RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 DDX17Q92841 729 aaKnown RBP26.38■■□□□ 1.81
CCDC88B-208ENST00000492980 OVOS2A0A0G2JMS6 1433 aa26.37■■□□□ 1.81
CCDC88B-208ENST00000492980 EIF4A1P60842 406 aaKnown RBP26.36■■□□□ 1.81
CCDC88B-208ENST00000492980 FKBP5Q13451 457 aaPredicted RBP26.36■■□□□ 1.81
CCDC88B-208ENST00000492980 CADPS2Q86UW7 1296 aa26.36■■□□□ 1.81
CCDC88B-208ENST00000492980 MFAP1P55081 439 aaKnown RBP26.36■■□□□ 1.81
CCDC88B-208ENST00000492980 ERBB3P21860 1342 aa26.36■■□□□ 1.81
CCDC88B-208ENST00000492980 XIRP1Q702N8 1843 aaKnown RBP26.35■■□□□ 1.81
CCDC88B-208ENST00000492980 ZC3H6P61129 1189 aaKnown RBP26.35■■□□□ 1.81
CCDC88B-208ENST00000492980 HDGFL1Q5TGJ6 251 aa26.35■■□□□ 1.81
CCDC88B-208ENST00000492980 PXDNLA1KZ92 1463 aa26.35■■□□□ 1.81
CCDC88B-208ENST00000492980 MPRIPQ6WCQ1 1025 aa26.35■■□□□ 1.81
CCDC88B-208ENST00000492980 TEFQ10587 303 aa26.34■■□□□ 1.81
CCDC88B-208ENST00000492980 RNMTO43148 476 aaKnown RBP26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 C1orf141Q5JVX7 400 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 C22orf23Q9BZE7 217 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 NPHP3Q7Z494 1330 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 COL18A1P39060 1754 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 LMTK3Q96Q04 1460 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 HOXB7P09629 217 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 TNS3Q68CZ2 1445 aa26.33■■□□□ 1.81
CCDC88B-208ENST00000492980 CRYBG1Q9Y4K1 1723 aa26.32■■□□□ 1.8
CCDC88B-208ENST00000492980 BECN1Q14457 450 aa26.32■■□□□ 1.8
CCDC88B-208ENST00000492980 ADAMTS7Q9UKP4 1686 aa26.32■■□□□ 1.8
CCDC88B-208ENST00000492980 SIPA1L3O60292 1781 aaPredicted RBP26.31■■□□□ 1.8
CCDC88B-208ENST00000492980 BTBD11A6QL63 1104 aa26.31■■□□□ 1.8
CCDC88B-208ENST00000492980 KCNQ3O43525 872 aa26.31■■□□□ 1.8
CCDC88B-208ENST00000492980 PLEKHM2Q8IWE5 1019 aa26.3■■□□□ 1.8
CCDC88B-208ENST00000492980 RTL5Q5HYW3 569 aaPredicted RBP26.3■■□□□ 1.8
CCDC88B-208ENST00000492980 GNAI2P04899 355 aa26.29■■□□□ 1.8
CCDC88B-208ENST00000492980 HMMRO75330 724 aa26.29■■□□□ 1.8
CCDC88B-208ENST00000492980 PHAXQ9H814 394 aaKnown RBP26.28■■□□□ 1.8
CCDC88B-208ENST00000492980 GNAI3P08754 354 aa26.27■■□□□ 1.8
CCDC88B-208ENST00000492980 STRCQ7RTU9 1775 aa26.27■■□□□ 1.8
CCDC88B-208ENST00000492980 ABCC6O95255 1503 aa26.27■■□□□ 1.8
CCDC88B-208ENST00000492980 EIF2S2P20042 333 aaKnown RBP26.27■■□□□ 1.8
CCDC88B-208ENST00000492980 GSPT1P15170 499 aaKnown RBP26.26■■□□□ 1.79
CCDC88B-208ENST00000492980 C16orf71Q8IYS4 520 aaPredicted RBP26.26■■□□□ 1.79
CCDC88B-208ENST00000492980 CHMP4AQ9BY43 222 aa26.26■■□□□ 1.79
CCDC88B-208ENST00000492980 SPATA31A3Q5VYP0 1347 aa26.25■■□□□ 1.79
CCDC88B-208ENST00000492980 CABLES1Q8TDN4 633 aa26.24■■□□□ 1.79
CCDC88B-208ENST00000492980 CHPF2Q9P2E5 772 aa26.24■■□□□ 1.79
CCDC88B-208ENST00000492980 USP35Q9P2H5 1018 aa26.24■■□□□ 1.79
CCDC88B-208ENST00000492980 TBC1D2Q9BYX2 928 aa26.24■■□□□ 1.79
CCDC88B-208ENST00000492980 SMARCA5O60264 1052 aaPredicted RBP26.23■■□□□ 1.79
CCDC88B-208ENST00000492980 TBC1D9Q6ZT07 1266 aa26.23■■□□□ 1.79
CCDC88B-208ENST00000492980 NLRP2Q9NX02 1062 aa26.23■■□□□ 1.79
CCDC88B-208ENST00000492980 TTC22Q5TAA0 569 aa26.23■■□□□ 1.79
CCDC88B-208ENST00000492980 OTUD7AQ8TE49 926 aaPredicted RBP26.23■■□□□ 1.79
CCDC88B-208ENST00000492980 HEG1Q9ULI3 1381 aa26.22■■□□□ 1.79
CCDC88B-208ENST00000492980 RBM25P49756 843 aaKnown RBP26.22■■□□□ 1.79
CCDC88B-208ENST00000492980 RAPGEF4Q8WZA2 1011 aa26.22■■□□□ 1.79
CCDC88B-208ENST00000492980 APBB1O00213 710 aa26.21■■□□□ 1.79
CCDC88B-208ENST00000492980 SCN11AQ9UI33 1791 aa26.21■■□□□ 1.79
CCDC88B-208ENST00000492980 USP44Q9H0E7 712 aa26.21■■□□□ 1.79
CCDC88B-208ENST00000492980 MEGF6O75095 1541 aa26.21■■□□□ 1.79
CCDC88B-208ENST00000492980 CDC45O75419 566 aa26.2■■□□□ 1.79
CCDC88B-208ENST00000492980 ATP8B2P98198 1209 aa26.19■■□□□ 1.78
CCDC88B-208ENST00000492980 BRINP3Q76B58 766 aa26.19■■□□□ 1.78
CCDC88B-208ENST00000492980 CPDO75976 1380 aa26.19■■□□□ 1.78
CCDC88B-208ENST00000492980 GIGYF1O75420 1035 aaPredicted RBP26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 BCL11AQ9H165 835 aa26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 LRRFIP2Q9Y608 721 aaKnown RBP26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 TATP17735 454 aaPredicted RBP26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 NFKBIBQ15653 356 aa26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 CHRNA2Q15822 529 aa26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 KDM6AO15550 1401 aaPredicted RBP26.18■■□□□ 1.78
CCDC88B-208ENST00000492980 PNMA6EA0A0J9YXQ4 647 aa26.17■■□□□ 1.78
CCDC88B-208ENST00000492980 SRCIN1Q9C0H9 1055 aa26.17■■□□□ 1.78
CCDC88B-208ENST00000492980 UBTFL1P0CB47 393 aaPredicted RBP26.17■■□□□ 1.78
CCDC88B-208ENST00000492980 PLEKHG2Q9H7P9 1386 aa26.16■■□□□ 1.78
CCDC88B-208ENST00000492980 KDM4FA0A1W2PPD8 638 aa26.16■■□□□ 1.78
CCDC88B-208ENST00000492980 CSB-PGBD3P0DP91 1061 aa26.16■■□□□ 1.78
CCDC88B-208ENST00000492980 DBF4Q9UBU7 674 aaPredicted RBP26.16■■□□□ 1.78
CCDC88B-208ENST00000492980 ANXA1P04083 346 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 DNAAF4Q8WXU2 420 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 SPG7Q9UQ90 795 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 EXOC6BQ9Y2D4 811 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 ADCY9O60503 1353 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 PKD1L3Q7Z443 1732 aa26.15■■□□□ 1.78
CCDC88B-208ENST00000492980 PI4KAP2A4QPH2 592 aa26.14■■□□□ 1.78
CCDC88B-208ENST00000492980 PHKG2P15735 406 aa26.14■■□□□ 1.78
CCDC88B-208ENST00000492980 PI4KAP1Q8N8J0 262 aa26.14■■□□□ 1.78
CCDC88B-208ENST00000492980 BEND3Q5T5X7 828 aa26.14■■□□□ 1.77
CCDC88B-208ENST00000492980 IBTKQ9P2D0 1353 aaPredicted RBP26.13■■□□□ 1.77
CCDC88B-208ENST00000492980 PRAMEF22A3QJZ6 481 aa26.12■■□□□ 1.77
CCDC88B-208ENST00000492980 OSBPL3Q9H4L5 887 aa26.12■■□□□ 1.77
CCDC88B-208ENST00000492980 ANTXR1Q9H6X2 564 aa26.12■■□□□ 1.77
CCDC88B-208ENST00000492980 SLC52A2Q9HAB3 445 aa26.12■■□□□ 1.77
CCDC88B-208ENST00000492980 ZNF335Q9H4Z2 1342 aaPredicted RBP26.11■■□□□ 1.77
CCDC88B-208ENST00000492980 SDSP20132 328 aa26.11■■□□□ 1.77
CCDC88B-208ENST00000492980 PROSER3Q2NL68 480 aa26.11■■□□□ 1.77
CCDC88B-208ENST00000492980 LRRCC1Q9C099 1032 aa26.11■■□□□ 1.77
CCDC88B-208ENST00000492980 SLKQ9H2G2 1235 aaPredicted RBP26.11■■□□□ 1.77
CCDC88B-208ENST00000492980 C5P01031 1676 aa26.1■■□□□ 1.77
CCDC88B-208ENST00000492980 IFNL2Q8IZJ0 200 aa26.1■■□□□ 1.77
CCDC88B-208ENST00000492980 MRC1P22897 1456 aa26.1■■□□□ 1.77
CCDC88B-208ENST00000492980 DEKP35659 375 aaKnown RBP26.09■■□□□ 1.77
CCDC88B-208ENST00000492980 SALL3Q9BXA9 1300 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms