RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 SOX12O15370 315 aa11.39□□□□□ -0.59
CLDND1-229ENST00000513988 MMP10P09238 476 aa11.39□□□□□ -0.59
CLDND1-229ENST00000513988 EVX2Q03828 476 aa11.39□□□□□ -0.59
CLDND1-229ENST00000513988 MCOLN1Q9GZU1 580 aa11.39□□□□□ -0.59
CLDND1-229ENST00000513988 SBF1O95248 1867 aa11.38□□□□□ -0.59
CLDND1-229ENST00000513988 BRCA1P38398 1863 aaKnown RBP11.38□□□□□ -0.59
CLDND1-229ENST00000513988 NSD3Q9BZ95 1437 aa11.38□□□□□ -0.59
CLDND1-229ENST00000513988 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.38□□□□□ -0.59
CLDND1-229ENST00000513988 KCNH5Q8NCM2 988 aa11.38□□□□□ -0.59
CLDND1-229ENST00000513988 SP7Q8TDD2 431 aaPredicted RBP11.38□□□□□ -0.59
CLDND1-229ENST00000513988 GCC1Q96CN9 775 aa11.38□□□□□ -0.59
CLDND1-229ENST00000513988 DCAF5Q96JK2 942 aa11.38□□□□□ -0.59
CLDND1-229ENST00000513988 AMIGO3Q86WK7 504 aa11.37□□□□□ -0.59
CLDND1-229ENST00000513988 BEGAINQ9BUH8 593 aa11.37□□□□□ -0.59
CLDND1-229ENST00000513988 DLL1O00548 723 aa11.36□□□□□ -0.59
CLDND1-229ENST00000513988 PRR29P0C7W0 189 aa11.36□□□□□ -0.59
CLDND1-229ENST00000513988 DALRD3Q5D0E6 543 aaKnown RBP11.36□□□□□ -0.59
CLDND1-229ENST00000513988 PIM2Q9P1W9 311 aa11.36□□□□□ -0.59
CLDND1-229ENST00000513988 TAF1LQ8IZX4 1826 aa11.36□□□□□ -0.59
CLDND1-229ENST00000513988 C4BP0C0L5 1744 aa11.35□□□□□ -0.59
CLDND1-229ENST00000513988 TOGARAM1Q9Y4F4 1720 aa11.35□□□□□ -0.59
CLDND1-229ENST00000513988 TMEM88BA6NKF7 163 aa11.35□□□□□ -0.59
CLDND1-229ENST00000513988 CCDC87Q9NVE4 849 aa11.35□□□□□ -0.59
CLDND1-229ENST00000513988 UBR3Q6ZT12 1888 aa11.35□□□□□ -0.59
CLDND1-229ENST00000513988 SPDYE4A6NLX3 237 aa11.34□□□□□ -0.59
CLDND1-229ENST00000513988 SSFA2P28290 1259 aa11.34□□□□□ -0.59
CLDND1-229ENST00000513988 CUL9Q8IWT3 2517 aa11.33□□□□□ -0.6
CLDND1-229ENST00000513988 POTECB2RU33 542 aa11.33□□□□□ -0.6
CLDND1-229ENST00000513988 KCNA3P22001 575 aa11.33□□□□□ -0.6
CLDND1-229ENST00000513988 SOX10P56693 466 aa11.33□□□□□ -0.6
CLDND1-229ENST00000513988 WDR33Q9C0J8 1336 aaKnown RBP11.33□□□□□ -0.6
CLDND1-229ENST00000513988 LMNB1P20700 586 aa11.32□□□□□ -0.6
CLDND1-229ENST00000513988 RASSF7Q02833 373 aa11.32□□□□□ -0.6
CLDND1-229ENST00000513988 DGKZQ13574 1117 aa11.32□□□□□ -0.6
CLDND1-229ENST00000513988 DEFB115Q30KQ5 88 aa11.32□□□□□ -0.6
CLDND1-229ENST00000513988 PASKQ96RG2 1323 aa11.32□□□□□ -0.6
CLDND1-229ENST00000513988 PALLDQ8WX93 1383 aa11.31□□□□□ -0.6
CLDND1-229ENST00000513988 RASSF10A6NK89 507 aa11.31□□□□□ -0.6
CLDND1-229ENST00000513988 HABP4Q5JVS0 413 aaKnown RBP11.31□□□□□ -0.6
CLDND1-229ENST00000513988 DPY19L2Q6NUT2 758 aa11.31□□□□□ -0.6
CLDND1-229ENST00000513988 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
CLDND1-229ENST00000513988 TIAM2Q8IVF5 1701 aa11.3□□□□□ -0.6
CLDND1-229ENST00000513988 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
CLDND1-229ENST00000513988 POTEJP0CG39 1038 aa11.3□□□□□ -0.6
CLDND1-229ENST00000513988 TSKSQ9UJT2 592 aa11.3□□□□□ -0.6
CLDND1-229ENST00000513988 NFAT5O94916 1531 aa11.3□□□□□ -0.6
CLDND1-229ENST00000513988 ANKRD24Q8TF21 1146 aa11.29□□□□□ -0.6
CLDND1-229ENST00000513988 SRPK2P78362 688 aaKnown RBP11.28□□□□□ -0.6
CLDND1-229ENST00000513988 NLGN1Q8N2Q7 840 aa11.28□□□□□ -0.6
CLDND1-229ENST00000513988 CASP8AP2Q9UKL3 1982 aa11.27□□□□□ -0.61
CLDND1-229ENST00000513988 TMF1P82094 1093 aa11.27□□□□□ -0.61
CLDND1-229ENST00000513988 NBPF15Q8N660 670 aa11.27□□□□□ -0.61
CLDND1-229ENST00000513988 PARP3Q9Y6F1 533 aa11.27□□□□□ -0.61
CLDND1-229ENST00000513988 C4AP0C0L4 1744 aa11.26□□□□□ -0.61
CLDND1-229ENST00000513988 GNPATO15228 680 aa11.26□□□□□ -0.61
CLDND1-229ENST00000513988 LDHDQ86WU2 507 aa11.26□□□□□ -0.61
CLDND1-229ENST00000513988 ZCRB1Q8TBF4 217 aaKnown RBP11.26□□□□□ -0.61
CLDND1-229ENST00000513988 ABT1Q9ULW3 272 aaKnown RBP11.26□□□□□ -0.61
CLDND1-229ENST00000513988 PAXIP1Q6ZW49 1069 aaPredicted RBP11.25□□□□□ -0.61
CLDND1-229ENST00000513988 A0A0C4DFX4 3053 aa11.25□□□□□ -0.61
CLDND1-229ENST00000513988 THSD7BQ9C0I4 1608 aa11.24□□□□□ -0.61
CLDND1-229ENST00000513988 SMARCC1Q92922 1105 aaPredicted RBP11.24□□□□□ -0.61
CLDND1-229ENST00000513988 CABP1Q9NZU7 370 aa11.24□□□□□ -0.61
CLDND1-229ENST00000513988 CCDC88AQ3V6T2 1871 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 CA12O43570 354 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 ITGBL1O95965 494 aaPredicted RBP11.23□□□□□ -0.61
CLDND1-229ENST00000513988 CHRNA5P30532 468 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 ECE1P42892 770 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 GRM1Q13255 1194 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 LINC00116Q8NCU8 138 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 CAPNS2Q96L46 248 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 GPR101Q96P66 508 aaPredicted RBP11.23□□□□□ -0.61
CLDND1-229ENST00000513988 CABP2Q9NPB3 220 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 TTC21BQ7Z4L5 1316 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 LTBP1Q14766 1721 aa11.23□□□□□ -0.61
CLDND1-229ENST00000513988 FXR1P51114 621 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLDND1-229ENST00000513988 MPRIPQ6WCQ1 1025 aa11.22□□□□□ -0.61
CLDND1-229ENST00000513988 C19orf67A6NJJ6 358 aa11.21□□□□□ -0.61
CLDND1-229ENST00000513988 SLC17A8Q8NDX2 589 aa11.21□□□□□ -0.61
CLDND1-229ENST00000513988 TTC21AQ8NDW8 1320 aa11.2□□□□□ -0.62
CLDND1-229ENST00000513988 IQCA1LA6NCM1 817 aa11.2□□□□□ -0.62
CLDND1-229ENST00000513988 TRAPPC3LQ5T215 181 aa11.2□□□□□ -0.62
CLDND1-229ENST00000513988 LTN1O94822 1766 aa11.2□□□□□ -0.62
CLDND1-229ENST00000513988 DDNO94850 711 aaPredicted RBP11.19□□□□□ -0.62
CLDND1-229ENST00000513988 ERFEQ4G0M1 354 aa11.19□□□□□ -0.62
CLDND1-229ENST00000513988 EAPPQ56P03 285 aaPredicted RBP11.19□□□□□ -0.62
CLDND1-229ENST00000513988 CYP4F22Q6NT55 531 aa11.19□□□□□ -0.62
CLDND1-229ENST00000513988 LTV1Q96GA3 475 aaPredicted RBP11.19□□□□□ -0.62
CLDND1-229ENST00000513988 FAM208AQ9UK61 1670 aaKnown RBP11.19□□□□□ -0.62
CLDND1-229ENST00000513988 LOC102724428A0A0B4J2F2 783 aa11.18□□□□□ -0.62
CLDND1-229ENST00000513988 LOC105371045A0A1W2PR82 267 aa11.18□□□□□ -0.62
CLDND1-229ENST00000513988 GYS1P13807 737 aa11.18□□□□□ -0.62
CLDND1-229ENST00000513988 SIK1P57059 783 aa11.18□□□□□ -0.62
CLDND1-229ENST00000513988 TAF1DQ9H5J8 278 aaPredicted RBP11.18□□□□□ -0.62
CLDND1-229ENST00000513988 KDM2AQ9Y2K7 1162 aa11.18□□□□□ -0.62
CLDND1-229ENST00000513988 RTCBQ9Y3I0 505 aaKnown RBP11.18□□□□□ -0.62
CLDND1-229ENST00000513988 PITPNM2Q9BZ72 1349 aa11.17□□□□□ -0.62
CLDND1-229ENST00000513988 NFKBIEO00221 500 aa11.17□□□□□ -0.62
CLDND1-229ENST00000513988 MAP2K2P36507 400 aa11.17□□□□□ -0.62
CLDND1-229ENST00000513988 NBPF1Q3BBV0 1214 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms