RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 KAT6BQ8WYB5 2073 aa26.48■■□□□ 1.83
CTSD-206ENST00000497544 BCL9O00512 1426 aa26.47■■□□□ 1.83
CTSD-206ENST00000497544 ATP10DQ9P241 1426 aa26.47■■□□□ 1.83
CTSD-206ENST00000497544 PKD1L3Q7Z443 1732 aa26.46■■□□□ 1.83
CTSD-206ENST00000497544 CYP27B1O15528 508 aa26.46■■□□□ 1.83
CTSD-206ENST00000497544 COL24A1Q17RW2 1714 aa26.45■■□□□ 1.83
CTSD-206ENST00000497544 PHKG2P15735 406 aa26.44■■□□□ 1.82
CTSD-206ENST00000497544 AKAP4Q5JQC9 854 aa26.43■■□□□ 1.82
CTSD-206ENST00000497544 KLHL34Q8N239 644 aa26.43■■□□□ 1.82
CTSD-206ENST00000497544 HSP90AB1P08238 724 aaKnown RBP26.42■■□□□ 1.82
CTSD-206ENST00000497544 NFE2L2Q16236 605 aa26.41■■□□□ 1.82
CTSD-206ENST00000497544 GNAT3A8MTJ3 354 aa26.4■■□□□ 1.82
CTSD-206ENST00000497544 APAF1O14727 1248 aa26.39■■□□□ 1.82
CTSD-206ENST00000497544 TMPOP42166 694 aaKnown RBP26.39■■□□□ 1.82
CTSD-206ENST00000497544 NKX1-1Q15270 411 aaPredicted RBP26.39■■□□□ 1.82
CTSD-206ENST00000497544 NEUROD2Q15784 382 aa26.38■■□□□ 1.81
CTSD-206ENST00000497544 NLGN2Q8NFZ4 835 aa26.38■■□□□ 1.81
CTSD-206ENST00000497544 RTF1Q92541 710 aaKnown RBP26.38■■□□□ 1.81
CTSD-206ENST00000497544 YBX3P16989 372 aaKnown RBP eCLIP26.37■■□□□ 1.81
CTSD-206ENST00000497544 RIPK4P57078 832 aa26.37■■□□□ 1.81
CTSD-206ENST00000497544 MPRIPQ6WCQ1 1025 aa26.37■■□□□ 1.81
CTSD-206ENST00000497544 DCAF5Q96JK2 942 aa26.37■■□□□ 1.81
CTSD-206ENST00000497544 NHSQ6T4R5 1651 aa26.36■■□□□ 1.81
CTSD-206ENST00000497544 GPBP1L1Q9HC44 474 aaPredicted RBP26.36■■□□□ 1.81
CTSD-206ENST00000497544 RRP7AQ9Y3A4 280 aaKnown RBP26.36■■□□□ 1.81
CTSD-206ENST00000497544 QSER1Q2KHR3 1735 aa26.36■■□□□ 1.81
CTSD-206ENST00000497544 HTATSF1O43719 755 aaKnown RBP26.34■■□□□ 1.81
CTSD-206ENST00000497544 ACSBG1Q96GR2 724 aa26.34■■□□□ 1.81
CTSD-206ENST00000497544 RNMTO43148 476 aaKnown RBP26.33■■□□□ 1.81
CTSD-206ENST00000497544 ZNF827Q17R98 1081 aa26.33■■□□□ 1.81
CTSD-206ENST00000497544 DLG5Q8TDM6 1919 aa26.32■■□□□ 1.8
CTSD-206ENST00000497544 LMOD3Q0VAK6 560 aa26.32■■□□□ 1.8
CTSD-206ENST00000497544 LGR6Q9HBX8 967 aa26.32■■□□□ 1.8
CTSD-206ENST00000497544 GRIN3BO60391 1043 aa26.31■■□□□ 1.8
CTSD-206ENST00000497544 SYTL4Q96C24 671 aaPredicted RBP26.31■■□□□ 1.8
CTSD-206ENST00000497544 ERVV-2B6SEH9 535 aa26.3■■□□□ 1.8
CTSD-206ENST00000497544 CAPN15O75808 1086 aa26.3■■□□□ 1.8
CTSD-206ENST00000497544 PRIM1P49642 420 aaKnown RBP26.3■■□□□ 1.8
CTSD-206ENST00000497544 IL17REQ8NFR9 667 aa26.3■■□□□ 1.8
CTSD-206ENST00000497544 ADCY9O60503 1353 aa26.3■■□□□ 1.8
CTSD-206ENST00000497544 TUBGCP6Q96RT7 1819 aa26.3■■□□□ 1.8
CTSD-206ENST00000497544 CABP4P57796 275 aa26.29■■□□□ 1.8
CTSD-206ENST00000497544 BTAF1O14981 1849 aa26.28■■□□□ 1.8
CTSD-206ENST00000497544 POLD1P28340 1107 aa26.28■■□□□ 1.8
CTSD-206ENST00000497544 DCTN1Q14203 1278 aa26.28■■□□□ 1.8
CTSD-206ENST00000497544 MCM10Q7L590 875 aa26.28■■□□□ 1.8
CTSD-206ENST00000497544 SALL2Q9Y467 1007 aaPredicted RBP26.28■■□□□ 1.8
CTSD-206ENST00000497544 ZNF526Q8TF50 670 aaPredicted RBP26.27■■□□□ 1.8
CTSD-206ENST00000497544 KDM6AO15550 1401 aaPredicted RBP26.27■■□□□ 1.8
CTSD-206ENST00000497544 VIRMAQ69YN4 1812 aaKnown RBP26.26■■□□□ 1.79
CTSD-206ENST00000497544 SCN11AQ9UI33 1791 aa26.26■■□□□ 1.79
CTSD-206ENST00000497544 TEFQ10587 303 aa26.26■■□□□ 1.79
CTSD-206ENST00000497544 TMOD3Q9NYL9 352 aa26.26■■□□□ 1.79
CTSD-206ENST00000497544 NGEFQ8N5V2 710 aa26.25■■□□□ 1.79
CTSD-206ENST00000497544 TRIM35Q9UPQ4 493 aa26.25■■□□□ 1.79
CTSD-206ENST00000497544 NFATC2IPQ8NCF5 419 aa26.24■■□□□ 1.79
CTSD-206ENST00000497544 SLC16A10Q8TF71 515 aa26.24■■□□□ 1.79
CTSD-206ENST00000497544 SLC52A2Q9HAB3 445 aa26.24■■□□□ 1.79
CTSD-206ENST00000497544 DOT1LQ8TEK3 1739 aa26.23■■□□□ 1.79
CTSD-206ENST00000497544 NCBP3Q53F19 620 aaKnown RBP26.23■■□□□ 1.79
CTSD-206ENST00000497544 COL13A1Q5TAT6 717 aaPredicted RBP26.23■■□□□ 1.79
CTSD-206ENST00000497544 ITGB4P16144 1822 aa26.23■■□□□ 1.79
CTSD-206ENST00000497544 DNAJC5GQ8N7S2 189 aa26.22■■□□□ 1.79
CTSD-206ENST00000497544 PIGBQ92521 554 aa26.22■■□□□ 1.79
CTSD-206ENST00000497544 CEMIPQ8WUJ3 1361 aa26.21■■□□□ 1.79
CTSD-206ENST00000497544 CCDC27Q2M243 656 aa26.21■■□□□ 1.79
CTSD-206ENST00000497544 THUMPD2Q9BTF0 503 aaKnown RBP26.21■■□□□ 1.79
CTSD-206ENST00000497544 LRRC4BQ9NT99 713 aa26.21■■□□□ 1.79
CTSD-206ENST00000497544 TOGARAM1Q9Y4F4 1720 aa26.19■■□□□ 1.78
CTSD-206ENST00000497544 APLP1P51693 650 aa26.19■■□□□ 1.78
CTSD-206ENST00000497544 AKT1S1Q96B36 256 aa26.19■■□□□ 1.78
CTSD-206ENST00000497544 ADAMTS7Q9UKP4 1686 aa26.19■■□□□ 1.78
CTSD-206ENST00000497544 PNPLA7Q6ZV29 1317 aa26.18■■□□□ 1.78
CTSD-206ENST00000497544 TAF7Q15545 349 aaPredicted RBP26.18■■□□□ 1.78
CTSD-206ENST00000497544 WWC1Q8IX03 1113 aa26.18■■□□□ 1.78
CTSD-206ENST00000497544 CALD1Q05682 793 aaKnown RBP26.17■■□□□ 1.78
CTSD-206ENST00000497544 KIF3CO14782 793 aa26.16■■□□□ 1.78
CTSD-206ENST00000497544 HNRNPUQ00839 825 aaKnown RBP eCLIP26.16■■□□□ 1.78
CTSD-206ENST00000497544 BTBD11A6QL63 1104 aa26.15■■□□□ 1.78
CTSD-206ENST00000497544 PRELPP51888 382 aa26.15■■□□□ 1.78
CTSD-206ENST00000497544 SMARCC1Q92922 1105 aaPredicted RBP26.14■■□□□ 1.78
CTSD-206ENST00000497544 LAS1LQ9Y4W2 734 aaKnown RBP26.14■■□□□ 1.78
CTSD-206ENST00000497544 ASAP1Q9ULH1 1129 aa26.13■■□□□ 1.77
CTSD-206ENST00000497544 WDR90Q96KV7 1748 aa26.13■■□□□ 1.77
CTSD-206ENST00000497544 MRC1P22897 1456 aa26.12■■□□□ 1.77
CTSD-206ENST00000497544 WDR63Q8IWG1 891 aa26.12■■□□□ 1.77
CTSD-206ENST00000497544 ATG3Q9NT62 314 aa26.12■■□□□ 1.77
CTSD-206ENST00000497544 SLC39A6Q13433 755 aa26.11■■□□□ 1.77
CTSD-206ENST00000497544 MIS18AQ9NYP9 233 aa26.11■■□□□ 1.77
CTSD-206ENST00000497544 TTC5Q8N0Z6 440 aa26.1■■□□□ 1.77
CTSD-206ENST00000497544 GNAI1P63096 354 aa26.09■■□□□ 1.77
CTSD-206ENST00000497544 TNS4Q8IZW8 715 aa26.09■■□□□ 1.77
CTSD-206ENST00000497544 BABAM1Q9NWV8 329 aa26.09■■□□□ 1.77
CTSD-206ENST00000497544 TSPYL4Q9UJ04 414 aa26.09■■□□□ 1.77
CTSD-206ENST00000497544 SIPA1L3O60292 1781 aaPredicted RBP26.09■■□□□ 1.77
CTSD-206ENST00000497544 ZNF790Q6PG37 636 aa26.08■■□□□ 1.77
CTSD-206ENST00000497544 CFAP44Q96MT7 982 aa26.08■■□□□ 1.77
CTSD-206ENST00000497544 CHL1O00533 1208 aa26.07■■□□□ 1.76
CTSD-206ENST00000497544 RBM42Q9BTD8 480 aaKnown RBP26.07■■□□□ 1.76
CTSD-206ENST00000497544 IL16Q14005 1332 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms