RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 SEC24BO95487 1268 aa14.54□□□□□ -0.08
SNRNP200-208ENST00000497539 CADPS2Q86UW7 1296 aa14.54□□□□□ -0.08
SNRNP200-208ENST00000497539 SMC5Q8IY18 1101 aa14.53□□□□□ -0.08
SNRNP200-208ENST00000497539 ZBTB7BO15156 539 aaPredicted RBP14.53□□□□□ -0.08
SNRNP200-208ENST00000497539 FOXO3O43524 673 aa14.53□□□□□ -0.08
SNRNP200-208ENST00000497539 ATF3P18847 181 aa14.53□□□□□ -0.08
SNRNP200-208ENST00000497539 RGPD5Q99666 1765 aa14.53□□□□□ -0.08
SNRNP200-208ENST00000497539 INTS3Q68E01 1043 aaKnown RBP14.52□□□□□ -0.08
SNRNP200-208ENST00000497539 NBPF6Q5VWK0 638 aa14.51□□□□□ -0.09
SNRNP200-208ENST00000497539 NBPF4Q96M43 638 aa14.51□□□□□ -0.09
SNRNP200-208ENST00000497539 SLKQ9H2G2 1235 aaPredicted RBP14.51□□□□□ -0.09
SNRNP200-208ENST00000497539 NPHP3Q7Z494 1330 aa14.51□□□□□ -0.09
SNRNP200-208ENST00000497539 PXDNLA1KZ92 1463 aa14.51□□□□□ -0.09
SNRNP200-208ENST00000497539 BBXQ8WY36 941 aaPredicted RBP14.5□□□□□ -0.09
SNRNP200-208ENST00000497539 PDZRN3Q9UPQ7 1066 aa14.5□□□□□ -0.09
SNRNP200-208ENST00000497539 PKD1L3Q7Z443 1732 aa14.5□□□□□ -0.09
SNRNP200-208ENST00000497539 CPDO75976 1380 aa14.5□□□□□ -0.09
SNRNP200-208ENST00000497539 KDM4FA0A1W2PPD8 638 aa14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 AMOTQ4VCS5 1084 aa14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 TSPYL4Q9UJ04 414 aa14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 ABCA3Q99758 1704 aa14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 GTF2E1P29083 439 aaPredicted RBP14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 IL17REQ8NFR9 667 aa14.49□□□□□ -0.09
SNRNP200-208ENST00000497539 NHSL1Q5SYE7 1610 aa14.48□□□□□ -0.09
SNRNP200-208ENST00000497539 PARP4Q9UKK3 1724 aaKnown RBP14.48□□□□□ -0.09
SNRNP200-208ENST00000497539 TAF7Q15545 349 aaPredicted RBP14.48□□□□□ -0.09
SNRNP200-208ENST00000497539 HOXB7P09629 217 aa14.47□□□□□ -0.09
SNRNP200-208ENST00000497539 AKAP4Q5JQC9 854 aa14.47□□□□□ -0.09
SNRNP200-208ENST00000497539 ELL2O00472 640 aaPredicted RBP14.47□□□□□ -0.09
SNRNP200-208ENST00000497539 SCN11AQ9UI33 1791 aa14.46□□□□□ -0.09
SNRNP200-208ENST00000497539 SPATA31A3Q5VYP0 1347 aa14.46□□□□□ -0.09
SNRNP200-208ENST00000497539 PLEKHO1Q53GL0 409 aaPredicted RBP14.46□□□□□ -0.09
SNRNP200-208ENST00000497539 ANKRD24Q8TF21 1146 aa14.46□□□□□ -0.09
SNRNP200-208ENST00000497539 ERBB3P21860 1342 aa14.46□□□□□ -0.1
SNRNP200-208ENST00000497539 GCC1Q96CN9 775 aa14.46□□□□□ -0.1
SNRNP200-208ENST00000497539 LTV1Q96GA3 475 aaPredicted RBP14.46□□□□□ -0.1
SNRNP200-208ENST00000497539 ATP10DQ9P241 1426 aa14.45□□□□□ -0.1
SNRNP200-208ENST00000497539 NUCB1Q02818 461 aa14.45□□□□□ -0.1
SNRNP200-208ENST00000497539 KRT24Q2M2I5 525 aa14.45□□□□□ -0.1
SNRNP200-208ENST00000497539 MRC1P22897 1456 aa14.45□□□□□ -0.1
SNRNP200-208ENST00000497539 HSPA2P54652 639 aa14.44□□□□□ -0.1
SNRNP200-208ENST00000497539 XPCQ01831 940 aaPredicted RBP14.44□□□□□ -0.1
SNRNP200-208ENST00000497539 SPRYD3Q8NCJ5 442 aa14.44□□□□□ -0.1
SNRNP200-208ENST00000497539 USHBP1Q8N6Y0 703 aa14.44□□□□□ -0.1
SNRNP200-208ENST00000497539 CCDC30Q5VVM6 783 aa14.43□□□□□ -0.1
SNRNP200-208ENST00000497539 HEG1Q9ULI3 1381 aa14.43□□□□□ -0.1
SNRNP200-208ENST00000497539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.42□□□□□ -0.11e-8■□□□□ 8.5
SNRNP200-208ENST00000497539 HSP90AA1P07900 732 aaKnown RBP14.42□□□□□ -0.1
SNRNP200-208ENST00000497539 CHRM1P11229 460 aaPredicted RBP14.42□□□□□ -0.1
SNRNP200-208ENST00000497539 LRRC59Q96AG4 307 aaKnown RBP14.42□□□□□ -0.1
SNRNP200-208ENST00000497539 AXIN2Q9Y2T1 843 aa14.42□□□□□ -0.1
SNRNP200-208ENST00000497539 SOS2Q07890 1332 aaPredicted RBP14.42□□□□□ -0.1
SNRNP200-208ENST00000497539 CCT4P50991 539 aaKnown RBP14.41□□□□□ -0.1
SNRNP200-208ENST00000497539 MIS18AQ9NYP9 233 aa14.41□□□□□ -0.1
SNRNP200-208ENST00000497539 BCCIPQ9P287 314 aaKnown RBP eCLIP14.41□□□□□ -0.1
SNRNP200-208ENST00000497539 SLC4A2P04920 1241 aa14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 BRINP3Q76B58 766 aa14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 SIRT2Q8IXJ6 389 aa14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 ZNF530Q6P9A1 599 aaPredicted RBP14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 RPAP2Q8IXW5 612 aaPredicted RBP14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 STK31Q9BXU1 1019 aa14.4□□□□□ -0.1
SNRNP200-208ENST00000497539 RNMTO43148 476 aaKnown RBP14.39□□□□□ -0.11
SNRNP200-208ENST00000497539 EIF4A1P60842 406 aaKnown RBP14.39□□□□□ -0.11
SNRNP200-208ENST00000497539 ANKRD44Q8N8A2 993 aa14.39□□□□□ -0.11
SNRNP200-208ENST00000497539 CNKSR2Q8WXI2 1034 aa14.39□□□□□ -0.11
SNRNP200-208ENST00000497539 IBTKQ9P2D0 1353 aaPredicted RBP14.39□□□□□ -0.11
SNRNP200-208ENST00000497539 CHD1LQ86WJ1 897 aa14.38□□□□□ -0.11
SNRNP200-208ENST00000497539 MEGF6O75095 1541 aa14.38□□□□□ -0.11
SNRNP200-208ENST00000497539 BECN1Q14457 450 aa14.38□□□□□ -0.11
SNRNP200-208ENST00000497539 DCTPP1Q9H773 170 aa14.38□□□□□ -0.11
SNRNP200-208ENST00000497539 C1orf141Q5JVX7 400 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 TEX2Q8IWB9 1127 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 FLIIQ13045 1269 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 LMOD2Q6P5Q4 547 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 G2E3Q7L622 706 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 LGR6Q9HBX8 967 aa14.37□□□□□ -0.11
SNRNP200-208ENST00000497539 GZF1Q9H116 711 aaPredicted RBP14.36□□□□□ -0.11
SNRNP200-208ENST00000497539 KDM6AO15550 1401 aaPredicted RBP14.36□□□□□ -0.11
SNRNP200-208ENST00000497539 CEP85Q6P2H3 762 aa14.36□□□□□ -0.11
SNRNP200-208ENST00000497539 ZFP91Q96JP5 570 aaPredicted RBP14.36□□□□□ -0.11
SNRNP200-208ENST00000497539 COL22A1Q8NFW1 1626 aaPredicted RBP14.35□□□□□ -0.11
SNRNP200-208ENST00000497539 RRAGDQ9NQL2 400 aaPredicted RBP14.35□□□□□ -0.11
SNRNP200-208ENST00000497539 ZNF335Q9H4Z2 1342 aaPredicted RBP14.35□□□□□ -0.11
SNRNP200-208ENST00000497539 PAPPAQ13219 1627 aa14.35□□□□□ -0.11
SNRNP200-208ENST00000497539 LAMB4A4D0S4 1761 aa14.35□□□□□ -0.11
SNRNP200-208ENST00000497539 ZBTB7CA1YPR0 619 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 C5P01031 1676 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 GLI3P10071 1580 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 TEFQ10587 303 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 SHANK3Q9BYB0 1731 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 TBC1D2Q9BYX2 928 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 SLAIN2Q9P270 581 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 ZC3H6P61129 1189 aaKnown RBP14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 BMP2KLQ5H9B9 411 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 DDX17Q92841 729 aaKnown RBP14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 C1orf115Q9H7X2 142 aa14.34□□□□□ -0.11
SNRNP200-208ENST00000497539 AHDC1Q5TGY3 1603 aaPredicted RBP14.33□□□□□ -0.11
SNRNP200-208ENST00000497539 ANTXR1Q9H6X2 564 aa14.33□□□□□ -0.12
SNRNP200-208ENST00000497539 COL5A2P05997 1499 aaPredicted RBP14.33□□□□□ -0.12
SNRNP200-208ENST00000497539 BTBD11A6QL63 1104 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms