RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 UBE2HP62256 183 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 ANKRD7Q92527 254 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 STK26Q9P289 416 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 AOX1Q06278 1338 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 ALKQ9UM73 1620 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 CHL1O00533 1208 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 GADD45BO75293 160 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-230ENST00000495090 CHAF1AQ13111 956 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-230ENST00000495090 FOXD4L5Q5VV16 416 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-230ENST00000495090 KIAA1524Q8TCG1 905 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 FOXD4L4Q8WXT5 416 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-230ENST00000495090 MEIS3Q99687 375 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 SRCIN1Q9C0H9 1055 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 BCL2L12Q9HB09 334 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 PRDM10Q9NQV6 1147 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 ARHGEF10O15013 1369 aa11.68□□□□□ -0.54
SYNE1-230ENST00000495090 CTIFO43310 598 aaKnown RBP11.67□□□□□ -0.54
SYNE1-230ENST00000495090 SYCP1Q15431 976 aa11.67□□□□□ -0.54
SYNE1-230ENST00000495090 PPP4R3BQ5MIZ7 849 aa11.67□□□□□ -0.54
SYNE1-230ENST00000495090 FUCA2Q9BTY2 467 aa11.67□□□□□ -0.54
SYNE1-230ENST00000495090 CHMLP26374 656 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 CCT4P50991 539 aaKnown RBP11.66□□□□□ -0.54
SYNE1-230ENST00000495090 IDI1Q13907 227 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 NUTM2DQ5VT03 806 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-230ENST00000495090 FEZ1Q99689 392 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 TTC12Q9H892 705 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-230ENST00000495090 STAP2Q9UGK3 403 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 ZHX1Q9UKY1 873 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-230ENST00000495090 PALD1Q9ULE6 856 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 ATP6V1DQ9Y5K8 247 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 GOLGA6L6A8MZA4 724 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 PDCL2Q8N4E4 241 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 ARID3AQ99856 593 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 EMILIN1Q9Y6C2 1016 aa11.66□□□□□ -0.54
SYNE1-230ENST00000495090 MYO5BQ9ULV0 1848 aa11.65□□□□□ -0.54
SYNE1-230ENST00000495090 HCLS1P14317 486 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-230ENST00000495090 ZNF830Q96NB3 372 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-230ENST00000495090 ZSCAN22P10073 491 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-230ENST00000495090 HSPA4P34932 840 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 ATP2B3Q16720 1220 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 TAF3Q5VWG9 929 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 LRRCC1Q9C099 1032 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 ANO2Q9NQ90 1003 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 PREX1Q8TCU6 1659 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 FAM83GA6ND36 823 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 CBX1P83916 185 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.64□□□□□ -0.55
SYNE1-230ENST00000495090 GDPD2Q9HCC8 539 aa11.64□□□□□ -0.55
SYNE1-230ENST00000495090 MON2Q7Z3U7 1717 aa11.63□□□□□ -0.55
SYNE1-230ENST00000495090 APBB1O00213 710 aa11.63□□□□□ -0.55
SYNE1-230ENST00000495090 GNAI2P04899 355 aa11.63□□□□□ -0.55
SYNE1-230ENST00000495090 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.63□□□□□ -0.55
SYNE1-230ENST00000495090 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-230ENST00000495090 KRT24Q2M2I5 525 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 TSC1Q92574 1164 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 KCNF1Q9H3M0 494 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 DIP2CQ9Y2E4 1556 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 N4BP2Q86UW6 1770 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-230ENST00000495090 RIOK3O14730 519 aaKnown RBP11.62□□□□□ -0.55
SYNE1-230ENST00000495090 STX6O43752 255 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 PDIA4P13667 645 aaKnown RBP11.62□□□□□ -0.55
SYNE1-230ENST00000495090 FBLN1P23142 703 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 JARID2Q92833 1246 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-230ENST00000495090 CNPY2Q9Y2B0 182 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 CRB1P82279 1406 aa11.62□□□□□ -0.55
SYNE1-230ENST00000495090 TCHHQ07283 1943 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 F13A1P00488 732 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 KCNA4P22459 653 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 DCTN1Q14203 1278 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 C17orf53Q8N3J3 647 aaPredicted RBP11.61□□□□□ -0.55
SYNE1-230ENST00000495090 TTC14Q96N46 770 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 OGFRQ9NZT2 677 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 RAD50Q92878 1312 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 C3P01024 1663 aa11.61□□□□□ -0.55
SYNE1-230ENST00000495090 RIMBP3CA6NJZ7 1639 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 RIMBP3BA6NNM3 1639 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 RIMBP3Q9UFD9 1639 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 GNAI3P08754 354 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 COG3Q96JB2 828 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 UPF3BQ9BZI7 483 aaKnown RBP11.6□□□□□ -0.55
SYNE1-230ENST00000495090 ITSN1Q15811 1721 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 SLC4A2P04920 1241 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 CCDC192P0DO97 292 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 SYT1P21579 422 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 ATP8B2P98198 1209 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 GABPB1Q06547 395 aaPredicted RBP11.6□□□□□ -0.55
SYNE1-230ENST00000495090 AEBP1Q8IUX7 1158 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 PYCARDQ9ULZ3 195 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 LIMCH1Q9UPQ0 1083 aa11.6□□□□□ -0.55
SYNE1-230ENST00000495090 PXDNLA1KZ92 1463 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 SETD1AO15047 1707 aaKnown RBP11.59□□□□□ -0.55
SYNE1-230ENST00000495090 RGPD1P0DJD0 1748 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 TRIM6-TRIM34B2RNG4 842 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 NOL8Q76FK4 1167 aaKnown RBP11.59□□□□□ -0.55
SYNE1-230ENST00000495090 NME9Q86XW9 330 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 EXOC6BQ9Y2D4 811 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 AKAP12Q02952 1782 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 NEO1Q92859 1461 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 CCDC171Q6TFL3 1326 aa11.59□□□□□ -0.55
SYNE1-230ENST00000495090 SMTNL1A8MU46 457 aa11.58□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms