RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 SF3B2Q13435 895 aaKnown RBP19.4■□□□□ 0.7
ACTB-213ENST00000493945 DCTN1Q14203 1278 aa19.4■□□□□ 0.7
ACTB-213ENST00000493945 IL17REQ8NFR9 667 aa19.4■□□□□ 0.7
ACTB-213ENST00000493945 SMARCC1Q92922 1105 aaPredicted RBP19.4■□□□□ 0.7
ACTB-213ENST00000493945 BTBD11A6QL63 1104 aa19.39■□□□□ 0.69
ACTB-213ENST00000493945 E9PSI1 815 aa19.39■□□□□ 0.69
ACTB-213ENST00000493945 CFAP44Q96MT7 982 aa19.39■□□□□ 0.69
ACTB-213ENST00000493945 LGR6Q9HBX8 967 aa19.39■□□□□ 0.69
ACTB-213ENST00000493945 PRIM1P49642 420 aaKnown RBP19.38■□□□□ 0.69
ACTB-213ENST00000493945 ACSBG1Q96GR2 724 aa19.38■□□□□ 0.69
ACTB-213ENST00000493945 CHMP4AQ9BY43 222 aa19.38■□□□□ 0.69
ACTB-213ENST00000493945 BCL11BQ9C0K0 894 aaPredicted RBP19.38■□□□□ 0.69
ACTB-213ENST00000493945 TSPYL4Q9UJ04 414 aa19.38■□□□□ 0.69
ACTB-213ENST00000493945 LAS1LQ9Y4W2 734 aaKnown RBP19.38■□□□□ 0.69
ACTB-213ENST00000493945 BTAF1O14981 1849 aa19.37■□□□□ 0.69
ACTB-213ENST00000493945 NFATC2IPQ8NCF5 419 aa19.37■□□□□ 0.69
ACTB-213ENST00000493945 KDM3BQ7LBC6 1761 aa19.37■□□□□ 0.69
ACTB-213ENST00000493945 ZNF521Q96K83 1311 aa19.36■□□□□ 0.69
ACTB-213ENST00000493945 THUMPD2Q9BTF0 503 aaKnown RBP19.36■□□□□ 0.69
ACTB-213ENST00000493945 PAPPAQ13219 1627 aa19.36■□□□□ 0.69
ACTB-213ENST00000493945 FAM182BQ5T319 152 aa19.35■□□□□ 0.69
ACTB-213ENST00000493945 SENP3-EIF4A1A0A087X0R7 540 aa19.34■□□□□ 0.69
ACTB-213ENST00000493945 CCDC125Q86Z20 511 aa19.34■□□□□ 0.69
ACTB-213ENST00000493945 RGPD3A6NKT7 1758 aaPredicted RBP19.34■□□□□ 0.69
ACTB-213ENST00000493945 RGPD4Q7Z3J3 1758 aa19.34■□□□□ 0.69
ACTB-213ENST00000493945 TRIM37O94972 964 aa19.33■□□□□ 0.68
ACTB-213ENST00000493945 PIGBQ92521 554 aa19.33■□□□□ 0.68
ACTB-213ENST00000493945 SOS1Q07889 1333 aaPredicted RBP19.32■□□□□ 0.68
ACTB-213ENST00000493945 CHL1O00533 1208 aa19.32■□□□□ 0.68
ACTB-213ENST00000493945 ZNF790Q6PG37 636 aa19.32■□□□□ 0.68
ACTB-213ENST00000493945 FMNL2Q96PY5 1086 aa19.32■□□□□ 0.68
ACTB-213ENST00000493945 UBR2Q8IWV8 1755 aa19.32■□□□□ 0.68
ACTB-213ENST00000493945 TNS1Q9HBL0 1735 aaKnown RBP19.31■□□□□ 0.68
ACTB-213ENST00000493945 PALLDQ8WX93 1383 aa19.31■□□□□ 0.68
ACTB-213ENST00000493945 FANCIQ9NVI1 1328 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 KCNQ2O43526 872 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 ZNF853P0CG23 659 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 BAG6P46379 1132 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 MBIPQ9NS73 344 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 ZNF831Q5JPB2 1677 aa19.29■□□□□ 0.68
ACTB-213ENST00000493945 HOXB7P09629 217 aa19.28■□□□□ 0.68
ACTB-213ENST00000493945 SLFN5Q08AF3 891 aa19.28■□□□□ 0.68
ACTB-213ENST00000493945 VSIG10Q8N0Z9 540 aa19.28■□□□□ 0.68
ACTB-213ENST00000493945 TEX13AQ9BXU3 409 aaPredicted RBP19.28■□□□□ 0.68
ACTB-213ENST00000493945 APBA3O96018 575 aa19.27■□□□□ 0.68
ACTB-213ENST00000493945 CT47B1P0C2W7 299 aaPredicted RBP19.27■□□□□ 0.68
ACTB-213ENST00000493945 ATG3Q9NT62 314 aa19.27■□□□□ 0.68
ACTB-213ENST00000493945 LY75O60449 1722 aa19.27■□□□□ 0.68
ACTB-213ENST00000493945 LAMB4A4D0S4 1761 aa19.27■□□□□ 0.67
ACTB-213ENST00000493945 CICQ96RK0 1608 aaPredicted RBP19.26■□□□□ 0.67
ACTB-213ENST00000493945 RBM42Q9BTD8 480 aaKnown RBP19.26■□□□□ 0.67
ACTB-213ENST00000493945 HEG1Q9ULI3 1381 aa19.25■□□□□ 0.67
ACTB-213ENST00000493945 SNRPA1P09661 255 aaKnown RBP19.25■□□□□ 0.67
ACTB-213ENST00000493945 SLC39A6Q13433 755 aa19.25■□□□□ 0.67
ACTB-213ENST00000493945 SLC27A3Q5K4L6 730 aa19.25■□□□□ 0.67
ACTB-213ENST00000493945 ASAP1Q9ULH1 1129 aa19.25■□□□□ 0.67
ACTB-213ENST00000493945 KCPQ6ZWJ8 1503 aa19.25■□□□□ 0.67
ACTB-213ENST00000493945 PLSCR1O15162 318 aa19.24■□□□□ 0.67
ACTB-213ENST00000493945 PTCD1O75127 700 aaKnown RBP19.24■□□□□ 0.67
ACTB-213ENST00000493945 EIF4A1P60842 406 aaKnown RBP19.24■□□□□ 0.67
ACTB-213ENST00000493945 TSR2Q969E8 191 aaKnown RBP19.24■□□□□ 0.67
ACTB-213ENST00000493945 ZNF428Q96B54 188 aa19.24■□□□□ 0.67
ACTB-213ENST00000493945 MIS18AQ9NYP9 233 aa19.24■□□□□ 0.67
ACTB-213ENST00000493945 LOC102724428A0A0B4J2F2 783 aa19.23■□□□□ 0.67
ACTB-213ENST00000493945 STARD3NLO95772 234 aa19.23■□□□□ 0.67
ACTB-213ENST00000493945 SIK1P57059 783 aa19.23■□□□□ 0.67
ACTB-213ENST00000493945 CCNL1Q9UK58 526 aaPredicted RBP19.23■□□□□ 0.67
ACTB-213ENST00000493945 NPM2Q86SE8 214 aaKnown RBP19.22■□□□□ 0.67
ACTB-213ENST00000493945 ZNF496Q96IT1 587 aaPredicted RBP19.22■□□□□ 0.67
ACTB-213ENST00000493945 EP400Q96L91 3159 aa19.22■□□□□ 0.67
ACTB-213ENST00000493945 ATP6V1AP38606 617 aa19.21■□□□□ 0.67
ACTB-213ENST00000493945 TWISTNBQ3B726 338 aaPredicted RBP19.21■□□□□ 0.67
ACTB-213ENST00000493945 DUSP27Q5VZP5 1158 aa19.21■□□□□ 0.67
ACTB-213ENST00000493945 CDCA7LQ96GN5 454 aa19.21■□□□□ 0.67
ACTB-213ENST00000493945 CACNA1FO60840 1977 aa19.21■□□□□ 0.67
ACTB-213ENST00000493945 C5P01031 1676 aa19.2■□□□□ 0.66
ACTB-213ENST00000493945 CENPBP07199 599 aaPredicted RBP19.19■□□□□ 0.66
ACTB-213ENST00000493945 EXOSC9Q06265 439 aaKnown RBP19.19■□□□□ 0.66
ACTB-213ENST00000493945 TRMT2AQ8IZ69 625 aaKnown RBP19.19■□□□□ 0.66
ACTB-213ENST00000493945 STK31Q9BXU1 1019 aa19.19■□□□□ 0.66
ACTB-213ENST00000493945 ERBB4Q15303 1308 aa19.19■□□□□ 0.66
ACTB-213ENST00000493945 TJP1Q07157 1748 aa19.18■□□□□ 0.66
ACTB-213ENST00000493945 GIGYF1O75420 1035 aaPredicted RBP19.18■□□□□ 0.66
ACTB-213ENST00000493945 HDGFL1Q5TGJ6 251 aa19.18■□□□□ 0.66
ACTB-213ENST00000493945 CCDC30Q5VVM6 783 aa19.18■□□□□ 0.66
ACTB-213ENST00000493945 SPINK5Q9NQ38 1064 aaPredicted RBP19.18■□□□□ 0.66
ACTB-213ENST00000493945 COL5A3P25940 1745 aaPredicted RBP19.17■□□□□ 0.66
ACTB-213ENST00000493945 TAF1LQ8IZX4 1826 aa19.17■□□□□ 0.66
ACTB-213ENST00000493945 KCNQ3O43525 872 aa19.17■□□□□ 0.66
ACTB-213ENST00000493945 TXNRD1Q16881 649 aa19.16■□□□□ 0.66
ACTB-213ENST00000493945 PTF1AQ7RTS3 328 aa19.16■□□□□ 0.66
ACTB-213ENST00000493945 RREB1Q92766 1687 aa19.15■□□□□ 0.66
ACTB-213ENST00000493945 C8orf58Q8NAV2 365 aa19.14■□□□□ 0.65
ACTB-213ENST00000493945 CNTNAP4Q9C0A0 1308 aa19.14■□□□□ 0.65
ACTB-213ENST00000493945 ELL2O00472 640 aaPredicted RBP19.13■□□□□ 0.65
ACTB-213ENST00000493945 EIF2S2P20042 333 aaKnown RBP19.13■□□□□ 0.65
ACTB-213ENST00000493945 ALDH1L2Q3SY69 923 aa19.13■□□□□ 0.65
ACTB-213ENST00000493945 DNAJC10Q8IXB1 793 aa19.13■□□□□ 0.65
ACTB-213ENST00000493945 UPF1Q92900 1129 aaKnown RBP eCLIP19.13■□□□□ 0.65
ACTB-213ENST00000493945 AK7Q96M32 723 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms