RNA–Protein interactions for RNA: ENST00000506858.2

SCAMP1-202, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,603 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-202ENST00000506858 IL17REQ8NFR9 667 aa11.68□□□□□ -0.54
SCAMP1-202ENST00000506858 SYTL4Q96C24 671 aaPredicted RBP11.68□□□□□ -0.54
SCAMP1-202ENST00000506858 PCDH11XQ9BZA7 1347 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 PCDH11YQ9BZA8 1340 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 SPDYE4A6NLX3 237 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 TRIM37O94972 964 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 NEFMP07197 916 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 GAS2L2Q8NHY3 880 aa11.67□□□□□ -0.54
SCAMP1-202ENST00000506858 PARP4Q9UKK3 1724 aaKnown RBP11.66□□□□□ -0.54
SCAMP1-202ENST00000506858 AKAP4Q5JQC9 854 aa11.66□□□□□ -0.54
SCAMP1-202ENST00000506858 PNNQ9H307 717 aaKnown RBP11.66□□□□□ -0.54
SCAMP1-202ENST00000506858 SHANK3Q9BYB0 1731 aa11.66□□□□□ -0.54
SCAMP1-202ENST00000506858 GNAT3A8MTJ3 354 aa11.65□□□□□ -0.54
SCAMP1-202ENST00000506858 RNMTO43148 476 aaKnown RBP11.65□□□□□ -0.54
SCAMP1-202ENST00000506858 MIS18AQ9NYP9 233 aa11.65□□□□□ -0.54
SCAMP1-202ENST00000506858 TRIM35Q9UPQ4 493 aa11.65□□□□□ -0.54
SCAMP1-202ENST00000506858 KDM6AO15550 1401 aaPredicted RBP11.65□□□□□ -0.55
SCAMP1-202ENST00000506858 FXR2P51116 673 aaKnown RBP eCLIP11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 NKX1-1Q15270 411 aaPredicted RBP11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 PIP4P2Q8N4L2 257 aa11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 MAP3K5Q99683 1374 aa11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 PKD1L3Q7Z443 1732 aa11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 FAM196AQ6ZSG2 479 aa11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 NFATC2IPQ8NCF5 419 aa11.64□□□□□ -0.55
SCAMP1-202ENST00000506858 PIGBQ92521 554 aa11.63□□□□□ -0.55
SCAMP1-202ENST00000506858 RTF1Q92541 710 aaKnown RBP11.63□□□□□ -0.55
SCAMP1-202ENST00000506858 YTHDC1Q96MU7 727 aaKnown RBP11.63□□□□□ -0.55
SCAMP1-202ENST00000506858 KCNQ3O43525 872 aa11.62□□□□□ -0.55
SCAMP1-202ENST00000506858 CABP4P57796 275 aa11.62□□□□□ -0.55
SCAMP1-202ENST00000506858 SLC39A6Q13433 755 aa11.62□□□□□ -0.55
SCAMP1-202ENST00000506858 DCAF5Q96JK2 942 aa11.62□□□□□ -0.55
SCAMP1-202ENST00000506858 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
SCAMP1-202ENST00000506858 KCNQ4P56696 695 aa11.61□□□□□ -0.55
SCAMP1-202ENST00000506858 HNRNPUQ00839 825 aaKnown RBP eCLIP11.61□□□□□ -0.55
SCAMP1-202ENST00000506858 ASAP1Q9ULH1 1129 aa11.61□□□□□ -0.55
SCAMP1-202ENST00000506858 LAS1LQ9Y4W2 734 aaKnown RBP11.61□□□□□ -0.55
SCAMP1-202ENST00000506858 HSP90AB1P08238 724 aaKnown RBP11.6□□□□□ -0.55
SCAMP1-202ENST00000506858 DEFB132Q7Z7B7 95 aa11.6□□□□□ -0.55
SCAMP1-202ENST00000506858 WWC1Q8IX03 1113 aa11.6□□□□□ -0.55
SCAMP1-202ENST00000506858 SLC52A2Q9HAB3 445 aa11.6□□□□□ -0.55
SCAMP1-202ENST00000506858 TMOD3Q9NYL9 352 aa11.6□□□□□ -0.55
SCAMP1-202ENST00000506858 DLG5Q8TDM6 1919 aa11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 TOGARAM1Q9Y4F4 1720 aa11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 ERVV-2B6SEH9 535 aa11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 APBA3O96018 575 aa11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 TEFQ10587 303 aa11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 BCL11BQ9C0K0 894 aaPredicted RBP11.59□□□□□ -0.55
SCAMP1-202ENST00000506858 UPF1Q92900 1129 aaKnown RBP eCLIP11.58□□□□□ -0.56
SCAMP1-202ENST00000506858 ATG3Q9NT62 314 aa11.58□□□□□ -0.56
SCAMP1-202ENST00000506858 DOT1LQ8TEK3 1739 aa11.58□□□□□ -0.56
SCAMP1-202ENST00000506858 CEMIPQ8WUJ3 1361 aa11.58□□□□□ -0.56
SCAMP1-202ENST00000506858 HTATSF1O43719 755 aaKnown RBP11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 PTCD1O75127 700 aaKnown RBP11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 EN1Q05925 392 aaPredicted RBP11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 CDCA7LQ96GN5 454 aa11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 BTBD11A6QL63 1104 aa11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 TAF7Q15545 349 aaPredicted RBP11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 KRT24Q2M2I5 525 aa11.57□□□□□ -0.56
SCAMP1-202ENST00000506858 BCL9O00512 1426 aa11.56□□□□□ -0.56
SCAMP1-202ENST00000506858 PLEKHG2Q9H7P9 1386 aa11.56□□□□□ -0.56
SCAMP1-202ENST00000506858 LMOD3Q0VAK6 560 aa11.56□□□□□ -0.56
SCAMP1-202ENST00000506858 TSR2Q969E8 191 aaKnown RBP11.56□□□□□ -0.56
SCAMP1-202ENST00000506858 SBF2Q86WG5 1849 aa11.56□□□□□ -0.56
SCAMP1-202ENST00000506858 PRAMEF22A3QJZ6 481 aa11.55□□□□□ -0.56
SCAMP1-202ENST00000506858 PROM2Q8N271 834 aa11.55□□□□□ -0.56
SCAMP1-202ENST00000506858 SLC4A9Q96Q91 983 aa11.55□□□□□ -0.56
SCAMP1-202ENST00000506858 SCN11AQ9UI33 1791 aa11.55□□□□□ -0.56
SCAMP1-202ENST00000506858 ITGB4P16144 1822 aa11.54□□□□□ -0.56
SCAMP1-202ENST00000506858 EZH2Q15910 746 aaKnown RBP11.54□□□□□ -0.56
SCAMP1-202ENST00000506858 TSPYL4Q9UJ04 414 aa11.54□□□□□ -0.56
SCAMP1-202ENST00000506858 ZNF521Q96K83 1311 aa11.54□□□□□ -0.56
SCAMP1-202ENST00000506858 CCDC27Q2M243 656 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 SMIM5Q71RC9 77 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 ZNF496Q96IT1 587 aaPredicted RBP11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 MBIPQ9NS73 344 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 VIRMAQ69YN4 1812 aaKnown RBP11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 ELL2O00472 640 aaPredicted RBP11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 CHL1O00533 1208 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 SF3B2Q13435 895 aaKnown RBP11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 ZNF790Q6PG37 636 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 LRRC4BQ9NT99 713 aa11.53□□□□□ -0.56
SCAMP1-202ENST00000506858 PALLDQ8WX93 1383 aa11.52□□□□□ -0.56
SCAMP1-202ENST00000506858 BTAF1O14981 1849 aa11.52□□□□□ -0.56
SCAMP1-202ENST00000506858 NHSQ6T4R5 1651 aa11.52□□□□□ -0.57
SCAMP1-202ENST00000506858 ADAMTS7Q9UKP4 1686 aa11.52□□□□□ -0.57
SCAMP1-202ENST00000506858 ZNF853P0CG23 659 aa11.52□□□□□ -0.57
SCAMP1-202ENST00000506858 ITPK1Q13572 414 aa11.52□□□□□ -0.57
SCAMP1-202ENST00000506858 LOC102724428A0A0B4J2F2 783 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 SIK1P57059 783 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 TXNRD1Q16881 649 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 WDR63Q8IWG1 891 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 TTC5Q8N0Z6 440 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 CFAP44Q96MT7 982 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 CAMKK2Q96RR4 588 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 MRC1P22897 1456 aa11.51□□□□□ -0.57
SCAMP1-202ENST00000506858 ATP6V1AP38606 617 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 BAG6P46379 1132 aa11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 PIP4K2AP48426 406 aaPredicted RBP11.5□□□□□ -0.57
SCAMP1-202ENST00000506858 EIF4A1P60842 406 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms