RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CCDC174Q6PII3 467 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 CCDC148Q8NFR7 591 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 RUFY2Q8WXA3 655 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 TUBB2BQ9BVA1 445 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 TAOK2Q9UL54 1235 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 RPRD2Q5VT52 1461 aaKnown RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 PDCP20941 246 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 SEPT7Q16181 437 aaKnown RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 CCDC73Q6ZRK6 1079 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 B4GALNT4Q76KP1 1039 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 CROCCP2Q86T23 111 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 FBXW7Q969H0 707 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 SMC6Q96SB8 1091 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 OGFRQ9NZT2 677 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 LARSQ9P2J5 1176 aaKnown RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 MKRN1Q9UHC7 482 aaKnown RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 CCDC196A0A1B0GTZ2 297 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 SLC34A2O95436 690 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 ZNF365Q70YC5 407 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 KLHL34Q8N239 644 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 ARFGAP2Q8N6H7 521 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 GRPEL1Q9HAV7 217 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 IGF1RP08069 1367 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 TNRQ92752 1358 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 RNF8O76064 485 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 CEBPAP49715 358 aaPredicted RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 SYCP1Q15431 976 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 ZKSCAN8Q15776 578 aaPredicted RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 PODNQ7Z5L7 613 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 CCDC110Q8TBZ0 833 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 NUP133Q8WUM0 1156 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 TTC14Q96N46 770 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 PLEKHH2Q8IVE3 1493 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 DEPDC5O75140 1603 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 MAP2K1Q02750 393 aaPredicted RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 MCM6Q14566 821 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 HSP90AB2PQ58FF8 381 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 KIF18AQ8NI77 898 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 TRPC5Q9UL62 973 aaPredicted RBP4.2□□□□□ -1.74
USP53-205ENST00000509769 C3P01024 1663 aa4.2□□□□□ -1.74
USP53-205ENST00000509769 NCOA3Q9Y6Q9 1424 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 BAG4O95429 457 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 ARHGAP25P42331 645 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 GSDMDP57764 484 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 PAXIP1Q6ZW49 1069 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 RPUSD2Q8IZ73 545 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 NUCKS1Q9H1E3 243 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 POLR1AO95602 1720 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 CCDC171Q6TFL3 1326 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 TRAK2O60296 914 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 CCDC192P0DO97 292 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 IRX4P78413 519 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 NBPF8Q3BBV2 869 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 NBPF14Q5TI25 921 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 TEX2Q8IWB9 1127 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 RPAP2Q8IXW5 612 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 DZIP1LQ8IYY4 767 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 CTCFLQ8NI51 663 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 SEPT8Q92599 483 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 ZMYM3Q14202 1370 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 MLH3Q9UHC1 1453 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 OPA1O60313 960 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 GIGYF1O75420 1035 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 MAP2K2P36507 400 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 SESN3P58005 492 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 GRIPAP1Q4V328 841 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 APLFQ8IW19 511 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 ZNF280CQ8ND82 737 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 NAA15Q9BXJ9 866 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 VCX3BQ9H321 246 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 VCX3AQ9NNX9 186 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 RGS17Q9UGC6 210 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 TPX2Q9ULW0 747 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 MYO3AQ8NEV4 1616 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 SPAG9O60271 1321 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 ZBED9Q6R2W3 1325 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 PLEKHH1Q9ULM0 1364 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 PLCH2O75038 1416 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 MED14O60244 1454 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 SMTNL1A8MU46 457 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 KIF5CO60282 957 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 SAFB2Q14151 953 aaKnown RBP eCLIP4.19□□□□□ -1.74
USP53-205ENST00000509769 IMMTQ16891 758 aaKnown RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 WHAMMP3Q1A5X7 153 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 CACNA2D3Q8IZS8 1091 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 ANKS4BQ8N8V4 417 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 WHAMMQ8TF30 809 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 CAPZA3Q96KX2 299 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 IFT74Q96LB3 600 aa4.19□□□□□ -1.74
USP53-205ENST00000509769 FEZ2Q9UHY8 353 aaPredicted RBP4.19□□□□□ -1.74
USP53-205ENST00000509769 ZNF853P0CG23 659 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 SLC8A1P32418 973 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 HSP90AA5PQ58FG0 334 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 CCDC158Q5M9N0 1113 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 ISM2Q6H9L7 571 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 FBF1Q8TES7 1133 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 CFAP45Q9UL16 551 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 H3BQV1 296 aa4.18□□□□□ -1.74
USP53-205ENST00000509769 HOXA7P31268 230 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms