RNA–Protein interactions for RNA: ENST00000494018.1

NR1H3-225, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 510 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-225	ENST00000494018	PIGB	Q92521	554 aa		13.91	□□□□□ -0.18
NR1H3-225	ENST00000494018	NBPF4	Q96M43	638 aa		13.91	□□□□□ -0.18
NR1H3-225	ENST00000494018	NSD3	Q9BZ95	1437 aa		13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	C4A	P0C0L4	1744 aa		13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	TNRC18	O15417	2968 aa	Predicted RBP	13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	MAP2	P11137	1827 aa	Known RBP	13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	LOC102724428	A0A0B4J2F2	783 aa		13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	SIK1	P57059	783 aa		13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	SMARCC1	Q92922	1105 aa	Predicted RBP	13.9	□□□□□ -0.18
NR1H3-225	ENST00000494018	SBNO2	Q9Y2G9	1366 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	GLTPD2	A6NH11	291 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	POTEC	B2RU33	542 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	POTEI	P0CG38	1075 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	POTEJ	P0CG39	1038 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	HOXC9	P31274	260 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	AMPH	P49418	695 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	TMC1	Q8TDI8	760 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	CREBZF	Q9NS37	354 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	PARP3	Q9Y6F1	533 aa		13.89	□□□□□ -0.19
NR1H3-225	ENST00000494018	ATP6V1A	P38606	617 aa		13.88	□□□□□ -0.19
NR1H3-225	ENST00000494018	VEGFB	P49765	207 aa		13.88	□□□□□ -0.19
NR1H3-225	ENST00000494018	RAPGEF4	Q8WZA2	1011 aa		13.88	□□□□□ -0.19
NR1H3-225	ENST00000494018	MAP3K19	Q56UN5	1328 aa		13.88	□□□□□ -0.19
NR1H3-225	ENST00000494018	RAB3GAP2	Q9H2M9	1393 aa		13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	CYP27B1	O15528	508 aa		13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	TAT	P17735	454 aa	Predicted RBP	13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	TRAPPC3L	Q5T215	181 aa		13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	NLGN1	Q8N2Q7	840 aa		13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	ASAP1	Q9ULH1	1129 aa		13.87	□□□□□ -0.19
NR1H3-225	ENST00000494018	CNTNAP1	P78357	1384 aa		13.86	□□□□□ -0.19
NR1H3-225	ENST00000494018	HSPA8	P11142	646 aa	Known RBP	13.86	□□□□□ -0.19
NR1H3-225	ENST00000494018	GYS1	P13807	737 aa		13.86	□□□□□ -0.19
NR1H3-225	ENST00000494018	ARHGEF1	Q92888	912 aa	Known RBP	13.86	□□□□□ -0.19
NR1H3-225	ENST00000494018	TIAM2	Q8IVF5	1701 aa		13.86	□□□□□ -0.19
NR1H3-225	ENST00000494018	HMGB2	P26583	209 aa	Known RBP	13.85	□□□□□ -0.19
NR1H3-225	ENST00000494018	WBP1L	Q9NX94	342 aa		13.85	□□□□□ -0.19
NR1H3-225	ENST00000494018	CD163L1	Q9NR16	1453 aa		13.85	□□□□□ -0.19
NR1H3-225	ENST00000494018	PCDH11X	Q9BZA7	1347 aa		13.85	□□□□□ -0.19
NR1H3-225	ENST00000494018	PCDH11Y	Q9BZA8	1340 aa		13.85	□□□□□ -0.19
NR1H3-225	ENST00000494018	RGS19	P49795	217 aa		13.84	□□□□□ -0.19
NR1H3-225	ENST00000494018	SLC12A5	Q9H2X9	1139 aa		13.84	□□□□□ -0.19
NR1H3-225	ENST00000494018	RTCB	Q9Y3I0	505 aa	Known RBP	13.84	□□□□□ -0.19
NR1H3-225	ENST00000494018	VIRMA	Q69YN4	1812 aa	Known RBP	13.84	□□□□□ -0.19
NR1H3-225	ENST00000494018	PDE4DIP	Q5VU43	2346 aa		13.84	□□□□□ -0.19
NR1H3-225	ENST00000494018	LMNB1	P20700	586 aa		13.83	□□□□□ -0.2
NR1H3-225	ENST00000494018	RRS1	Q15050	365 aa	Known RBP	13.83	□□□□□ -0.2
NR1H3-225	ENST00000494018	CHADL	Q6NUI6	762 aa		13.83	□□□□□ -0.2
NR1H3-225	ENST00000494018	RFC4	P35249	363 aa		13.82	□□□□□ -0.2
NR1H3-225	ENST00000494018	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.82	□□□□□ -0.2
NR1H3-225	ENST00000494018	SRP68	Q9UHB9	627 aa	Known RBP	13.82	□□□□□ -0.2
NR1H3-225	ENST00000494018	DDR1	Q08345	913 aa		13.81	□□□□□ -0.2
NR1H3-225	ENST00000494018	FKBP8	Q14318	412 aa		13.8	□□□□□ -0.2
NR1H3-225	ENST00000494018	RBM42	Q9BTD8	480 aa	Known RBP	13.8	□□□□□ -0.2
NR1H3-225	ENST00000494018	TMOD3	Q9NYL9	352 aa		13.8	□□□□□ -0.2
NR1H3-225	ENST00000494018	TSKS	Q9UJT2	592 aa		13.8	□□□□□ -0.2
NR1H3-225	ENST00000494018	SLC4A9	Q96Q91	983 aa		13.79	□□□□□ -0.2
NR1H3-225	ENST00000494018	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.79	□□□□□ -0.2
NR1H3-225	ENST00000494018	CGNL1	Q0VF96	1302 aa		13.79	□□□□□ -0.2
NR1H3-225	ENST00000494018	KDM6A	O15550	1401 aa	Predicted RBP	13.79	□□□□□ -0.2
NR1H3-225	ENST00000494018	COG3	Q96JB2	828 aa		13.78	□□□□□ -0.2
NR1H3-225	ENST00000494018	ATG3	Q9NT62	314 aa		13.78	□□□□□ -0.2
NR1H3-225	ENST00000494018	EDC4	Q6P2E9	1401 aa	Known RBP	13.78	□□□□□ -0.2
NR1H3-225	ENST00000494018	MYH14	Q7Z406	1995 aa	Known RBP	13.78	□□□□□ -0.2
NR1H3-225	ENST00000494018		A0A1W2PP64	1363 aa		13.77	□□□□□ -0.21
NR1H3-225	ENST00000494018	DPY19L2	Q6NUT2	758 aa		13.77	□□□□□ -0.21
NR1H3-225	ENST00000494018	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.77	□□□□□ -0.21
NR1H3-225	ENST00000494018	TMEM88B	A6NKF7	163 aa		13.76	□□□□□ -0.21
NR1H3-225	ENST00000494018	NFKBIE	O00221	500 aa		13.76	□□□□□ -0.21
NR1H3-225	ENST00000494018	DDN	O94850	711 aa	Predicted RBP	13.76	□□□□□ -0.21
NR1H3-225	ENST00000494018	GRM1	Q13255	1194 aa		13.76	□□□□□ -0.21
NR1H3-225	ENST00000494018	PASK	Q96RG2	1323 aa		13.75	□□□□□ -0.21
NR1H3-225	ENST00000494018	HSP90AB2P	Q58FF8	381 aa		13.75	□□□□□ -0.21
NR1H3-225	ENST00000494018	CASP8AP2	Q9UKL3	1982 aa		13.74	□□□□□ -0.21
NR1H3-225	ENST00000494018	RPS6KA4	O75676	772 aa		13.74	□□□□□ -0.21
NR1H3-225	ENST00000494018	DEFB115	Q30KQ5	88 aa		13.74	□□□□□ -0.21
NR1H3-225	ENST00000494018	ERFE	Q4G0M1	354 aa		13.74	□□□□□ -0.21
NR1H3-225	ENST00000494018	WDR33	Q9C0J8	1336 aa	Known RBP	13.73	□□□□□ -0.21
NR1H3-225	ENST00000494018	EAPP	Q56P03	285 aa	Predicted RBP	13.73	□□□□□ -0.21
NR1H3-225	ENST00000494018	TERF2IP	Q9NYB0	399 aa		13.73	□□□□□ -0.21
NR1H3-225	ENST00000494018	SMG6	Q86US8	1419 aa	Known RBP	13.73	□□□□□ -0.21
NR1H3-225	ENST00000494018	AFDN	P55196	1824 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	POLRMT	O00411	1230 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	ADRA2B	P18089	450 aa		13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	MAP2K1	Q02750	393 aa	Predicted RBP	13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	MCOLN1	Q9GZU1	580 aa		13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	CLEC11A	Q9Y240	323 aa		13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	COL5A3	P25940	1745 aa	Predicted RBP	13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	DICER1	Q9UPY3	1922 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-225	ENST00000494018	ITGBL1	O95965	494 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-225	ENST00000494018	NKX1-1	Q15270	411 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-225	ENST00000494018	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-225	ENST00000494018	TTLL6	Q8N841	843 aa		13.71	□□□□□ -0.21
NR1H3-225	ENST00000494018	ABT1	Q9ULW3	272 aa	Known RBP	13.71	□□□□□ -0.21
NR1H3-225	ENST00000494018	ROCK2	O75116	1388 aa	Known RBP	13.71	□□□□□ -0.22
NR1H3-225	ENST00000494018	KDR	P35968	1356 aa		13.71	□□□□□ -0.22
NR1H3-225	ENST00000494018	RC3H1	Q5TC82	1133 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-225	ENST00000494018	C2CD5	Q86YS7	1000 aa		13.7	□□□□□ -0.22
NR1H3-225	ENST00000494018	CNTNAP4	Q9C0A0	1308 aa		13.69	□□□□□ -0.22
NR1H3-225	ENST00000494018	USP42	Q9H9J4	1324 aa	Known RBP	13.69	□□□□□ -0.22
NR1H3-225	ENST00000494018	C21orf2	O43822	256 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms