RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 HSCBQ8IWL3 235 aa8.8□□□□□ -1
NIPBL-208ENST00000514335 BIN2Q9UBW5 565 aaPredicted RBP8.8□□□□□ -1
NIPBL-208ENST00000514335 ALKQ9UM73 1620 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 INHBEP58166 350 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 CBX1P83916 185 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 SF3B2Q13435 895 aaKnown RBP8.79□□□□□ -1
NIPBL-208ENST00000514335 CCDC70Q6NSX1 233 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 TAF4BQ92750 862 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 MAP3K20Q9NYL2 800 aaKnown RBP8.79□□□□□ -1
NIPBL-208ENST00000514335 ISY1Q9ULR0 285 aaKnown RBP8.79□□□□□ -1
NIPBL-208ENST00000514335 SHPRHQ149N8 1683 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 NOP2P46087 812 aaKnown RBP8.79□□□□□ -1
NIPBL-208ENST00000514335 TIGD1Q96MW7 591 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 MED4Q9NPJ6 270 aa8.79□□□□□ -1
NIPBL-208ENST00000514335 IPO5O00410 1097 aaKnown RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 TNNT3P45378 269 aaPredicted RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 CDC37L1Q7L3B6 337 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 OGFOD1Q8N543 542 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 SUN2Q9UH99 717 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 ZNF777Q9ULD5 760 aaPredicted RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 DDX49Q9Y6V7 483 aaKnown RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 PRAG1Q86YV5 1406 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 NKTRP30414 1462 aaKnown RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 CARNS1A5YM72 827 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 TGFB3P10600 412 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 ABL2P42684 1182 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 HSP90AB2PQ58FF8 381 aa8.78□□□□□ -1
NIPBL-208ENST00000514335 SETD1AO15047 1707 aaKnown RBP8.78□□□□□ -1
NIPBL-208ENST00000514335 ERBB4Q15303 1308 aa8.77□□□□□ -1
NIPBL-208ENST00000514335 SYNRGQ9UMZ2 1314 aa8.77□□□□□ -1
NIPBL-208ENST00000514335 AMOTL1Q8IY63 956 aa8.77□□□□□ -1
NIPBL-208ENST00000514335 C1orf131Q8NDD1 294 aaKnown RBP8.77□□□□□ -1
NIPBL-208ENST00000514335 ZC3H15Q8WU90 426 aaKnown RBP8.77□□□□□ -1
NIPBL-208ENST00000514335 FBXO9Q9UK97 447 aaPredicted RBP8.77□□□□□ -1
NIPBL-208ENST00000514335 CLTCQ00610 1675 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 OATP04181 439 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 PPP2R5AQ15172 486 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 IRAK4Q9NWZ3 460 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 EHBP1L1Q8N3D4 1523 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 EVA1CP58658 441 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 DZIP3Q86Y13 1208 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 KLHL23Q8NBE8 558 aa8.77□□□□□ -1.01
NIPBL-208ENST00000514335 UHMK1Q8TAS1 419 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 ENOX1Q8TC92 643 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 DUSP9Q99956 384 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 TSPYL2Q9H2G4 693 aaPredicted RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 MKRN1Q9UHC7 482 aaKnown RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 ARIH1Q9Y4X5 557 aaPredicted RBP8.77□□□□□ -1.01
NIPBL-208ENST00000514335 CWC25Q9NXE8 425 aaPredicted RBP8.76□□□□□ -1.01
NIPBL-208ENST00000514335 RABL2BQ9UNT1 228 aa8.76□□□□□ -1.01
NIPBL-208ENST00000514335 SCAPERQ9BY12 1400 aa8.76□□□□□ -1.01
NIPBL-208ENST00000514335 ZNF771Q7L3S4 317 aaPredicted RBP8.76□□□□□ -1.01
NIPBL-208ENST00000514335 HS6ST3Q8IZP7 471 aa8.76□□□□□ -1.01
NIPBL-208ENST00000514335 PRPF38AQ8NAV1 312 aaKnown RBP8.76□□□□□ -1.01
NIPBL-208ENST00000514335 TMX1Q9H3N1 280 aa8.76□□□□□ -1.01
NIPBL-208ENST00000514335 COMMD10Q9Y6G5 202 aa8.76□□□□□ -1.01
NIPBL-208ENST00000514335 SHANK2Q9UPX8 1470 aa8.75□□□□□ -1.01
NIPBL-208ENST00000514335 COPB2P35606 906 aa8.75□□□□□ -1.01
NIPBL-208ENST00000514335 ICE2Q659A1 982 aa8.75□□□□□ -1.01
NIPBL-208ENST00000514335 SEZ6LQ9BYH1 1024 aa8.75□□□□□ -1.01
NIPBL-208ENST00000514335 SWT1Q5T5J6 900 aaKnown RBP8.75□□□□□ -1.01
NIPBL-208ENST00000514335 L1TD1Q5T7N2 865 aaKnown RBP8.75□□□□□ -1.01
NIPBL-208ENST00000514335 GOPCQ9HD26 462 aa8.75□□□□□ -1.01
NIPBL-208ENST00000514335 FAM184AQ8NB25 1140 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 PNISRQ8TF01 805 aaKnown RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 H0YHG0 523 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 SARNPP82979 210 aaKnown RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 EFCAB2Q5VUJ9 269 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 ARL10Q8N8L6 244 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 ERCC4Q92889 916 aaPredicted RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 TOMM22Q9NS69 142 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 AMOTL2Q9Y2J4 779 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 FAN1Q9Y2M0 1017 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 SPHKAPQ2M3C7 1700 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 RBM47A0AV96 593 aaKnown RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 KIF3CO14782 793 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 GUCY2CP25092 1073 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 MNS1Q8NEH6 495 aa8.74□□□□□ -1.01
NIPBL-208ENST00000514335 RBM46Q8TBY0 533 aaKnown RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 CIZ1Q9ULV3 898 aaPredicted RBP8.74□□□□□ -1.01
NIPBL-208ENST00000514335 AHDC1Q5TGY3 1603 aaPredicted RBP8.73□□□□□ -1.01
NIPBL-208ENST00000514335 PRDM15P57071 1507 aaPredicted RBP8.73□□□□□ -1.01
NIPBL-208ENST00000514335 TRAK2O60296 914 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 TRIM74Q86UV6 250 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 TRIM73Q86UV7 250 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 DRC1Q96MC2 740 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.73□□□□□ -1.012e-6■■■□□ 17.1
NIPBL-208ENST00000514335 KIF3AQ9Y496 699 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 MAP9Q49MG5 647 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 AMOTQ4VCS5 1084 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 CHCHD3Q9NX63 227 aaKnown RBP8.73□□□□□ -1.01
NIPBL-208ENST00000514335 RSPH14Q9UHP6 348 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 PAXBP1Q9Y5B6 917 aa8.73□□□□□ -1.01
NIPBL-208ENST00000514335 UBR1Q8IWV7 1749 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 MROH1Q8NDA8 1641 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 ARHGAP5Q13017 1502 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 CASQ1P31415 396 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 AGBL1Q96MI9 1066 aa8.72□□□□□ -1.01
NIPBL-208ENST00000514335 NEUROD6Q96NK8 337 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms