RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 NEFMP07197 916 aa17.74■□□□□ 0.43
MSH6-208ENST00000493177 PIGBQ92521 554 aa17.74■□□□□ 0.43
MSH6-208ENST00000493177 MTFR1LQ9H019 292 aa17.74■□□□□ 0.43
MSH6-208ENST00000493177 FCHSD2O94868 740 aa17.73■□□□□ 0.43
MSH6-208ENST00000493177 PRKAR2BP31323 418 aa17.73■□□□□ 0.43
MSH6-208ENST00000493177 AKT1S1Q96B36 256 aa17.73■□□□□ 0.43
MSH6-208ENST00000493177 RSPH6AQ9H0K4 717 aa17.73■□□□□ 0.43
MSH6-208ENST00000493177 MAPK8IP3Q9UPT6 1336 aa17.72■□□□□ 0.43
MSH6-208ENST00000493177 DCAF5Q96JK2 942 aa17.72■□□□□ 0.43
MSH6-208ENST00000493177 KDRP35968 1356 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 DCAF8L1A6NGE4 600 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 CABP4P57796 275 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 RUNDC1Q96C34 613 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 YTHDC1Q96MU7 727 aaKnown RBP17.71■□□□□ 0.43
MSH6-208ENST00000493177 C4BP0C0L5 1744 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 SCN11AQ9UI33 1791 aa17.71■□□□□ 0.43
MSH6-208ENST00000493177 AK7Q96M32 723 aa17.7■□□□□ 0.42
MSH6-208ENST00000493177 PNPLA7Q6ZV29 1317 aa17.7■□□□□ 0.42
MSH6-208ENST00000493177 SENP3-EIF4A1A0A087X0R7 540 aa17.69■□□□□ 0.42
MSH6-208ENST00000493177 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
MSH6-208ENST00000493177 POLD1P28340 1107 aa17.69■□□□□ 0.42
MSH6-208ENST00000493177 ATP6V1AP38606 617 aa17.68■□□□□ 0.42
MSH6-208ENST00000493177 KLHL34Q8N239 644 aa17.68■□□□□ 0.42
MSH6-208ENST00000493177 SLC16A10Q8TF71 515 aa17.68■□□□□ 0.42
MSH6-208ENST00000493177 RBM42Q9BTD8 480 aaKnown RBP17.68■□□□□ 0.42
MSH6-208ENST00000493177 ASAP1Q9ULH1 1129 aa17.68■□□□□ 0.42
MSH6-208ENST00000493177 KDM6AO15550 1401 aaPredicted RBP17.67■□□□□ 0.42
MSH6-208ENST00000493177 LOC102724428A0A0B4J2F2 783 aa17.67■□□□□ 0.42
MSH6-208ENST00000493177 SIK1P57059 783 aa17.67■□□□□ 0.42
MSH6-208ENST00000493177 AKAP4Q5JQC9 854 aa17.67■□□□□ 0.42
MSH6-208ENST00000493177 PLEKHF1Q96S99 279 aa17.67■□□□□ 0.42
MSH6-208ENST00000493177 APAF1O14727 1248 aa17.66■□□□□ 0.42
MSH6-208ENST00000493177 PTGER2P43116 358 aa17.66■□□□□ 0.42
MSH6-208ENST00000493177 HNRNPUQ00839 825 aaKnown RBP eCLIP17.66■□□□□ 0.421e-6■□□□□ 11
MSH6-208ENST00000493177 FLAD1Q8NFF5 587 aa17.66■□□□□ 0.42
MSH6-208ENST00000493177 ATG3Q9NT62 314 aa17.66■□□□□ 0.42
MSH6-208ENST00000493177 UBR3Q6ZT12 1888 aa17.65■□□□□ 0.42
MSH6-208ENST00000493177 PHF14O94880 888 aa17.65■□□□□ 0.42
MSH6-208ENST00000493177 PHACTR3Q96KR7 559 aa17.65■□□□□ 0.42
MSH6-208ENST00000493177 ARXQ96QS3 562 aa17.65■□□□□ 0.42
MSH6-208ENST00000493177 SALL2Q9Y467 1007 aaPredicted RBP17.65■□□□□ 0.42
MSH6-208ENST00000493177 NEUROD2Q15784 382 aa17.64■□□□□ 0.41
MSH6-208ENST00000493177 RRP7AQ9Y3A4 280 aaKnown RBP17.64■□□□□ 0.41
MSH6-208ENST00000493177 COL23A1Q86Y22 540 aaPredicted RBP17.63■□□□□ 0.41
MSH6-208ENST00000493177 NFATC2IPQ8NCF5 419 aa17.63■□□□□ 0.41
MSH6-208ENST00000493177 MTHFSDQ2M296 383 aaKnown RBP17.62■□□□□ 0.41
MSH6-208ENST00000493177 GAS2L2Q8NHY3 880 aa17.62■□□□□ 0.41
MSH6-208ENST00000493177 FHDC1Q9C0D6 1143 aaPredicted RBP17.62■□□□□ 0.41
MSH6-208ENST00000493177 TMPOP42166 694 aaKnown RBP17.61■□□□□ 0.41
MSH6-208ENST00000493177 NFE2L2Q16236 605 aa17.61■□□□□ 0.41
MSH6-208ENST00000493177 MSL1Q68DK7 614 aa17.61■□□□□ 0.41
MSH6-208ENST00000493177 LINC00116Q8NCU8 138 aa17.61■□□□□ 0.41
MSH6-208ENST00000493177 ZNF831Q5JPB2 1677 aa17.61■□□□□ 0.41
MSH6-208ENST00000493177 COL5A3P25940 1745 aaPredicted RBP17.61■□□□□ 0.41
MSH6-208ENST00000493177 COL24A1Q17RW2 1714 aa17.61■□□□□ 0.41
MSH6-208ENST00000493177 GNPATO15228 680 aa17.6■□□□□ 0.41
MSH6-208ENST00000493177 PTCD1O75127 700 aaKnown RBP17.6■□□□□ 0.41
MSH6-208ENST00000493177 RIPK4P57078 832 aa17.6■□□□□ 0.41
MSH6-208ENST00000493177 ITPK1Q13572 414 aa17.6■□□□□ 0.41
MSH6-208ENST00000493177 RNMTO43148 476 aaKnown RBP17.59■□□□□ 0.41
MSH6-208ENST00000493177 SGIP1Q9BQI5 828 aa17.59■□□□□ 0.41
MSH6-208ENST00000493177 SLC52A2Q9HAB3 445 aa17.59■□□□□ 0.41
MSH6-208ENST00000493177 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.58■□□□□ 0.4
MSH6-208ENST00000493177 SSFA2P28290 1259 aa17.58■□□□□ 0.4
MSH6-208ENST00000493177 SYT17Q9BSW7 474 aa17.58■□□□□ 0.4
MSH6-208ENST00000493177 LGR6Q9HBX8 967 aa17.58■□□□□ 0.4
MSH6-208ENST00000493177 MAP3K5Q99683 1374 aa17.57■□□□□ 0.4
MSH6-208ENST00000493177 RTCBQ9Y3I0 505 aaKnown RBP17.57■□□□□ 0.4
MSH6-208ENST00000493177 GNAT3A8MTJ3 354 aa17.56■□□□□ 0.4
MSH6-208ENST00000493177 LMOD3Q0VAK6 560 aa17.56■□□□□ 0.4
MSH6-208ENST00000493177 TEFQ10587 303 aa17.56■□□□□ 0.4
MSH6-208ENST00000493177 RTF1Q92541 710 aaKnown RBP17.56■□□□□ 0.4
MSH6-208ENST00000493177 MRC1P22897 1456 aa17.56■□□□□ 0.4
MSH6-208ENST00000493177 TJP1Q07157 1748 aa17.55■□□□□ 0.4
MSH6-208ENST00000493177 SMIM5Q71RC9 77 aa17.55■□□□□ 0.4
MSH6-208ENST00000493177 TTC5Q8N0Z6 440 aa17.55■□□□□ 0.4
MSH6-208ENST00000493177 NGEFQ8N5V2 710 aa17.55■□□□□ 0.4
MSH6-208ENST00000493177 ADAMTS7Q9UKP4 1686 aa17.55■□□□□ 0.4
MSH6-208ENST00000493177 TRAPPC3LQ5T215 181 aa17.54■□□□□ 0.4
MSH6-208ENST00000493177 PELP1Q8IZL8 1130 aaKnown RBP17.54■□□□□ 0.4
MSH6-208ENST00000493177 SRCAPQ6ZRS2 3230 aa17.54■□□□□ 0.4
MSH6-208ENST00000493177 SLC39A6Q13433 755 aa17.53■□□□□ 0.4
MSH6-208ENST00000493177 SLC4A9Q96Q91 983 aa17.53■□□□□ 0.4
MSH6-208ENST00000493177 MYH14Q7Z406 1995 aaKnown RBP17.53■□□□□ 0.4
MSH6-208ENST00000493177 ZBED9Q6R2W3 1325 aa17.52■□□□□ 0.4
MSH6-208ENST00000493177 CNTNAP4Q9C0A0 1308 aa17.52■□□□□ 0.4
MSH6-208ENST00000493177 DCTN1Q14203 1278 aa17.52■□□□□ 0.4
MSH6-208ENST00000493177 AMIGO3Q86WK7 504 aa17.52■□□□□ 0.4
MSH6-208ENST00000493177 TRIM35Q9UPQ4 493 aa17.52■□□□□ 0.4
MSH6-208ENST00000493177 CICQ96RK0 1608 aaPredicted RBP17.51■□□□□ 0.39
MSH6-208ENST00000493177 SIPA1L3O60292 1781 aaPredicted RBP17.51■□□□□ 0.39
MSH6-208ENST00000493177 DLG5Q8TDM6 1919 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 HTATSF1O43719 755 aaKnown RBP17.51■□□□□ 0.39
MSH6-208ENST00000493177 C4AP0C0L4 1744 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 RFC4P35249 363 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 CCDC27Q2M243 656 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 NCBP3Q53F19 620 aaKnown RBP17.51■□□□□ 0.39
MSH6-208ENST00000493177 RC3H1Q5TC82 1133 aaKnown RBP17.51■□□□□ 0.39
MSH6-208ENST00000493177 MCM10Q7L590 875 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 WWC1Q8IX03 1113 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms