RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 LMOD3Q0VAK6 560 aa16.91■□□□□ 0.3
TCOF1-210ENST00000506767 NEUROD2Q15784 382 aa16.91■□□□□ 0.3
TCOF1-210ENST00000506767 PLSCR1O15162 318 aa16.9■□□□□ 0.3
TCOF1-210ENST00000506767 APBA3O96018 575 aa16.9■□□□□ 0.3
TCOF1-210ENST00000506767 RGPD3A6NKT7 1758 aaPredicted RBP16.89■□□□□ 0.3
TCOF1-210ENST00000506767 RGPD4Q7Z3J3 1758 aa16.89■□□□□ 0.3
TCOF1-210ENST00000506767 CCDC27Q2M243 656 aa16.89■□□□□ 0.29
TCOF1-210ENST00000506767 TEFQ10587 303 aa16.88■□□□□ 0.29
TCOF1-210ENST00000506767 NGEFQ8N5V2 710 aa16.88■□□□□ 0.29
TCOF1-210ENST00000506767 THUMPD2Q9BTF0 503 aaKnown RBP16.88■□□□□ 0.29
TCOF1-210ENST00000506767 PAPPAQ13219 1627 aa16.88■□□□□ 0.29
TCOF1-210ENST00000506767 ATG3Q9NT62 314 aa16.87■□□□□ 0.29
TCOF1-210ENST00000506767 ASAP1Q9ULH1 1129 aa16.87■□□□□ 0.29
TCOF1-210ENST00000506767 LY75O60449 1722 aa16.87■□□□□ 0.29
TCOF1-210ENST00000506767 BAG6P46379 1132 aa16.86■□□□□ 0.29
TCOF1-210ENST00000506767 TAF7Q15545 349 aaPredicted RBP16.86■□□□□ 0.29
TCOF1-210ENST00000506767 SMARCC1Q92922 1105 aaPredicted RBP16.86■□□□□ 0.29
TCOF1-210ENST00000506767 CAMKK2Q96RR4 588 aa16.86■□□□□ 0.29
TCOF1-210ENST00000506767 SENP3-EIF4A1A0A087X0R7 540 aa16.85■□□□□ 0.29
TCOF1-210ENST00000506767 EN1Q05925 392 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-210ENST00000506767 WWC1Q8IX03 1113 aa16.85■□□□□ 0.29
TCOF1-210ENST00000506767 PROM2Q8N271 834 aa16.84■□□□□ 0.29
TCOF1-210ENST00000506767 PALLDQ8WX93 1383 aa16.84■□□□□ 0.29
TCOF1-210ENST00000506767 UBR2Q8IWV8 1755 aa16.84■□□□□ 0.29
TCOF1-210ENST00000506767 BTBD11A6QL63 1104 aa16.83■□□□□ 0.28
TCOF1-210ENST00000506767 SLC39A6Q13433 755 aa16.83■□□□□ 0.28
TCOF1-210ENST00000506767 EZH2Q15910 746 aaKnown RBP16.83■□□□□ 0.28
TCOF1-210ENST00000506767 BABAM1Q9NWV8 329 aa16.83■□□□□ 0.28
TCOF1-210ENST00000506767 KDM3BQ7LBC6 1761 aa16.82■□□□□ 0.28
TCOF1-210ENST00000506767 ZNF831Q5JPB2 1677 aa16.82■□□□□ 0.28
TCOF1-210ENST00000506767 RREB1Q92766 1687 aa16.82■□□□□ 0.28
TCOF1-210ENST00000506767 ZNF521Q96K83 1311 aa16.82■□□□□ 0.28
TCOF1-210ENST00000506767 ZNF790Q6PG37 636 aa16.82■□□□□ 0.28
TCOF1-210ENST00000506767 KCPQ6ZWJ8 1503 aa16.81■□□□□ 0.28
TCOF1-210ENST00000506767 CHL1O00533 1208 aa16.81■□□□□ 0.28
TCOF1-210ENST00000506767 ZNF853P0CG23 659 aa16.81■□□□□ 0.28
TCOF1-210ENST00000506767 TXNRD1Q16881 649 aa16.81■□□□□ 0.28
TCOF1-210ENST00000506767 SALL2Q9Y467 1007 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-210ENST00000506767 KCNQ3O43525 872 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 CALD1Q05682 793 aaKnown RBP16.8■□□□□ 0.28
TCOF1-210ENST00000506767 SLC27A3Q5K4L6 730 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 WDR63Q8IWG1 891 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 CFAP44Q96MT7 982 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 SLC4A9Q96Q91 983 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 MIS18AQ9NYP9 233 aa16.8■□□□□ 0.28
TCOF1-210ENST00000506767 CICQ96RK0 1608 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-210ENST00000506767 IL16Q14005 1332 aa16.79■□□□□ 0.28
TCOF1-210ENST00000506767 LOC102724428A0A0B4J2F2 783 aa16.79■□□□□ 0.28
TCOF1-210ENST00000506767 SIK1P57059 783 aa16.79■□□□□ 0.28
TCOF1-210ENST00000506767 LRRC4BQ9NT99 713 aa16.79■□□□□ 0.28
TCOF1-210ENST00000506767 SRCAPQ6ZRS2 3230 aa16.79■□□□□ 0.28
TCOF1-210ENST00000506767 TTC5Q8N0Z6 440 aa16.78■□□□□ 0.28
TCOF1-210ENST00000506767 IFT57Q9NWB7 429 aa16.78■□□□□ 0.28
TCOF1-210ENST00000506767 CCNL1Q9UK58 526 aaPredicted RBP16.78■□□□□ 0.28
TCOF1-210ENST00000506767 NUP188Q5SRE5 1749 aa16.78■□□□□ 0.28
TCOF1-210ENST00000506767 TAF1LQ8IZX4 1826 aa16.77■□□□□ 0.28
TCOF1-210ENST00000506767 PTCD1O75127 700 aaKnown RBP16.77■□□□□ 0.28
TCOF1-210ENST00000506767 GNAI1P63096 354 aa16.77■□□□□ 0.28
TCOF1-210ENST00000506767 VSIG10Q8N0Z9 540 aa16.77■□□□□ 0.28
TCOF1-210ENST00000506767 ZNF496Q96IT1 587 aaPredicted RBP16.77■□□□□ 0.28
TCOF1-210ENST00000506767 RBM42Q9BTD8 480 aaKnown RBP16.77■□□□□ 0.28
TCOF1-210ENST00000506767 TSPYL4Q9UJ04 414 aa16.77■□□□□ 0.28
TCOF1-210ENST00000506767 HEG1Q9ULI3 1381 aa16.77■□□□□ 0.27
TCOF1-210ENST00000506767 TJP1Q07157 1748 aa16.76■□□□□ 0.27
TCOF1-210ENST00000506767 PSDA5PKW4 1024 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-210ENST00000506767 ATP6V1AP38606 617 aa16.76■□□□□ 0.27
TCOF1-210ENST00000506767 KCNQ4P56696 695 aa16.76■□□□□ 0.27
TCOF1-210ENST00000506767 EIF4A1P60842 406 aaKnown RBP16.76■□□□□ 0.27
TCOF1-210ENST00000506767 FMNL2Q96PY5 1086 aa16.76■□□□□ 0.27
TCOF1-210ENST00000506767 C5P01031 1676 aa16.75■□□□□ 0.27
TCOF1-210ENST00000506767 ITPK1Q13572 414 aa16.75■□□□□ 0.27
TCOF1-210ENST00000506767 MBIPQ9NS73 344 aa16.75■□□□□ 0.27
TCOF1-210ENST00000506767 LAS1LQ9Y4W2 734 aaKnown RBP16.75■□□□□ 0.27
TCOF1-210ENST00000506767 COL5A3P25940 1745 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-210ENST00000506767 HNRNPUQ00839 825 aaKnown RBP eCLIP16.74■□□□□ 0.27
TCOF1-210ENST00000506767 SPINK5Q9NQ38 1064 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-210ENST00000506767 HMGB2P26583 209 aaKnown RBP16.73■□□□□ 0.27
TCOF1-210ENST00000506767 DNAJC10Q8IXB1 793 aa16.72■□□□□ 0.27
TCOF1-210ENST00000506767 LINC00116Q8NCU8 138 aa16.72■□□□□ 0.27
TCOF1-210ENST00000506767 C4BP0C0L5 1744 aa16.71■□□□□ 0.27
TCOF1-210ENST00000506767 GIGYF1O75420 1035 aaPredicted RBP16.71■□□□□ 0.27
TCOF1-210ENST00000506767 SNRPA1P09661 255 aaKnown RBP16.71■□□□□ 0.27
TCOF1-210ENST00000506767 GOLGA2Q08379 1002 aa16.71■□□□□ 0.27
TCOF1-210ENST00000506767 TEX13AQ9BXU3 409 aaPredicted RBP16.71■□□□□ 0.27
TCOF1-210ENST00000506767 PRAMEF22A3QJZ6 481 aa16.7■□□□□ 0.26
TCOF1-210ENST00000506767 TSR2Q969E8 191 aaKnown RBP16.7■□□□□ 0.26
TCOF1-210ENST00000506767 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
TCOF1-210ENST00000506767 CYP19A1P11511 503 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-210ENST00000506767 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 RC3H1Q5TC82 1133 aaKnown RBP16.69■□□□□ 0.26
TCOF1-210ENST00000506767 TRMT2AQ8IZ69 625 aaKnown RBP16.69■□□□□ 0.26
TCOF1-210ENST00000506767 ANO8Q9HCE9 1232 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-210ENST00000506767 USP16Q9Y5T5 823 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 LAMB4A4D0S4 1761 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 ZBED9Q6R2W3 1325 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 CNTNAP4Q9C0A0 1308 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 FANCIQ9NVI1 1328 aa16.69■□□□□ 0.26
TCOF1-210ENST00000506767 MYH14Q7Z406 1995 aaKnown RBP16.68■□□□□ 0.26
TCOF1-210ENST00000506767 E9PSI1 815 aa16.68■□□□□ 0.26
TCOF1-210ENST00000506767 R3HDM1Q15032 1099 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms