RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 COG3Q96JB2 828 aa21.49■■□□□ 1.03
NUP54-205ENST00000507257 SRCIN1Q9C0H9 1055 aa21.49■■□□□ 1.03
NUP54-205ENST00000507257 STAP2Q9UGK3 403 aa21.49■■□□□ 1.03
NUP54-205ENST00000507257 N4BP2Q86UW6 1770 aaPredicted RBP21.48■■□□□ 1.03
NUP54-205ENST00000507257 RPAP1Q9BWH6 1393 aaPredicted RBP21.48■■□□□ 1.03
NUP54-205ENST00000507257 CHMLP26374 656 aa21.47■■□□□ 1.03
NUP54-205ENST00000507257 DCTN1Q14203 1278 aa21.47■■□□□ 1.03
NUP54-205ENST00000507257 NME9Q86XW9 330 aa21.47■■□□□ 1.03
NUP54-205ENST00000507257 RGPD1P0DJD0 1748 aa21.47■■□□□ 1.03
NUP54-205ENST00000507257 NOLC1Q14978 699 aaKnown RBP eCLIP21.47■■□□□ 1.03
NUP54-205ENST00000507257 CRB1P82279 1406 aa21.46■■□□□ 1.03
NUP54-205ENST00000507257 CPS1P31327 1500 aa21.46■■□□□ 1.03
NUP54-205ENST00000507257 ITSN1Q15811 1721 aa21.46■■□□□ 1.03
NUP54-205ENST00000507257 FKBP5Q13451 457 aaPredicted RBP21.46■■□□□ 1.03
NUP54-205ENST00000507257 USP48Q86UV5 1035 aa21.46■■□□□ 1.03
NUP54-205ENST00000507257 PALD1Q9ULE6 856 aa21.45■■□□□ 1.02
NUP54-205ENST00000507257 TCHHQ07283 1943 aa21.45■■□□□ 1.02
NUP54-205ENST00000507257 GNAI2P04899 355 aa21.45■■□□□ 1.02
NUP54-205ENST00000507257 MX1P20591 662 aa21.45■■□□□ 1.02
NUP54-205ENST00000507257 LRRCC1Q9C099 1032 aa21.45■■□□□ 1.02
NUP54-205ENST00000507257 WASLO00401 505 aaPredicted RBP21.44■■□□□ 1.02
NUP54-205ENST00000507257 KRT24Q2M2I5 525 aa21.44■■□□□ 1.02
NUP54-205ENST00000507257 FOXD4L5Q5VV16 416 aaPredicted RBP21.44■■□□□ 1.02
NUP54-205ENST00000507257 FOXD4L4Q8WXT5 416 aaPredicted RBP21.44■■□□□ 1.02
NUP54-205ENST00000507257 SPATA31D1Q6ZQQ2 1576 aa21.44■■□□□ 1.02
NUP54-205ENST00000507257 APBB1O00213 710 aa21.43■■□□□ 1.02
NUP54-205ENST00000507257 GADD45BO75293 160 aaPredicted RBP21.43■■□□□ 1.02
NUP54-205ENST00000507257 NPM1P06748 294 aaKnown RBP eCLIP21.43■■□□□ 1.02
NUP54-205ENST00000507257 TPM3P06753 285 aa21.43■■□□□ 1.02
NUP54-205ENST00000507257 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.43■■□□□ 1.02
NUP54-205ENST00000507257 DMTNQ08495 405 aa21.43■■□□□ 1.02
NUP54-205ENST00000507257 CACNA1FO60840 1977 aa21.42■■□□□ 1.02
NUP54-205ENST00000507257 SLC4A2P04920 1241 aa21.42■■□□□ 1.02
NUP54-205ENST00000507257 UBE2HP62256 183 aa21.42■■□□□ 1.02
NUP54-205ENST00000507257 DNTTIP2Q5QJE6 756 aaKnown RBP21.42■■□□□ 1.02
NUP54-205ENST00000507257 ADCY5O95622 1261 aa21.41■■□□□ 1.02
NUP54-205ENST00000507257 HSPA4P34932 840 aa21.41■■□□□ 1.02
NUP54-205ENST00000507257 ANO2Q9NQ90 1003 aa21.41■■□□□ 1.02
NUP54-205ENST00000507257 XRN1Q8IZH2 1706 aaKnown RBP21.4■■□□□ 1.02
NUP54-205ENST00000507257 GNAI3P08754 354 aa21.4■■□□□ 1.02
NUP54-205ENST00000507257 ZNF710Q8N1W2 664 aa21.4■■□□□ 1.02
NUP54-205ENST00000507257 SIRT1Q96EB6 747 aa21.4■■□□□ 1.02
NUP54-205ENST00000507257 USP25Q9UHP3 1055 aa21.4■■□□□ 1.02
NUP54-205ENST00000507257 KIF3AQ9Y496 699 aa21.4■■□□□ 1.02
NUP54-205ENST00000507257 KDM4AO75164 1064 aa21.39■■□□□ 1.02
NUP54-205ENST00000507257 EIF4A2Q14240 407 aaKnown RBP21.39■■□□□ 1.02
NUP54-205ENST00000507257 RRS1Q15050 365 aaKnown RBP21.39■■□□□ 1.02
NUP54-205ENST00000507257 WAPLQ7Z5K2 1190 aa21.39■■□□□ 1.02
NUP54-205ENST00000507257 NALCNQ8IZF0 1738 aa21.39■■□□□ 1.02
NUP54-205ENST00000507257 ATP8B2P98198 1209 aa21.39■■□□□ 1.01
NUP54-205ENST00000507257 FUCA2Q9BTY2 467 aa21.39■■□□□ 1.01
NUP54-205ENST00000507257 ATP6V1DQ9Y5K8 247 aa21.39■■□□□ 1.01
NUP54-205ENST00000507257 PXDNLA1KZ92 1463 aa21.38■■□□□ 1.01
NUP54-205ENST00000507257 ZSCAN22P10073 491 aaPredicted RBP21.38■■□□□ 1.01
NUP54-205ENST00000507257 SULT6B1Q6IMI4 303 aa21.38■■□□□ 1.01
NUP54-205ENST00000507257 ZRANB1Q9UGI0 708 aa21.38■■□□□ 1.01
NUP54-205ENST00000507257 CCDC61Q9Y6R9 512 aa21.38■■□□□ 1.01
NUP54-205ENST00000507257 A2ML1A8K2U0 1454 aa21.38■■□□□ 1.01
NUP54-205ENST00000507257 ZSCAN20P17040 1043 aaPredicted RBP21.37■■□□□ 1.01
NUP54-205ENST00000507257 GTPBP4Q9BZE4 634 aaKnown RBP21.37■■□□□ 1.01
NUP54-205ENST00000507257 TECPR2O15040 1411 aa21.37■■□□□ 1.01
NUP54-205ENST00000507257 RAPGEF3O95398 923 aa21.37■■□□□ 1.01
NUP54-205ENST00000507257 DIAPH3Q9NSV4 1193 aa21.37■■□□□ 1.01
NUP54-205ENST00000507257 EXOC6BQ9Y2D4 811 aa21.37■■□□□ 1.01
NUP54-205ENST00000507257 FAM208AQ9UK61 1670 aaKnown RBP21.37■■□□□ 1.01
NUP54-205ENST00000507257 SOS1Q07889 1333 aaPredicted RBP21.36■■□□□ 1.01
NUP54-205ENST00000507257 AEBP1Q8IUX7 1158 aa21.36■■□□□ 1.01
NUP54-205ENST00000507257 NUDT16Q96DE0 195 aaKnown RBP21.36■■□□□ 1.01
NUP54-205ENST00000507257 NRXN3Q9Y4C0 1643 aa21.36■■□□□ 1.01
NUP54-205ENST00000507257 TTC14Q96N46 770 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 GDPD2Q9HCC8 539 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.35■■□□□ 1.01
NUP54-205ENST00000507257 TTC21BQ7Z4L5 1316 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 RAD50Q92878 1312 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 MCM10Q7L590 875 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 KIAA1524Q8TCG1 905 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 TTC12Q9H892 705 aaPredicted RBP21.35■■□□□ 1.01
NUP54-205ENST00000507257 OVOS2A0A0J9YW53 1432 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 OVOS2Q6IE36 1432 aa21.35■■□□□ 1.01
NUP54-205ENST00000507257 TRIM6-TRIM34B2RNG4 842 aa21.34■■□□□ 1.01
NUP54-205ENST00000507257 HCLS1P14317 486 aaPredicted RBP21.34■■□□□ 1.01
NUP54-205ENST00000507257 CRYBG1Q9Y4K1 1723 aa21.34■■□□□ 1.01
NUP54-205ENST00000507257 G2E3Q7L622 706 aa21.33■■□□□ 1.01
NUP54-205ENST00000507257 RILPL2Q969X0 211 aa21.33■■□□□ 1.01
NUP54-205ENST00000507257 UPF3BQ9BZI7 483 aaKnown RBP21.33■■□□□ 1.01
NUP54-205ENST00000507257 LRRC37A3O60309 1634 aa21.33■■□□□ 1.01
NUP54-205ENST00000507257 STX6O43752 255 aa21.33■■□□□ 1
NUP54-205ENST00000507257 PEAK1Q9H792 1746 aa21.33■■□□□ 1
NUP54-205ENST00000507257 F13A1P00488 732 aa21.32■■□□□ 1
NUP54-205ENST00000507257 CNPY2Q9Y2B0 182 aa21.32■■□□□ 1
NUP54-205ENST00000507257 PDIA4P13667 645 aaKnown RBP21.31■■□□□ 1
NUP54-205ENST00000507257 SLC4A10Q6U841 1118 aa21.31■■□□□ 1
NUP54-205ENST00000507257 ZNF830Q96NB3 372 aaPredicted RBP21.31■■□□□ 1
NUP54-205ENST00000507257 PPP6R1Q9UPN7 881 aa21.31■■□□□ 1
NUP54-205ENST00000507257 LIMCH1Q9UPQ0 1083 aa21.31■■□□□ 1
NUP54-205ENST00000507257 GOLGA6L6A8MZA4 724 aa21.31■■□□□ 1
NUP54-205ENST00000507257 F6X3S4 739 aa21.31■■□□□ 1
NUP54-205ENST00000507257 RAB11FIP3O75154 756 aa21.31■■□□□ 1
NUP54-205ENST00000507257 TSHZ3Q63HK5 1081 aa21.31■■□□□ 1
NUP54-205ENST00000507257 ANKRD7Q92527 254 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms