RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
CLCN3-208ENST00000512813 USP31Q70CQ4 1352 aa13.79□□□□□ -0.2
CLCN3-208ENST00000512813 NLGN1Q8N2Q7 840 aa13.78□□□□□ -0.2
CLCN3-208ENST00000512813 DCAF11Q8TEB1 546 aa13.78□□□□□ -0.2
CLCN3-208ENST00000512813 SMARCC1Q92922 1105 aaPredicted RBP13.78□□□□□ -0.2
CLCN3-208ENST00000512813 TMEM88BA6NKF7 163 aa13.77□□□□□ -0.21
CLCN3-208ENST00000512813 GNPATO15228 680 aa13.77□□□□□ -0.21
CLCN3-208ENST00000512813 LINC00116Q8NCU8 138 aa13.77□□□□□ -0.21
CLCN3-208ENST00000512813 RASSF10A6NK89 507 aa13.76□□□□□ -0.21
CLCN3-208ENST00000512813 MCOLN1Q9GZU1 580 aa13.76□□□□□ -0.21
CLCN3-208ENST00000512813 CENPJQ9HC77 1338 aaPredicted RBP13.75□□□□□ -0.21
CLCN3-208ENST00000512813 POTEIP0CG38 1075 aa13.75□□□□□ -0.21
CLCN3-208ENST00000512813 POTEJP0CG39 1038 aa13.75□□□□□ -0.21
CLCN3-208ENST00000512813 TMF1P82094 1093 aa13.75□□□□□ -0.21
CLCN3-208ENST00000512813 PIAS4Q8N2W9 510 aaPredicted RBP13.75□□□□□ -0.21
CLCN3-208ENST00000512813 MON2Q7Z3U7 1717 aa13.75□□□□□ -0.21
CLCN3-208ENST00000512813 ITGB4P16144 1822 aa13.74□□□□□ -0.21
CLCN3-208ENST00000512813 MPRIPQ6WCQ1 1025 aa13.74□□□□□ -0.21
CLCN3-208ENST00000512813 PARP3Q9Y6F1 533 aa13.74□□□□□ -0.21
CLCN3-208ENST00000512813 LTBP1Q14766 1721 aa13.73□□□□□ -0.21
CLCN3-208ENST00000512813 WDR33Q9C0J8 1336 aaKnown RBP13.73□□□□□ -0.21
CLCN3-208ENST00000512813 DPY19L2Q6NUT2 758 aa13.73□□□□□ -0.21
CLCN3-208ENST00000512813 CCDC88AQ3V6T2 1871 aa13.72□□□□□ -0.21
CLCN3-208ENST00000512813 CGNL1Q0VF96 1302 aa13.72□□□□□ -0.21
CLCN3-208ENST00000512813 KTN1Q86UP2 1357 aaKnown RBP13.71□□□□□ -0.21
CLCN3-208ENST00000512813 RGPD2P0DJD1 1756 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 LOC102724428A0A0B4J2F2 783 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 GYS1P13807 737 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 CHRNA5P30532 468 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 SIK1P57059 783 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 DEFB115Q30KQ5 88 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 IP6K1Q92551 441 aa13.71□□□□□ -0.21
CLCN3-208ENST00000512813 ITPK1Q13572 414 aa13.7□□□□□ -0.22
CLCN3-208ENST00000512813 LDHDQ86WU2 507 aa13.7□□□□□ -0.22
CLCN3-208ENST00000512813 LTV1Q96GA3 475 aaPredicted RBP13.7□□□□□ -0.22
CLCN3-208ENST00000512813 BEGAINQ9BUH8 593 aa13.7□□□□□ -0.22
CLCN3-208ENST00000512813 PCDH11XQ9BZA7 1347 aa13.69□□□□□ -0.22
CLCN3-208ENST00000512813 PCDH11YQ9BZA8 1340 aa13.69□□□□□ -0.22
CLCN3-208ENST00000512813 ITGBL1O95965 494 aaPredicted RBP13.69□□□□□ -0.22
CLCN3-208ENST00000512813 GCC1Q96CN9 775 aa13.69□□□□□ -0.22
CLCN3-208ENST00000512813 CD163L1Q9NR16 1453 aa13.68□□□□□ -0.22
CLCN3-208ENST00000512813 ADRA2BP18089 450 aa13.68□□□□□ -0.22
CLCN3-208ENST00000512813 TRAPPC3LQ5T215 181 aa13.68□□□□□ -0.22
CLCN3-208ENST00000512813 DICER1Q9UPY3 1922 aaKnown RBP13.68□□□□□ -0.22
CLCN3-208ENST00000512813 DLEC1Q9Y238 1755 aa13.68□□□□□ -0.22
CLCN3-208ENST00000512813 NFKBIEO00221 500 aa13.67□□□□□ -0.22
CLCN3-208ENST00000512813 NME9Q86XW9 330 aa13.67□□□□□ -0.22
CLCN3-208ENST00000512813 RTCBQ9Y3I0 505 aaKnown RBP13.67□□□□□ -0.22
CLCN3-208ENST00000512813 CUL9Q8IWT3 2517 aa13.67□□□□□ -0.22
CLCN3-208ENST00000512813 EVC2Q86UK5 1308 aa13.66□□□□□ -0.22
CLCN3-208ENST00000512813 DGKZQ13574 1117 aa13.66□□□□□ -0.22
CLCN3-208ENST00000512813 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.66□□□□□ -0.22
CLCN3-208ENST00000512813 PIGBQ92521 554 aa13.66□□□□□ -0.22
CLCN3-208ENST00000512813 ADAMTSL1Q8N6G6 1762 aa13.66□□□□□ -0.22
CLCN3-208ENST00000512813 SCN4AP35499 1836 aa13.65□□□□□ -0.22
CLCN3-208ENST00000512813 SOX10P56693 466 aa13.65□□□□□ -0.22
CLCN3-208ENST00000512813 ARHGEF1Q92888 912 aaKnown RBP13.65□□□□□ -0.22
CLCN3-208ENST00000512813 SBNO2Q9Y2G9 1366 aa13.65□□□□□ -0.22
CLCN3-208ENST00000512813 SMG6Q86US8 1419 aaKnown RBP13.64□□□□□ -0.23
CLCN3-208ENST00000512813 ZNF831Q5JPB2 1677 aa13.64□□□□□ -0.23
CLCN3-208ENST00000512813 ATP6V1AP38606 617 aa13.64□□□□□ -0.23
CLCN3-208ENST00000512813 DDR1Q08345 913 aa13.64□□□□□ -0.23
CLCN3-208ENST00000512813 TSKSQ9UJT2 592 aa13.64□□□□□ -0.23
CLCN3-208ENST00000512813 CASP8AP2Q9UKL3 1982 aa13.63□□□□□ -0.23
CLCN3-208ENST00000512813 KDRP35968 1356 aa13.63□□□□□ -0.23
CLCN3-208ENST00000512813 IQCA1LA6NCM1 817 aa13.63□□□□□ -0.23
CLCN3-208ENST00000512813 PPARGC1BQ86YN6 1023 aaKnown RBP13.63□□□□□ -0.23
CLCN3-208ENST00000512813 RAPGEF4Q8WZA2 1011 aa13.63□□□□□ -0.23
CLCN3-208ENST00000512813 COL5A3P25940 1745 aaPredicted RBP13.62□□□□□ -0.23
CLCN3-208ENST00000512813 CA12O43570 354 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 RFC4P35249 363 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 NBPF1Q3BBV0 1214 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 ERFEQ4G0M1 354 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 CAPNS2Q96L46 248 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 TAF1DQ9H5J8 278 aaPredicted RBP13.62□□□□□ -0.23
CLCN3-208ENST00000512813 ABT1Q9ULW3 272 aaKnown RBP13.62□□□□□ -0.23
CLCN3-208ENST00000512813 MAP3K19Q56UN5 1328 aa13.62□□□□□ -0.23
CLCN3-208ENST00000512813 CYP27B1O15528 508 aa13.61□□□□□ -0.23
CLCN3-208ENST00000512813 DDNO94850 711 aaPredicted RBP13.61□□□□□ -0.23
CLCN3-208ENST00000512813 HOXC9P31274 260 aa13.61□□□□□ -0.23
CLCN3-208ENST00000512813 ECE1P42892 770 aa13.61□□□□□ -0.23
CLCN3-208ENST00000512813 HABP4Q5JVS0 413 aaKnown RBP13.61□□□□□ -0.23
CLCN3-208ENST00000512813 GPR101Q96P66 508 aaPredicted RBP13.61□□□□□ -0.23
CLCN3-208ENST00000512813 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
CLCN3-208ENST00000512813 TATP17735 454 aaPredicted RBP13.6□□□□□ -0.23
CLCN3-208ENST00000512813 RC3H1Q5TC82 1133 aaKnown RBP13.6□□□□□ -0.23
CLCN3-208ENST00000512813 L3MBTL3Q96JM7 780 aaPredicted RBP13.6□□□□□ -0.23
CLCN3-208ENST00000512813 NBPF6Q5VWK0 638 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 TTLL6Q8N841 843 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 NBPF4Q96M43 638 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 ASAP1Q9ULH1 1129 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 CNTNAP4Q9C0A0 1308 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 FER1L6Q2WGJ9 1857 aa13.59□□□□□ -0.23
CLCN3-208ENST00000512813 RPS6KA4O75676 772 aa13.58□□□□□ -0.24
CLCN3-208ENST00000512813 FKBP8Q14318 412 aa13.58□□□□□ -0.24
CLCN3-208ENST00000512813 USHBP1Q8N6Y0 703 aa13.58□□□□□ -0.24
CLCN3-208ENST00000512813 RTL1A6NKG5 1358 aa13.58□□□□□ -0.24
CLCN3-208ENST00000512813 EDC4Q6P2E9 1401 aaKnown RBP13.57□□□□□ -0.24
CLCN3-208ENST00000512813 NRXN2Q9P2S2 1712 aa13.57□□□□□ -0.24
CLCN3-208ENST00000512813 POLRMTO00411 1230 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms