTO43148 476 aaKnown RBP10.17□□□□□ -0.78
CPNE4-211ENST00000514439 EIF2S2P20042 333 aaKnown RBP10.17□□□□□ -0.78
CPNE4-211ENST00000514439 C1orf141Q5JVX7 400 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 DCCP43146 1447 aa10.17□□□□□ -0.78
CPNE4-211ENST00000514439 ERBB3P21860 1342 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 N4BP2Q86UW6 1770 aaPredicted RBP10.16□□□□□ -0.78
CPNE4-211ENST00000514439 OVOS2A0A0G2JMS6 1433 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 ZC3H6P61129 1189 aaKnown RBP10.16□□□□□ -0.78
CPNE4-211ENST00000514439 HSCBQ8IWL3 235 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 SPRYD3Q8NCJ5 442 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 DDX17Q92841 729 aaKnown RBP10.16□□□□□ -0.78
CPNE4-211ENST00000514439 KIF2CQ99661 725 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 CHPF2Q9P2E5 772 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 LRRFIP2Q9Y608 721 aaKnown RBP10.16□□□□□ -0.78
CPNE4-211ENST00000514439 STRCP1A6NGW2 1772 aa10.16□□□□□ -0.78
CPNE4-211ENST00000514439 PNMA6EA0A0J9YXQ4 647 aa10.15□□□□□ -0.78
CPNE4-211ENST00000514439 USP44Q9H0E7 712 aa10.15□□□□□ -0.78
CPNE4-211ENST00000514439 DNAJC5Q9H3Z4 198 aa10.15□□□□□ -0.78
CPNE4-211ENST00000514439 EXOC6BQ9Y2D4 811 aa10.15□□□□□ -0.78
CPNE4-211ENST00000514439 SDSP20132 328 aa10.15□□□□□ -0.79
CPNE4-211ENST00000514439 ATP8B2P98198 1209 aa10.15□□□□□ -0.79
CPNE4-211ENST00000514439 NCOA3Q9Y6Q9 1424 aa10.14□□□□□ -0.79
CPNE4-211ENST00000514439 UBTFL1P0CB47 393 aaPredicted RBP10.14□□□□□ -0.79
CPNE4-211ENST00000514439 SNX21Q969T3 373 aa10.14□□□□□ -0.79
CPNE4-211ENST00000514439 CHMP4AQ9BY43 222 aa10.14□□□□□ -0.79
CPNE4-211ENST00000514439 LMTK3Q96Q04 1460 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 SRCIN1Q9C0H9 1055 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 RGPD5Q99666 1765 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 IBTKQ9P2D0 1353 aaPredicted RBP10.13□□□□□ -0.79
CPNE4-211ENST00000514439 ANXA1P04083 346 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 PDE1AP54750 535 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 LRRCC1Q9C099 1032 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 OSBPL3Q9H4L5 887 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 NPHP3Q7Z494 1330 aa10.13□□□□□ -0.79
CPNE4-211ENST00000514439 EIF5BO60841 1220 aaKnown RBP10.12□□□□□ -0.79
CPNE4-211ENST00000514439 HSPA2P54652 639 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 CADPS2Q86UW7 1296 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 DNAAF4Q8WXU2 420 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 NLRP2Q9NX02 1062 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 TNS3Q68CZ2 1445 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 SALL3Q9BXA9 1300 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 HEG1Q9ULI3 1381 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 PI4KAP2A4QPH2 592 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 GIGYF1O75420 1035 aaPredicted RBP10.12□□□□□ -0.79
CPNE4-211ENST00000514439 BEND3Q5T5X7 828 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 PI4KAP1Q8N8J0 262 aa10.12□□□□□ -0.79
CPNE4-211ENST00000514439 ADCY9O60503 1353 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 GSE1Q14687 1217 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 CABLES1Q8TDN4 633 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 RAPGEF4Q8WZA2 1011 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 CHMP5Q9NZZ3 219 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 DBF4Q9UBU7 674 aaPredicted RBP10.11□□□□□ -0.79
CPNE4-211ENST00000514439 ADAMTS7Q9UKP4 1686 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 CD2BP2O95400 341 aaKnown RBP10.11□□□□□ -0.79
CPNE4-211ENST00000514439 TSHZ3Q63HK5 1081 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 CASC1Q6TDU7 716 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 SSH3Q8TE77 659 aa10.11□□□□□ -0.79
CPNE4-211ENST00000514439 RBM42Q9BTD8 480 aaKnown RBP10.11□□□□□ -0.79
CPNE4-211ENST00000514439 SIPA1L3O60292 1781 aaPredicted RBP10.1□□□□□ -0.79
CPNE4-211ENST00000514439 PRAMEF22A3QJZ6 481 aa10.1□□□□□ -0.79
CPNE4-211ENST00000514439 NBPF7P0C2Y1 421 aaPredicted RBP10.1□□□□□ -0.79
CPNE4-211ENST00000514439 PROSER3Q2NL68 480 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms