RNA–Protein interactions for RNA: ENST00000513266.5

PTPN20-228, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 818 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-228ENST00000513266 GLTPD2A6NH11 291 aa13.9□□□□□ -0.18
PTPN20-228ENST00000513266 CCDC85CA6NKD9 419 aa13.9□□□□□ -0.18
PTPN20-228ENST00000513266 POTECB2RU33 542 aa13.9□□□□□ -0.18
PTPN20-228ENST00000513266 WBP1LQ9NX94 342 aa13.9□□□□□ -0.18
PTPN20-228ENST00000513266 PIM2Q9P1W9 311 aa13.9□□□□□ -0.18
PTPN20-228ENST00000513266 SBNO2Q9Y2G9 1366 aa13.89□□□□□ -0.19
PTPN20-228ENST00000513266 GNPATO15228 680 aa13.89□□□□□ -0.19
PTPN20-228ENST00000513266 DALRD3Q5D0E6 543 aaKnown RBP13.89□□□□□ -0.19
PTPN20-228ENST00000513266 SMARCC1Q92922 1105 aaPredicted RBP13.89□□□□□ -0.19
PTPN20-228ENST00000513266 CCDC87Q9NVE4 849 aa13.89□□□□□ -0.19
PTPN20-228ENST00000513266 HSPA8P11142 646 aaKnown RBP13.88□□□□□ -0.19
PTPN20-228ENST00000513266 RASSF7Q02833 373 aa13.88□□□□□ -0.19
PTPN20-228ENST00000513266 DICER1Q9UPY3 1922 aaKnown RBP13.88□□□□□ -0.19
PTPN20-228ENST00000513266 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
PTPN20-228ENST00000513266 NLGN1Q8N2Q7 840 aa13.87□□□□□ -0.19
PTPN20-228ENST00000513266 LOC102724428A0A0B4J2F2 783 aa13.86□□□□□ -0.19
PTPN20-228ENST00000513266 VEGFBP49765 207 aa13.86□□□□□ -0.19
PTPN20-228ENST00000513266 SIK1P57059 783 aa13.86□□□□□ -0.19
PTPN20-228ENST00000513266 TMF1P82094 1093 aa13.86□□□□□ -0.19
PTPN20-228ENST00000513266 ITPK1Q13572 414 aa13.86□□□□□ -0.19
PTPN20-228ENST00000513266 MYH14Q7Z406 1995 aaKnown RBP13.85□□□□□ -0.19
PTPN20-228ENST00000513266 PIGBQ92521 554 aa13.84□□□□□ -0.19
PTPN20-228ENST00000513266 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
PTPN20-228ENST00000513266 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
PTPN20-228ENST00000513266 DLEC1Q9Y238 1755 aa13.83□□□□□ -0.19
PTPN20-228ENST00000513266 GYS1P13807 737 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 LMNB1P20700 586 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 CHRNA5P30532 468 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 HOXC9P31274 260 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 CHADLQ6NUI6 762 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 PARP3Q9Y6F1 533 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 PCDH11XQ9BZA7 1347 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 PCDH11YQ9BZA8 1340 aa13.83□□□□□ -0.2
PTPN20-228ENST00000513266 CYP27B1O15528 508 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 POTEIP0CG38 1075 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 POTEJP0CG39 1038 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 NBPF6Q5VWK0 638 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 NBPF4Q96M43 638 aa13.82□□□□□ -0.2
PTPN20-228ENST00000513266 TRAPPC3LQ5T215 181 aa13.81□□□□□ -0.2
PTPN20-228ENST00000513266 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
PTPN20-228ENST00000513266 PASKQ96RG2 1323 aa13.81□□□□□ -0.2
PTPN20-228ENST00000513266 CASP8AP2Q9UKL3 1982 aa13.8□□□□□ -0.2
PTPN20-228ENST00000513266 ZNF831Q5JPB2 1677 aa13.8□□□□□ -0.2
PTPN20-228ENST00000513266 ATP6V1AP38606 617 aa13.8□□□□□ -0.2
PTPN20-228ENST00000513266 RAPGEF4Q8WZA2 1011 aa13.8□□□□□ -0.2
PTPN20-228ENST00000513266 ARHGEF1Q92888 912 aaKnown RBP13.8□□□□□ -0.2
PTPN20-228ENST00000513266 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
PTPN20-228ENST00000513266 FBLN1P23142 703 aa13.79□□□□□ -0.2
PTPN20-228ENST00000513266 RTCBQ9Y3I0 505 aaKnown RBP13.79□□□□□ -0.2
PTPN20-228ENST00000513266 EDC4Q6P2E9 1401 aaKnown RBP13.79□□□□□ -0.2
PTPN20-228ENST00000513266 THSD7BQ9C0I4 1608 aa13.79□□□□□ -0.2
PTPN20-228ENST00000513266 TATP17735 454 aaPredicted RBP13.78□□□□□ -0.2
PTPN20-228ENST00000513266 ASAP1Q9ULH1 1129 aa13.78□□□□□ -0.2
PTPN20-228ENST00000513266 FER1L6Q2WGJ9 1857 aa13.78□□□□□ -0.2
PTPN20-228ENST00000513266 DDR1Q08345 913 aa13.77□□□□□ -0.21
PTPN20-228ENST00000513266 RAB3GAP2Q9H2M9 1393 aa13.77□□□□□ -0.21
PTPN20-228ENST00000513266 SCN4AP35499 1836 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 KDRP35968 1356 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 TMEM88BA6NKF7 163 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 ADRA2BP18089 450 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 AMPHP49418 695 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
PTPN20-228ENST00000513266 NFKBIEO00221 500 aa13.75□□□□□ -0.21
PTPN20-228ENST00000513266 RFC4P35249 363 aa13.75□□□□□ -0.21
PTPN20-228ENST00000513266 MAP2K1Q02750 393 aaPredicted RBP13.75□□□□□ -0.21
PTPN20-228ENST00000513266 DPY19L2Q6NUT2 758 aa13.75□□□□□ -0.21
PTPN20-228ENST00000513266 RASSF10A6NK89 507 aa13.74□□□□□ -0.21
PTPN20-228ENST00000513266 NKX1-1Q15270 411 aaPredicted RBP13.74□□□□□ -0.21
PTPN20-228ENST00000513266 SLC4A9Q96Q91 983 aa13.74□□□□□ -0.21
PTPN20-228ENST00000513266 LTBP1Q14766 1721 aa13.73□□□□□ -0.21
PTPN20-228ENST00000513266 ADAMTS7Q9UKP4 1686 aa13.73□□□□□ -0.21
PTPN20-228ENST00000513266 WDR33Q9C0J8 1336 aaKnown RBP13.73□□□□□ -0.21
PTPN20-228ENST00000513266 ITGBL1O95965 494 aaPredicted RBP13.73□□□□□ -0.21
PTPN20-228ENST00000513266 ATG3Q9NT62 314 aa13.73□□□□□ -0.21
PTPN20-228ENST00000513266 ADAMTSL1Q8N6G6 1762 aa13.73□□□□□ -0.21
PTPN20-228ENST00000513266 NRXN2Q9P2S2 1712 aa13.73□□□□□ -0.21
PTPN20-228ENST00000513266 A0A1W2PP64 1363 aa13.72□□□□□ -0.21
PTPN20-228ENST00000513266 RTL1A6NKG5 1358 aa13.72□□□□□ -0.21
PTPN20-228ENST00000513266 RPS6KA4O75676 772 aa13.72□□□□□ -0.21
PTPN20-228ENST00000513266 FKBP8Q14318 412 aa13.72□□□□□ -0.21
PTPN20-228ENST00000513266 RC3H1Q5TC82 1133 aaKnown RBP13.72□□□□□ -0.21
PTPN20-228ENST00000513266 TMOD3Q9NYL9 352 aa13.72□□□□□ -0.21
PTPN20-228ENST00000513266 CNTNAP4Q9C0A0 1308 aa13.71□□□□□ -0.21
PTPN20-228ENST00000513266 DEFB115Q30KQ5 88 aa13.71□□□□□ -0.21
PTPN20-228ENST00000513266 HDGFL2Q7Z4V5 671 aaPredicted RBP13.71□□□□□ -0.21
PTPN20-228ENST00000513266 LDHDQ86WU2 507 aa13.71□□□□□ -0.21
PTPN20-228ENST00000513266 MCOLN1Q9GZU1 580 aa13.71□□□□□ -0.21
PTPN20-228ENST00000513266 SLC12A5Q9H2X9 1139 aa13.71□□□□□ -0.21
PTPN20-228ENST00000513266 SRP68Q9UHB9 627 aaKnown RBP13.71□□□□□ -0.21
PTPN20-228ENST00000513266 POLRMTO00411 1230 aaKnown RBP13.7□□□□□ -0.22
PTPN20-228ENST00000513266 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
PTPN20-228ENST00000513266 DDNO94850 711 aaPredicted RBP13.69□□□□□ -0.22
PTPN20-228ENST00000513266 PRPF38BQ5VTL8 546 aaKnown RBP13.69□□□□□ -0.22
PTPN20-228ENST00000513266 TMC1Q8TDI8 760 aa13.69□□□□□ -0.22
PTPN20-228ENST00000513266 TSKSQ9UJT2 592 aa13.69□□□□□ -0.22
PTPN20-228ENST00000513266 USP42Q9H9J4 1324 aaKnown RBP13.68□□□□□ -0.22
PTPN20-228ENST00000513266 CACNA1SQ13698 1873 aa13.68□□□□□ -0.22
PTPN20-228ENST00000513266 RRS1Q15050 365 aaKnown RBP13.68□□□□□ -0.22
PTPN20-228ENST00000513266 ERFEQ4G0M1 354 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms