RNA–Protein interactions for RNA: ENST00000495172.1

GARNL3-219, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-219ENST00000495172 MPRIPQ6WCQ1 1025 aa13.15□□□□□ -0.3
GARNL3-219ENST00000495172 C4AP0C0L4 1744 aa13.14□□□□□ -0.31
GARNL3-219ENST00000495172 GNPATO15228 680 aa13.14□□□□□ -0.31
GARNL3-219ENST00000495172 DALRD3Q5D0E6 543 aaKnown RBP13.14□□□□□ -0.31
GARNL3-219ENST00000495172 ZCRB1Q8TBF4 217 aaKnown RBP13.14□□□□□ -0.31
GARNL3-219ENST00000495172 PIM2Q9P1W9 311 aa13.14□□□□□ -0.31
GARNL3-219ENST00000495172 FAM208AQ9UK61 1670 aaKnown RBP13.14□□□□□ -0.31
GARNL3-219ENST00000495172 SSFA2P28290 1259 aa13.13□□□□□ -0.31
GARNL3-219ENST00000495172 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
GARNL3-219ENST00000495172 MCOLN1Q9GZU1 580 aa13.13□□□□□ -0.31
GARNL3-219ENST00000495172 SOX10P56693 466 aa13.12□□□□□ -0.31
GARNL3-219ENST00000495172 ITPK1Q13572 414 aa13.12□□□□□ -0.31
GARNL3-219ENST00000495172 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.12□□□□□ -0.31
GARNL3-219ENST00000495172 CASP8AP2Q9UKL3 1982 aa13.12□□□□□ -0.31
GARNL3-219ENST00000495172 MAP2P11137 1827 aaKnown RBP13.11□□□□□ -0.31
GARNL3-219ENST00000495172 CCDC87Q9NVE4 849 aa13.11□□□□□ -0.31
GARNL3-219ENST00000495172 KDM6AO15550 1401 aaPredicted RBP13.11□□□□□ -0.31
GARNL3-219ENST00000495172 ITGB4P16144 1822 aa13.11□□□□□ -0.31
GARNL3-219ENST00000495172 NME9Q86XW9 330 aa13.1□□□□□ -0.31
GARNL3-219ENST00000495172 USHBP1Q8N6Y0 703 aa13.1□□□□□ -0.31
GARNL3-219ENST00000495172 PASKQ96RG2 1323 aa13.1□□□□□ -0.31
GARNL3-219ENST00000495172 NBPF1Q3BBV0 1214 aa13.09□□□□□ -0.31
GARNL3-219ENST00000495172 NSD3Q9BZ95 1437 aa13.09□□□□□ -0.31
GARNL3-219ENST00000495172 LMNB1P20700 586 aa13.08□□□□□ -0.32
GARNL3-219ENST00000495172 TMF1P82094 1093 aa13.08□□□□□ -0.32
GARNL3-219ENST00000495172 PRPF38BQ5VTL8 546 aaKnown RBP13.08□□□□□ -0.32
GARNL3-219ENST00000495172 TMEM88BA6NKF7 163 aa13.07□□□□□ -0.32
GARNL3-219ENST00000495172 FBLN1P23142 703 aa13.07□□□□□ -0.32
GARNL3-219ENST00000495172 GRM1Q13255 1194 aa13.07□□□□□ -0.32
GARNL3-219ENST00000495172 WDR33Q9C0J8 1336 aaKnown RBP13.07□□□□□ -0.32
GARNL3-219ENST00000495172 GYS1P13807 737 aa13.06□□□□□ -0.32
GARNL3-219ENST00000495172 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
GARNL3-219ENST00000495172 TTC21AQ8NDW8 1320 aa13.06□□□□□ -0.32
GARNL3-219ENST00000495172 LTBP1Q14766 1721 aa13.05□□□□□ -0.32
GARNL3-219ENST00000495172 PIGBQ92521 554 aa13.05□□□□□ -0.32
GARNL3-219ENST00000495172 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
GARNL3-219ENST00000495172 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 NFKBIEO00221 500 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 DDNO94850 711 aaPredicted RBP13.04□□□□□ -0.32
GARNL3-219ENST00000495172 ITGBL1O95965 494 aaPredicted RBP13.04□□□□□ -0.32
GARNL3-219ENST00000495172 SIK1P57059 783 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 DDR1Q08345 913 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 DGKZQ13574 1117 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 DEFB115Q30KQ5 88 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 ARHGEF1Q92888 912 aaKnown RBP13.04□□□□□ -0.32
GARNL3-219ENST00000495172 CENPJQ9HC77 1338 aaPredicted RBP13.04□□□□□ -0.32
GARNL3-219ENST00000495172 KTN1Q86UP2 1357 aaKnown RBP13.04□□□□□ -0.32
GARNL3-219ENST00000495172 A0A0C4DFX4 3053 aa13.04□□□□□ -0.32
GARNL3-219ENST00000495172 MAP2K1Q02750 393 aaPredicted RBP13.03□□□□□ -0.32
GARNL3-219ENST00000495172 FMR1Q06787 632 aaKnown RBP eCLIP13.03□□□□□ -0.32
GARNL3-219ENST00000495172 NLGN1Q8N2Q7 840 aa13.03□□□□□ -0.32
GARNL3-219ENST00000495172 ZC3H4Q9UPT8 1303 aaKnown RBP13.03□□□□□ -0.32
GARNL3-219ENST00000495172 RASSF10A6NK89 507 aa13.02□□□□□ -0.33
GARNL3-219ENST00000495172 IP6K1Q92551 441 aa13.02□□□□□ -0.33
GARNL3-219ENST00000495172 SRP68Q9UHB9 627 aaKnown RBP13.02□□□□□ -0.33
GARNL3-219ENST00000495172 ASAP1Q9ULH1 1129 aa13.02□□□□□ -0.33
GARNL3-219ENST00000495172 MON2Q7Z3U7 1717 aa13.02□□□□□ -0.33
GARNL3-219ENST00000495172 ATP6V1AP38606 617 aa13.01□□□□□ -0.33
GARNL3-219ENST00000495172 TRAPPC3LQ5T215 181 aa13.01□□□□□ -0.33
GARNL3-219ENST00000495172 SZT2Q5T011 3432 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 USP31Q70CQ4 1352 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 CYP27B1O15528 508 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 AOC2O75106 756 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 NBPF6Q5VWK0 638 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 CYP4F22Q6NT55 531 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 PAXIP1Q6ZW49 1069 aaPredicted RBP13□□□□□ -0.33
GARNL3-219ENST00000495172 SMARCC1Q92922 1105 aaPredicted RBP13□□□□□ -0.33
GARNL3-219ENST00000495172 NBPF4Q96M43 638 aa13□□□□□ -0.33
GARNL3-219ENST00000495172 ZNF692Q9BU19 519 aaPredicted RBP13□□□□□ -0.33
GARNL3-219ENST00000495172 ABT1Q9ULW3 272 aaKnown RBP13□□□□□ -0.33
GARNL3-219ENST00000495172 THSD7BQ9C0I4 1608 aa12.99□□□□□ -0.33
GARNL3-219ENST00000495172 FKBP8Q14318 412 aa12.99□□□□□ -0.33
GARNL3-219ENST00000495172 EAPPQ56P03 285 aaPredicted RBP12.99□□□□□ -0.33
GARNL3-219ENST00000495172 DPY19L2Q6NUT2 758 aa12.99□□□□□ -0.33
GARNL3-219ENST00000495172 SLC4A9Q96Q91 983 aa12.98□□□□□ -0.33
GARNL3-219ENST00000495172 RTCBQ9Y3I0 505 aaKnown RBP12.98□□□□□ -0.33
GARNL3-219ENST00000495172 ERFEQ4G0M1 354 aa12.97□□□□□ -0.33
GARNL3-219ENST00000495172 MAP1SQ66K74 1059 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-219ENST00000495172 LDHDQ86WU2 507 aa12.97□□□□□ -0.33
GARNL3-219ENST00000495172 CAPNS2Q96L46 248 aa12.97□□□□□ -0.33
GARNL3-219ENST00000495172 DICER1Q9UPY3 1922 aaKnown RBP12.97□□□□□ -0.33
GARNL3-219ENST00000495172 MKI67P46013 3256 aaKnown RBP12.97□□□□□ -0.33
GARNL3-219ENST00000495172 SBNO2Q9Y2G9 1366 aa12.96□□□□□ -0.33
GARNL3-219ENST00000495172 MYH14Q7Z406 1995 aaKnown RBP12.96□□□□□ -0.33
GARNL3-219ENST00000495172 HOXC9P31274 260 aa12.96□□□□□ -0.33
GARNL3-219ENST00000495172 RFC4P35249 363 aa12.96□□□□□ -0.33
GARNL3-219ENST00000495172 HABP4Q5JVS0 413 aaKnown RBP12.96□□□□□ -0.33
GARNL3-219ENST00000495172 GPR101Q96P66 508 aaPredicted RBP12.96□□□□□ -0.33
GARNL3-219ENST00000495172 BEGAINQ9BUH8 593 aa12.96□□□□□ -0.33
GARNL3-219ENST00000495172 TAF1DQ9H5J8 278 aaPredicted RBP12.96□□□□□ -0.33
GARNL3-219ENST00000495172 CLEC11AQ9Y240 323 aa12.96□□□□□ -0.33
GARNL3-219ENST00000495172 MAP3K19Q56UN5 1328 aa12.95□□□□□ -0.34
GARNL3-219ENST00000495172 DLL1O00548 723 aa12.95□□□□□ -0.34
GARNL3-219ENST00000495172 PCDH11XQ9BZA7 1347 aa12.94□□□□□ -0.34
GARNL3-219ENST00000495172 PCDH11YQ9BZA8 1340 aa12.94□□□□□ -0.34
GARNL3-219ENST00000495172 CUL9Q8IWT3 2517 aa12.94□□□□□ -0.34
GARNL3-219ENST00000495172 AFDNP55196 1824 aaKnown RBP12.93□□□□□ -0.34
GARNL3-219ENST00000495172 CD163L1Q9NR16 1453 aa12.93□□□□□ -0.34
GARNL3-219ENST00000495172 POLRMTO00411 1230 aaKnown RBP12.93□□□□□ -0.34
GARNL3-219ENST00000495172 RAPGEF4Q8WZA2 1011 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms