RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 INSRP06213 1382 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 OVOS2A0A0G2JMS6 1433 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 PHKG2P15735 406 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 CDCA7Q9BWT1 371 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 AIMP1Q12904 312 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 ADAMTS8Q9UP79 889 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 USP31Q70CQ4 1352 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 PRAMEF22A3QJZ6 481 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 MYL6BP14649 208 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 RIPK4P57078 832 aa10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 BLMP54132 1417 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-219ENST00000514096 APAF1O14727 1248 aa10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 ZNF827Q17R98 1081 aa10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 CAMKK2Q96RR4 588 aa10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 TBC1D2BQ9UPU7 963 aa10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 BRD4O60885 1362 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 DNAJC10Q8IXB1 793 aa10.27□□□□□ -0.77
LIMCH1-219ENST00000514096 LOC102724428A0A0B4J2F2 783 aa10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 SIK1P57059 783 aa10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 KRT24Q2M2I5 525 aa10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 ZNF526Q8TF50 670 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 PRKRIP1Q9H875 184 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 TRPM3Q9HCF6 1732 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-219ENST00000514096 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 CHMP4BQ9H444 224 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 NRKQ7Z2Y5 1582 aa10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 BTBD11A6QL63 1104 aa10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 SRP68Q9UHB9 627 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 ALS2Q96Q42 1657 aa10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 FKBP8Q14318 412 aa10.25□□□□□ -0.77
LIMCH1-219ENST00000514096 PLCH1Q4KWH8 1693 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 GNAT3A8MTJ3 354 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 SLC15A2Q16348 729 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 AMIGO3Q86WK7 504 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 PALLDQ8WX93 1383 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 A1BGP04217 495 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 MIER1Q8N108 512 aa10.24□□□□□ -0.77
LIMCH1-219ENST00000514096 GPR162Q16538 588 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 CCDC125Q86Z20 511 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 GTF2E1P29083 439 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 RFC4P35249 363 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 SPON1Q9HCB6 807 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 ITPK1Q13572 414 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 IL17REQ8NFR9 667 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 ATG3Q9NT62 314 aa10.23□□□□□ -0.77
LIMCH1-219ENST00000514096 COL14A1Q05707 1796 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 TSPYL4Q9UJ04 414 aa10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 BRWD3Q6RI45 1802 aa10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 MAP2P11137 1827 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 AMOTQ4VCS5 1084 aa10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 ZNF496Q96IT1 587 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 DCAF5Q96JK2 942 aa10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 PHRF1Q9P1Y6 1649 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 PCNTO95613 3336 aa10.22□□□□□ -0.77
LIMCH1-219ENST00000514096 RNMTO43148 476 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-219ENST00000514096 NFAT5O94916 1531 aa10.21□□□□□ -0.77
LIMCH1-219ENST00000514096 IGSF1Q8N6C5 1336 aa10.21□□□□□ -0.77
LIMCH1-219ENST00000514096 GPTP24298 496 aa10.21□□□□□ -0.78
LIMCH1-219ENST00000514096 TSR2Q969E8 191 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-219ENST00000514096 TOPAZ1Q8N9V7 1692 aa10.21□□□□□ -0.78
LIMCH1-219ENST00000514096 COL23A1Q86Y22 540 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 LINC00116Q8NCU8 138 aa10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 GAS2L2Q8NHY3 880 aa10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 RTCBQ9Y3I0 505 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 LTN1O94822 1766 aa10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 RGPD2P0DJD1 1756 aa10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 USP16Q9Y5T5 823 aa10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 MYBBP1AQ9BQG0 1328 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 JARID2Q92833 1246 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 FHDC1Q9C0D6 1143 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-219ENST00000514096 DCAF8L1A6NGE4 600 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 POLD1P28340 1107 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 RALBP1Q15311 655 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 AKAP4Q5JQC9 854 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 ZBTB3Q9H5J0 574 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 ZBTB1Q9Y2K1 713 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 HSP90AB1P08238 724 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 BBXQ8WY36 941 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 CCDC85AQ96PX6 553 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 BCL2L13Q9BXK5 485 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 ZPR1O75312 459 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 TRAPPC3LQ5T215 181 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 RSPH6AQ9H0K4 717 aa10.19□□□□□ -0.78
LIMCH1-219ENST00000514096 SLC4A9Q96Q91 983 aa10.18□□□□□ -0.78
LIMCH1-219ENST00000514096 CRKLP46109 303 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-219ENST00000514096 SLC52A2Q9HAB3 445 aa10.18□□□□□ -0.78
LIMCH1-219ENST00000514096 NAP1L2Q9ULW6 460 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 SLIT3O75094 1523 aa10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 TNS2Q63HR2 1409 aa10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 MMP10P09238 476 aa10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 USPL1Q5W0Q7 1092 aa10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 PLCD3Q8N3E9 789 aa10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 SMARCC1Q92922 1105 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 COL22A1Q8NFW1 1626 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-219ENST00000514096 AKAP12Q02952 1782 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 PLSCR1O15162 318 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 ZNF790Q6PG37 636 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 BCS1LQ9Y276 419 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 CEP350Q5VT06 3117 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms