RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 WASLO00401 505 aaPredicted RBP11.69□□□□□ -0.54
SF3B1-212ENST00000496458 OGFOD1Q8N543 542 aa11.69□□□□□ -0.54
SF3B1-212ENST00000496458 SPATA31C2B4DYI2 1134 aa11.68□□□□□ -0.54
SF3B1-212ENST00000496458 GTF2E1P29083 439 aaPredicted RBP11.68□□□□□ -0.54
SF3B1-212ENST00000496458 TMEM214Q6NUQ4 689 aaKnown RBP11.68□□□□□ -0.54
SF3B1-212ENST00000496458 NBPF10Q6P3W6 841 aaKnown RBP11.68□□□□□ -0.54
SF3B1-212ENST00000496458 NBPF15Q8N660 670 aa11.68□□□□□ -0.54
SF3B1-212ENST00000496458 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.68□□□□□ -0.54
SF3B1-212ENST00000496458 TPCN2Q8NHX9 752 aa11.68□□□□□ -0.54
SF3B1-212ENST00000496458 DNAAF2Q9NVR5 837 aaKnown RBP11.68□□□□□ -0.54
SF3B1-212ENST00000496458 CFAP70Q5T0N1 1121 aa11.67□□□□□ -0.54
SF3B1-212ENST00000496458 TAS1R3Q7RTX0 852 aa11.67□□□□□ -0.54
SF3B1-212ENST00000496458 ZNF594Q96JF6 807 aaPredicted RBP11.67□□□□□ -0.54
SF3B1-212ENST00000496458 ZBTB7BO15156 539 aaPredicted RBP11.66□□□□□ -0.54
SF3B1-212ENST00000496458 SMTNP53814 917 aa11.66□□□□□ -0.54
SF3B1-212ENST00000496458 GNASQ5JWF2 1037 aa11.66□□□□□ -0.54
SF3B1-212ENST00000496458 LCE2AQ5TA79 106 aaPredicted RBP11.66□□□□□ -0.54
SF3B1-212ENST00000496458 LCE2CQ5TA81 110 aa11.66□□□□□ -0.54
SF3B1-212ENST00000496458 CCDC102BQ68D86 513 aa11.66□□□□□ -0.54
SF3B1-212ENST00000496458 ZNF358Q9NW07 568 aa11.66□□□□□ -0.54
SF3B1-212ENST00000496458 ERBB4Q15303 1308 aa11.65□□□□□ -0.54
SF3B1-212ENST00000496458 RASA1P20936 1047 aa11.65□□□□□ -0.54
SF3B1-212ENST00000496458 PHKA2P46019 1235 aa11.65□□□□□ -0.54
SF3B1-212ENST00000496458 IRF7Q92985 503 aa11.65□□□□□ -0.54
SF3B1-212ENST00000496458 RFX1P22670 979 aa11.64□□□□□ -0.55
SF3B1-212ENST00000496458 ITGA6P23229 1130 aa11.64□□□□□ -0.55
SF3B1-212ENST00000496458 LARGE2Q8N3Y3 721 aa11.64□□□□□ -0.55
SF3B1-212ENST00000496458 SLC4A9Q96Q91 983 aa11.64□□□□□ -0.55
SF3B1-212ENST00000496458 BACH1O14867 736 aa11.63□□□□□ -0.55
SF3B1-212ENST00000496458 C4orf17Q53FE4 359 aa11.63□□□□□ -0.55
SF3B1-212ENST00000496458 KANK4Q5T7N3 995 aaPredicted RBP11.63□□□□□ -0.55
SF3B1-212ENST00000496458 PPARGC1BQ86YN6 1023 aaKnown RBP11.63□□□□□ -0.55
SF3B1-212ENST00000496458 RHBDD1Q8TEB9 315 aa11.63□□□□□ -0.55
SF3B1-212ENST00000496458 TIMMDC1Q9NPL8 285 aa11.63□□□□□ -0.55
SF3B1-212ENST00000496458 A6NJY4 79 aa11.62□□□□□ -0.55
SF3B1-212ENST00000496458 WDR44Q5JSH3 913 aa11.62□□□□□ -0.55
SF3B1-212ENST00000496458 LARP1Q6PKG0 1096 aaKnown RBP11.62□□□□□ -0.55
SF3B1-212ENST00000496458 SIX5Q8N196 739 aa11.62□□□□□ -0.55
SF3B1-212ENST00000496458 GAS2L1Q99501 681 aaPredicted RBP11.62□□□□□ -0.55
SF3B1-212ENST00000496458 VRTNQ9H8Y1 702 aa11.62□□□□□ -0.55
SF3B1-212ENST00000496458 DYRK1BQ9Y463 629 aa11.62□□□□□ -0.55
SF3B1-212ENST00000496458 CDC14CA4D256 554 aa11.61□□□□□ -0.55
SF3B1-212ENST00000496458 MTFR1Q15390 333 aa11.61□□□□□ -0.55
SF3B1-212ENST00000496458 CRTC2Q53ET0 693 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-212ENST00000496458 CCDC97Q96F63 343 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-212ENST00000496458 RBM19Q9Y4C8 960 aaKnown RBP11.61□□□□□ -0.55
SF3B1-212ENST00000496458 USP3Q9Y6I4 520 aa11.61□□□□□ -0.55
SF3B1-212ENST00000496458 RIPOR1Q6ZS17 1223 aa11.6□□□□□ -0.55
SF3B1-212ENST00000496458 SFI1A8K8P3 1242 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L15C9J2P7 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L10C9JJH3 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L13C9JLJ4 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L12C9JPN9 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L11C9JVI0 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L21D6R901 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L18D6R9N7 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L22D6RA61 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L17D6RBQ6 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L19D6RCP7 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L20D6RJB6 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 VSIG8P0DPA2 414 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 PLA2G4AP47712 749 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 USP17L24Q0WX57 530 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 CDCA8Q53HL2 280 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 TNS4Q8IZW8 715 aa11.59□□□□□ -0.55
SF3B1-212ENST00000496458 CUEDC1Q9NWM3 386 aaPredicted RBP11.59□□□□□ -0.55
SF3B1-212ENST00000496458 IQSEC3Q9UPP2 1182 aaPredicted RBP11.59□□□□□ -0.55
SF3B1-212ENST00000496458 DKK1O94907 266 aa11.58□□□□□ -0.56
SF3B1-212ENST00000496458 GMPRP36959 345 aa11.58□□□□□ -0.56
SF3B1-212ENST00000496458 PTK7Q13308 1070 aa11.58□□□□□ -0.56
SF3B1-212ENST00000496458 VWA5B2Q8N398 1253 aa11.58□□□□□ -0.56
SF3B1-212ENST00000496458 NIFKQ9BYG3 293 aaKnown RBP11.58□□□□□ -0.56
SF3B1-212ENST00000496458 FAM196BA6NMK8 535 aa11.57□□□□□ -0.56
SF3B1-212ENST00000496458 CDK2AP1O14519 115 aa11.57□□□□□ -0.56
SF3B1-212ENST00000496458 EPHA4P54764 986 aa11.57□□□□□ -0.56
SF3B1-212ENST00000496458 NANOS1Q8WY41 292 aaKnown RBP11.57□□□□□ -0.56
SF3B1-212ENST00000496458 GPAMQ9HCL2 828 aa11.57□□□□□ -0.56
SF3B1-212ENST00000496458 SCHIP1Q9P0W5 487 aaPredicted RBP11.57□□□□□ -0.56
SF3B1-212ENST00000496458 A0A1B0GTH6 734 aa11.56□□□□□ -0.56
SF3B1-212ENST00000496458 ERICH6Q7L0X2 663 aa11.56□□□□□ -0.56
SF3B1-212ENST00000496458 TSEN2Q8NCE0 465 aaKnown RBP11.56□□□□□ -0.56
SF3B1-212ENST00000496458 CABP1Q9NZU7 370 aa11.56□□□□□ -0.56
SF3B1-212ENST00000496458 SERPINA10Q9UK55 444 aa11.56□□□□□ -0.56
SF3B1-212ENST00000496458 F11P03951 625 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 SEC13P55735 322 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 DPYDQ12882 1025 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 TBCELQ5QJ74 424 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 SV2AQ7L0J3 742 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 SLC9A9Q8IVB4 645 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 ZNF295-AS1Q8N0V1 137 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 C1orf115Q9H7X2 142 aa11.55□□□□□ -0.56
SF3B1-212ENST00000496458 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.54□□□□□ -0.56
SF3B1-212ENST00000496458 M0R2N6 131 aa11.54□□□□□ -0.56
SF3B1-212ENST00000496458 FOXK2Q01167 660 aa11.54□□□□□ -0.56
SF3B1-212ENST00000496458 ANKMY2Q8IV38 441 aa11.54□□□□□ -0.56
SF3B1-212ENST00000496458 TRIM22Q8IYM9 498 aa11.54□□□□□ -0.56
SF3B1-212ENST00000496458 CCDC82Q8N4S0 544 aa11.54□□□□□ -0.56
SF3B1-212ENST00000496458 GPR161Q8N6U8 529 aaKnown RBP11.54□□□□□ -0.56
SF3B1-212ENST00000496458 ZNF837Q96EG3 531 aaPredicted RBP11.54□□□□□ -0.56
SF3B1-212ENST00000496458 TIMELESSQ9UNS1 1208 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms