RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 LINC00116Q8NCU8 138 aa44.67■■■■■ 4.74
CBX4-203ENST00000494546 ARXQ96QS3 562 aa44.67■■■■■ 4.74
CBX4-203ENST00000494546 ITPK1Q13572 414 aa44.65■■■■■ 4.74
CBX4-203ENST00000494546 POLD1P28340 1107 aa44.64■■■■■ 4.74
CBX4-203ENST00000494546 MTHFSDQ2M296 383 aaKnown RBP44.64■■■■■ 4.74
CBX4-203ENST00000494546 NFATC2IPQ8NCF5 419 aa44.64■■■■■ 4.74
CBX4-203ENST00000494546 RBM42Q9BTD8 480 aaKnown RBP44.64■■■■■ 4.74
CBX4-203ENST00000494546 FHDC1Q9C0D6 1143 aaPredicted RBP44.64■■■■■ 4.74
CBX4-203ENST00000494546 FLAD1Q8NFF5 587 aa44.62■■■■■ 4.73
CBX4-203ENST00000494546 LGR6Q9HBX8 967 aa44.59■■■■■ 4.73
CBX4-203ENST00000494546 PHF14O94880 888 aa44.58■■■■■ 4.73
CBX4-203ENST00000494546 AMIGO3Q86WK7 504 aa44.58■■■■■ 4.73
CBX4-203ENST00000494546 SCN11AQ9UI33 1791 aa44.57■■■■■ 4.73
CBX4-203ENST00000494546 SLC4A9Q96Q91 983 aa44.57■■■■■ 4.73
CBX4-203ENST00000494546 SYT17Q9BSW7 474 aa44.57■■■■■ 4.73
CBX4-203ENST00000494546 SMIM5Q71RC9 77 aa44.56■■■■■ 4.72
CBX4-203ENST00000494546 NUDCQ9Y266 331 aa44.56■■■■■ 4.72
CBX4-203ENST00000494546 RNMTO43148 476 aaKnown RBP44.55■■■■■ 4.72
CBX4-203ENST00000494546 MSL1Q68DK7 614 aa44.55■■■■■ 4.72
CBX4-203ENST00000494546 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP44.53■■■■■ 4.72
CBX4-203ENST00000494546 DCAF8L1A6NGE4 600 aa44.53■■■■■ 4.72
CBX4-203ENST00000494546 GNPATO15228 680 aa44.53■■■■■ 4.72
CBX4-203ENST00000494546 PTCD1O75127 700 aaKnown RBP44.53■■■■■ 4.72
CBX4-203ENST00000494546 SLC52A2Q9HAB3 445 aa44.53■■■■■ 4.72
CBX4-203ENST00000494546 COL24A1Q17RW2 1714 aa44.51■■■■■ 4.72
CBX4-203ENST00000494546 KLHL34Q8N239 644 aa44.51■■■■■ 4.72
CBX4-203ENST00000494546 SSFA2P28290 1259 aa44.5■■■■■ 4.71
CBX4-203ENST00000494546 UBR3Q6ZT12 1888 aa44.5■■■■■ 4.71
CBX4-203ENST00000494546 GAS2L2Q8NHY3 880 aa44.48■■■■■ 4.71
CBX4-203ENST00000494546 U2AF1L5P0DN76 240 aaPredicted RBP44.47■■■■■ 4.71
CBX4-203ENST00000494546 PRKAR2BP31323 418 aa44.47■■■■■ 4.71
CBX4-203ENST00000494546 U2AF1Q01081 240 aaKnown RBP eCLIP44.47■■■■■ 4.717e-6■■■■□ 20
CBX4-203ENST00000494546 RSPH6AQ9H0K4 717 aa44.46■■■■■ 4.71
CBX4-203ENST00000494546 ZNF831Q5JPB2 1677 aa44.45■■■■■ 4.71
CBX4-203ENST00000494546 MRC1P22897 1456 aa44.44■■■■■ 4.7
CBX4-203ENST00000494546 MAP3K5Q99683 1374 aa44.43■■■■■ 4.7
CBX4-203ENST00000494546 DDX10Q13206 875 aaKnown RBP44.42■■■■■ 4.7
CBX4-203ENST00000494546 PHACTR3Q96KR7 559 aa44.42■■■■■ 4.7
CBX4-203ENST00000494546 RTCBQ9Y3I0 505 aaKnown RBP44.41■■■■■ 4.7
CBX4-203ENST00000494546 GNAT3A8MTJ3 354 aa44.4■■■■■ 4.7
CBX4-203ENST00000494546 SLC39A6Q13433 755 aa44.4■■■■■ 4.7
CBX4-203ENST00000494546 ADAMTS7Q9UKP4 1686 aa44.39■■■■■ 4.7
CBX4-203ENST00000494546 VIRMAQ69YN4 1812 aaKnown RBP44.39■■■■■ 4.7
CBX4-203ENST00000494546 RC3H1Q5TC82 1133 aaKnown RBP44.39■■■■■ 4.7
CBX4-203ENST00000494546 CNTNAP4Q9C0A0 1308 aa44.39■■■■■ 4.7
CBX4-203ENST00000494546 COL5A3P25940 1745 aaPredicted RBP44.38■■■■■ 4.69
CBX4-203ENST00000494546 FCHSD2O94868 740 aa44.35■■■■■ 4.69
CBX4-203ENST00000494546 TRAPPC3LQ5T215 181 aa44.35■■■■■ 4.69
CBX4-203ENST00000494546 IL17REQ8NFR9 667 aa44.34■■■■■ 4.69
CBX4-203ENST00000494546 TEFQ10587 303 aa44.32■■■■■ 4.69
CBX4-203ENST00000494546 RPS6KA4O75676 772 aa44.31■■■■■ 4.68
CBX4-203ENST00000494546 CRKLP46109 303 aaKnown RBP44.31■■■■■ 4.68
CBX4-203ENST00000494546 DNAJC10Q8IXB1 793 aa44.29■■■■■ 4.68
CBX4-203ENST00000494546 TJP1Q07157 1748 aa44.29■■■■■ 4.68
CBX4-203ENST00000494546 ADRA2BP18089 450 aa44.28■■■■■ 4.68
CBX4-203ENST00000494546 NLGN2Q8NFZ4 835 aa44.28■■■■■ 4.68
CBX4-203ENST00000494546 ARHGEF1Q92888 912 aaKnown RBP44.28■■■■■ 4.68
CBX4-203ENST00000494546 RALBP1Q15311 655 aa44.27■■■■■ 4.68
CBX4-203ENST00000494546 KCPQ6ZWJ8 1503 aa44.25■■■■■ 4.67
CBX4-203ENST00000494546 TTC5Q8N0Z6 440 aa44.25■■■■■ 4.67
CBX4-203ENST00000494546 MYH14Q7Z406 1995 aaKnown RBP44.25■■■■■ 4.67
CBX4-203ENST00000494546 CICQ96RK0 1608 aaPredicted RBP44.24■■■■■ 4.67
CBX4-203ENST00000494546 RFC4P35249 363 aa44.24■■■■■ 4.67
CBX4-203ENST00000494546 CEMIPQ8WUJ3 1361 aa44.2■■■■■ 4.67
CBX4-203ENST00000494546 INTS5Q6P9B9 1019 aaKnown RBP44.2■■■■■ 4.67
CBX4-203ENST00000494546 GPR162Q16538 588 aa44.19■■■■■ 4.66
CBX4-203ENST00000494546 RTF1Q92541 710 aaKnown RBP44.19■■■■■ 4.66
CBX4-203ENST00000494546 CCDC87Q9NVE4 849 aa44.19■■■■■ 4.66
CBX4-203ENST00000494546 YY1P25490 414 aa44.18■■■■■ 4.66
CBX4-203ENST00000494546 ZEB1P37275 1124 aaPredicted RBP44.18■■■■■ 4.66
CBX4-203ENST00000494546 PELP1Q8IZL8 1130 aaKnown RBP44.18■■■■■ 4.66
CBX4-203ENST00000494546 CD2APQ9Y5K6 639 aa44.18■■■■■ 4.66
CBX4-203ENST00000494546 NEFMP07197 916 aa44.17■■■■■ 4.66
CBX4-203ENST00000494546 CYP19A1P11511 503 aaPredicted RBP44.17■■■■■ 4.66
CBX4-203ENST00000494546 ZNF790Q6PG37 636 aa44.17■■■■■ 4.66
CBX4-203ENST00000494546 VSIG10Q8N0Z9 540 aa44.17■■■■■ 4.66
CBX4-203ENST00000494546 MMP10P09238 476 aa44.16■■■■■ 4.66
CBX4-203ENST00000494546 NLGN1Q8N2Q7 840 aa44.16■■■■■ 4.66
CBX4-203ENST00000494546 MCM10Q7L590 875 aa44.15■■■■■ 4.66
CBX4-203ENST00000494546 UBR2Q8IWV8 1755 aa44.14■■■■■ 4.66
CBX4-203ENST00000494546 SIPA1L3O60292 1781 aaPredicted RBP44.13■■■■■ 4.66
CBX4-203ENST00000494546 GYS1P13807 737 aa44.13■■■■■ 4.66
CBX4-203ENST00000494546 ZNF496Q96IT1 587 aaPredicted RBP44.13■■■■■ 4.66
CBX4-203ENST00000494546 BTBD11A6QL63 1104 aa44.12■■■■■ 4.65
CBX4-203ENST00000494546 C4AP0C0L4 1744 aa44.11■■■■■ 4.65
CBX4-203ENST00000494546 DCTN1Q14203 1278 aa44.1■■■■■ 4.65
CBX4-203ENST00000494546 SRP68Q9UHB9 627 aaKnown RBP44.1■■■■■ 4.65
CBX4-203ENST00000494546 MYBBP1AQ9BQG0 1328 aaKnown RBP44.08■■■■■ 4.65
CBX4-203ENST00000494546 ZBTB1Q9Y2K1 713 aa44.08■■■■■ 4.65
CBX4-203ENST00000494546 HEG1Q9ULI3 1381 aa44.07■■■■■ 4.65
CBX4-203ENST00000494546 SOS1Q07889 1333 aaPredicted RBP44.07■■■■■ 4.65
CBX4-203ENST00000494546 HTATSF1O43719 755 aaKnown RBP44.07■■■■■ 4.65
CBX4-203ENST00000494546 PLEKHF1Q96S99 279 aa44.07■■■■■ 4.65
CBX4-203ENST00000494546 USP42Q9H9J4 1324 aaKnown RBP44.06■■■■■ 4.64
CBX4-203ENST00000494546 FMNL2Q96PY5 1086 aa44.06■■■■■ 4.64
CBX4-203ENST00000494546 KCNQ3O43525 872 aa44.05■■■■■ 4.64
CBX4-203ENST00000494546 STARD3NLO95772 234 aa44.05■■■■■ 4.64
CBX4-203ENST00000494546 PNNQ9H307 717 aaKnown RBP44.05■■■■■ 4.64
CBX4-203ENST00000494546 MAPK8IP3Q9UPT6 1336 aa44.02■■■■■ 4.64
CBX4-203ENST00000494546 CANXP27824 592 aaKnown RBP44.02■■■■■ 4.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms