RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 MRC1P22897 1456 aa22.45■■□□□ 1.18
HDAC6-235ENST00000495515 ADAMTS7Q9UKP4 1686 aa22.45■■□□□ 1.18
HDAC6-235ENST00000495515 SCN11AQ9UI33 1791 aa22.44■■□□□ 1.18
HDAC6-235ENST00000495515 PALLDQ8WX93 1383 aa22.43■■□□□ 1.18
HDAC6-235ENST00000495515 EZH2Q15910 746 aaKnown RBP22.43■■□□□ 1.18
HDAC6-235ENST00000495515 NCBP3Q53F19 620 aaKnown RBP22.43■■□□□ 1.18
HDAC6-235ENST00000495515 NGEFQ8N5V2 710 aa22.43■■□□□ 1.18
HDAC6-235ENST00000495515 ATG3Q9NT62 314 aa22.43■■□□□ 1.18
HDAC6-235ENST00000495515 BTAF1O14981 1849 aa22.43■■□□□ 1.18
HDAC6-235ENST00000495515 TAF7Q15545 349 aaPredicted RBP22.42■■□□□ 1.18
HDAC6-235ENST00000495515 SLC27A3Q5K4L6 730 aa22.42■■□□□ 1.18
HDAC6-235ENST00000495515 ASAP1Q9ULH1 1129 aa22.42■■□□□ 1.18
HDAC6-235ENST00000495515 CALD1Q05682 793 aaKnown RBP22.41■■□□□ 1.18
HDAC6-235ENST00000495515 TXNRD1Q16881 649 aa22.41■■□□□ 1.18
HDAC6-235ENST00000495515 TTC5Q8N0Z6 440 aa22.41■■□□□ 1.18
HDAC6-235ENST00000495515 TRIM35Q9UPQ4 493 aa22.41■■□□□ 1.18
HDAC6-235ENST00000495515 ITGB4P16144 1822 aa22.41■■□□□ 1.18
HDAC6-235ENST00000495515 BTBD11A6QL63 1104 aa22.4■■□□□ 1.18
HDAC6-235ENST00000495515 CCDC27Q2M243 656 aa22.39■■□□□ 1.17
HDAC6-235ENST00000495515 THUMPD2Q9BTF0 503 aaKnown RBP22.39■■□□□ 1.17
HDAC6-235ENST00000495515 CCNL1Q9UK58 526 aaPredicted RBP22.39■■□□□ 1.17
HDAC6-235ENST00000495515 RGPD3A6NKT7 1758 aaPredicted RBP22.38■■□□□ 1.17
HDAC6-235ENST00000495515 RGPD4Q7Z3J3 1758 aa22.38■■□□□ 1.17
HDAC6-235ENST00000495515 LOC102724428A0A0B4J2F2 783 aa22.37■■□□□ 1.17
HDAC6-235ENST00000495515 SIK1P57059 783 aa22.37■■□□□ 1.17
HDAC6-235ENST00000495515 ZNF790Q6PG37 636 aa22.37■■□□□ 1.17
HDAC6-235ENST00000495515 PROM2Q8N271 834 aa22.37■■□□□ 1.17
HDAC6-235ENST00000495515 RBM42Q9BTD8 480 aaKnown RBP22.37■■□□□ 1.17
HDAC6-235ENST00000495515 DLG5Q8TDM6 1919 aa22.36■■□□□ 1.17
HDAC6-235ENST00000495515 SLC39A6Q13433 755 aa22.36■■□□□ 1.17
HDAC6-235ENST00000495515 BABAM1Q9NWV8 329 aa22.36■■□□□ 1.17
HDAC6-235ENST00000495515 PTCD1O75127 700 aaKnown RBP22.35■■□□□ 1.17
HDAC6-235ENST00000495515 NBPF14Q5TI25 921 aa22.35■■□□□ 1.17
HDAC6-235ENST00000495515 ATP6V1AP38606 617 aa22.34■■□□□ 1.17
HDAC6-235ENST00000495515 WWC1Q8IX03 1113 aa22.33■■□□□ 1.17
HDAC6-235ENST00000495515 FMNL2Q96PY5 1086 aa22.33■■□□□ 1.17
HDAC6-235ENST00000495515 SALL2Q9Y467 1007 aaPredicted RBP22.33■■□□□ 1.17
HDAC6-235ENST00000495515 SENP3-EIF4A1A0A087X0R7 540 aa22.32■■□□□ 1.16
HDAC6-235ENST00000495515 LRRC4BQ9NT99 713 aa22.32■■□□□ 1.16
HDAC6-235ENST00000495515 TSPYL4Q9UJ04 414 aa22.32■■□□□ 1.16
HDAC6-235ENST00000495515 RREB1Q92766 1687 aa22.31■■□□□ 1.16
HDAC6-235ENST00000495515 VSIG10Q8N0Z9 540 aa22.31■■□□□ 1.16
HDAC6-235ENST00000495515 CFAP44Q96MT7 982 aa22.31■■□□□ 1.16
HDAC6-235ENST00000495515 LAS1LQ9Y4W2 734 aaKnown RBP22.31■■□□□ 1.16
HDAC6-235ENST00000495515 VIRMAQ69YN4 1812 aaKnown RBP22.31■■□□□ 1.16
HDAC6-235ENST00000495515 LRP5O75197 1615 aa22.31■■□□□ 1.16
HDAC6-235ENST00000495515 GNAI1P63096 354 aa22.3■■□□□ 1.16
HDAC6-235ENST00000495515 IFT57Q9NWB7 429 aa22.3■■□□□ 1.16
HDAC6-235ENST00000495515 MIS18AQ9NYP9 233 aa22.3■■□□□ 1.16
HDAC6-235ENST00000495515 LY75O60449 1722 aa22.3■■□□□ 1.16
HDAC6-235ENST00000495515 KCNQ4P56696 695 aa22.29■■□□□ 1.16
HDAC6-235ENST00000495515 WDR63Q8IWG1 891 aa22.29■■□□□ 1.16
HDAC6-235ENST00000495515 ZNF496Q96IT1 587 aaPredicted RBP22.29■■□□□ 1.16
HDAC6-235ENST00000495515 TEX13AQ9BXU3 409 aaPredicted RBP22.29■■□□□ 1.16
HDAC6-235ENST00000495515 STK32BQ9NY57 414 aa22.29■■□□□ 1.16
HDAC6-235ENST00000495515 SIPA1L3O60292 1781 aaPredicted RBP22.29■■□□□ 1.16
HDAC6-235ENST00000495515 CHL1O00533 1208 aa22.28■■□□□ 1.16
HDAC6-235ENST00000495515 KCNQ3O43525 872 aa22.28■■□□□ 1.16
HDAC6-235ENST00000495515 NUP188Q5SRE5 1749 aa22.28■■□□□ 1.16
HDAC6-235ENST00000495515 IL16Q14005 1332 aa22.28■■□□□ 1.16
HDAC6-235ENST00000495515 PAPPAQ13219 1627 aa22.28■■□□□ 1.16
HDAC6-235ENST00000495515 HEG1Q9ULI3 1381 aa22.27■■□□□ 1.16
HDAC6-235ENST00000495515 SLC4A9Q96Q91 983 aa22.27■■□□□ 1.16
HDAC6-235ENST00000495515 KCPQ6ZWJ8 1503 aa22.26■■□□□ 1.15
HDAC6-235ENST00000495515 ITPK1Q13572 414 aa22.26■■□□□ 1.15
HDAC6-235ENST00000495515 STARD3NLO95772 234 aa22.25■■□□□ 1.15
HDAC6-235ENST00000495515 SNRPA1P09661 255 aaKnown RBP22.25■■□□□ 1.15
HDAC6-235ENST00000495515 ZNF853P0CG23 659 aa22.25■■□□□ 1.15
HDAC6-235ENST00000495515 PSDA5PKW4 1024 aaPredicted RBP22.24■■□□□ 1.15
HDAC6-235ENST00000495515 EIF4A1P60842 406 aaKnown RBP22.24■■□□□ 1.15
HDAC6-235ENST00000495515 SLC15A2Q16348 729 aa22.24■■□□□ 1.15
HDAC6-235ENST00000495515 DNAJC10Q8IXB1 793 aa22.24■■□□□ 1.15
HDAC6-235ENST00000495515 AK7Q96M32 723 aa22.24■■□□□ 1.15
HDAC6-235ENST00000495515 ZNF831Q5JPB2 1677 aa22.23■■□□□ 1.15
HDAC6-235ENST00000495515 LINC00116Q8NCU8 138 aa22.23■■□□□ 1.15
HDAC6-235ENST00000495515 RC3H1Q5TC82 1133 aaKnown RBP22.22■■□□□ 1.15
HDAC6-235ENST00000495515 AKT1S1Q96B36 256 aa22.22■■□□□ 1.15
HDAC6-235ENST00000495515 MBIPQ9NS73 344 aa22.22■■□□□ 1.15
HDAC6-235ENST00000495515 TFCP2L1Q9NZI6 479 aa22.22■■□□□ 1.15
HDAC6-235ENST00000495515 UBR2Q8IWV8 1755 aa22.21■■□□□ 1.15
HDAC6-235ENST00000495515 HNRNPUQ00839 825 aaKnown RBP eCLIP22.21■■□□□ 1.15
HDAC6-235ENST00000495515 ANO8Q9HCE9 1232 aaPredicted RBP22.21■■□□□ 1.15
HDAC6-235ENST00000495515 CNTNAP4Q9C0A0 1308 aa22.21■■□□□ 1.15
HDAC6-235ENST00000495515 MYH16Q9H6N6 1097 aa22.2■■□□□ 1.14
HDAC6-235ENST00000495515 ZNF521Q96K83 1311 aa22.2■■□□□ 1.14
HDAC6-235ENST00000495515 GIGYF1O75420 1035 aaPredicted RBP22.19■■□□□ 1.14
HDAC6-235ENST00000495515 CYP19A1P11511 503 aaPredicted RBP22.19■■□□□ 1.14
HDAC6-235ENST00000495515 GOLGA2Q08379 1002 aa22.19■■□□□ 1.14
HDAC6-235ENST00000495515 ZNF827Q17R98 1081 aa22.19■■□□□ 1.14
HDAC6-235ENST00000495515 FLAD1Q8NFF5 587 aa22.19■■□□□ 1.14
HDAC6-235ENST00000495515 KDM3BQ7LBC6 1761 aa22.19■■□□□ 1.14
HDAC6-235ENST00000495515 C5P01031 1676 aa22.18■■□□□ 1.14
HDAC6-235ENST00000495515 GNPATO15228 680 aa22.18■■□□□ 1.14
HDAC6-235ENST00000495515 CRKLP46109 303 aaKnown RBP22.18■■□□□ 1.14
HDAC6-235ENST00000495515 R3HDM1Q15032 1099 aaKnown RBP22.18■■□□□ 1.14
HDAC6-235ENST00000495515 CCDC87Q9NVE4 849 aa22.18■■□□□ 1.14
HDAC6-235ENST00000495515 CICQ96RK0 1608 aaPredicted RBP22.17■■□□□ 1.14
HDAC6-235ENST00000495515 RTCBQ9Y3I0 505 aaKnown RBP22.17■■□□□ 1.14
HDAC6-235ENST00000495515 HOXB7P09629 217 aa22.16■■□□□ 1.14
HDAC6-235ENST00000495515 CHMP4AQ9BY43 222 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms