RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 TOGARAM1Q9Y4F4 1720 aa29.26■■■□□ 2.27
USF3-203ENST00000491165 HTATSF1O43719 755 aaKnown RBP29.25■■■□□ 2.27
USF3-203ENST00000491165 BACH2Q9BYV9 841 aa29.24■■■□□ 2.27
USF3-203ENST00000491165 RNMTO43148 476 aaKnown RBP29.24■■■□□ 2.27
USF3-203ENST00000491165 SLFN5Q08AF3 891 aa29.24■■■□□ 2.27
USF3-203ENST00000491165 ONECUT3O60422 494 aaPredicted RBP29.23■■■□□ 2.27
USF3-203ENST00000491165 A0A0G2JS52 829 aa29.23■■■□□ 2.27
USF3-203ENST00000491165 NBR1Q14596 966 aa29.23■■■□□ 2.27
USF3-203ENST00000491165 SIPA1L3O60292 1781 aaPredicted RBP29.23■■■□□ 2.27
USF3-203ENST00000491165 DUSP27Q5VZP5 1158 aa29.22■■■□□ 2.27
USF3-203ENST00000491165 MARCH10Q8NA82 808 aaPredicted RBP29.21■■■□□ 2.27
USF3-203ENST00000491165 TRMT2AQ8IZ69 625 aaKnown RBP29.21■■■□□ 2.27
USF3-203ENST00000491165 TSR2Q969E8 191 aaKnown RBP29.21■■■□□ 2.27
USF3-203ENST00000491165 NKX1-1Q15270 411 aaPredicted RBP29.2■■■□□ 2.27
USF3-203ENST00000491165 POTEAQ6S8J7 498 aa29.2■■■□□ 2.27
USF3-203ENST00000491165 LAS1LQ9Y4W2 734 aaKnown RBP29.2■■■□□ 2.27
USF3-203ENST00000491165 MIS18AQ9NYP9 233 aa29.2■■■□□ 2.26
USF3-203ENST00000491165 BRWD3Q6RI45 1802 aa29.2■■■□□ 2.26
USF3-203ENST00000491165 DCAF5Q96JK2 942 aa29.19■■■□□ 2.26
USF3-203ENST00000491165 ZNF853P0CG23 659 aa29.18■■■□□ 2.26
USF3-203ENST00000491165 NPM2Q86SE8 214 aaKnown RBP29.18■■■□□ 2.26
USF3-203ENST00000491165 SEPT12Q8IYM1 358 aa29.18■■■□□ 2.26
USF3-203ENST00000491165 IL16Q14005 1332 aa29.17■■■□□ 2.26
USF3-203ENST00000491165 E9PSI1 815 aa29.17■■■□□ 2.26
USF3-203ENST00000491165 C20orf194Q5TEA3 1177 aa29.17■■■□□ 2.26
USF3-203ENST00000491165 KAT6BQ8WYB5 2073 aa29.17■■■□□ 2.26
USF3-203ENST00000491165 DEKP35659 375 aaKnown RBP29.17■■■□□ 2.26
USF3-203ENST00000491165 RBM6P78332 1123 aaKnown RBP29.16■■■□□ 2.26
USF3-203ENST00000491165 CFAP44Q96MT7 982 aa29.16■■■□□ 2.26
USF3-203ENST00000491165 DOT1LQ8TEK3 1739 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 MBIPQ9NS73 344 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 MRC1P22897 1456 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 ITGB4P16144 1822 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 FAM182BQ5T319 152 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 IFT57Q9NWB7 429 aa29.15■■■□□ 2.26
USF3-203ENST00000491165 HSP90AB1P08238 724 aaKnown RBP29.14■■■□□ 2.26
USF3-203ENST00000491165 NFATC2IPQ8NCF5 419 aa29.14■■■□□ 2.25
USF3-203ENST00000491165 CHL1O00533 1208 aa29.12■■■□□ 2.25
USF3-203ENST00000491165 CALD1Q05682 793 aaKnown RBP29.12■■■□□ 2.25
USF3-203ENST00000491165 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.12■■■□□ 2.25
USF3-203ENST00000491165 SLC52A2Q9HAB3 445 aa29.12■■■□□ 2.25
USF3-203ENST00000491165 TEFQ10587 303 aa29.12■■■□□ 2.25
USF3-203ENST00000491165 KDM3BQ7LBC6 1761 aa29.12■■■□□ 2.25
USF3-203ENST00000491165 GNAI1P63096 354 aa29.11■■■□□ 2.25
USF3-203ENST00000491165 TAF7Q15545 349 aaPredicted RBP29.11■■■□□ 2.25
USF3-203ENST00000491165 KDM2BQ8NHM5 1336 aa29.1■■■□□ 2.25
USF3-203ENST00000491165 RXRBP28702 533 aa29.09■■■□□ 2.25
USF3-203ENST00000491165 KCNQ3O43525 872 aa29.08■■■□□ 2.25
USF3-203ENST00000491165 MYH16Q9H6N6 1097 aa29.08■■■□□ 2.25
USF3-203ENST00000491165 KRT24Q2M2I5 525 aa29.08■■■□□ 2.25
USF3-203ENST00000491165 CENPQQ7L2Z9 268 aaPredicted RBP29.08■■■□□ 2.25
USF3-203ENST00000491165 TSPYL4Q9UJ04 414 aa29.08■■■□□ 2.25
USF3-203ENST00000491165 RGS12O14924 1447 aa29.08■■■□□ 2.25
USF3-203ENST00000491165 RTL5Q5HYW3 569 aaPredicted RBP29.07■■■□□ 2.24
USF3-203ENST00000491165 ERVV-2B6SEH9 535 aa29.06■■■□□ 2.24
USF3-203ENST00000491165 CABP4P57796 275 aa29.06■■■□□ 2.24
USF3-203ENST00000491165 BTBD11A6QL63 1104 aa29.06■■■□□ 2.24
USF3-203ENST00000491165 ACSBG1Q96GR2 724 aa29.06■■■□□ 2.24
USF3-203ENST00000491165 EXOSC9Q06265 439 aaKnown RBP29.05■■■□□ 2.24
USF3-203ENST00000491165 SLC39A6Q13433 755 aa29.05■■■□□ 2.24
USF3-203ENST00000491165 SBF2Q86WG5 1849 aa29.03■■■□□ 2.24
USF3-203ENST00000491165 PRIM1P49642 420 aaKnown RBP29.03■■■□□ 2.24
USF3-203ENST00000491165 SKAP1Q86WV1 359 aa29.03■■■□□ 2.24
USF3-203ENST00000491165 TSPYL6Q8N831 410 aa29.03■■■□□ 2.24
USF3-203ENST00000491165 PAPPAQ13219 1627 aa29.02■■■□□ 2.24
USF3-203ENST00000491165 KCNQ2O43526 872 aa29.02■■■□□ 2.24
USF3-203ENST00000491165 PIGBQ92521 554 aa29.02■■■□□ 2.24
USF3-203ENST00000491165 C8orf58Q8NAV2 365 aa29.02■■■□□ 2.24
USF3-203ENST00000491165 SYTL4Q96C24 671 aaPredicted RBP29.02■■■□□ 2.24
USF3-203ENST00000491165 BCL9O00512 1426 aa29.01■■■□□ 2.23
USF3-203ENST00000491165 PTF1AQ7RTS3 328 aa29.01■■■□□ 2.23
USF3-203ENST00000491165 ELL2O00472 640 aaPredicted RBP29■■■□□ 2.23
USF3-203ENST00000491165 KRT27Q7Z3Y8 459 aa29■■■□□ 2.23
USF3-203ENST00000491165 TMOD3Q9NYL9 352 aa29■■■□□ 2.23
USF3-203ENST00000491165 ZNF790Q6PG37 636 aa28.99■■■□□ 2.23
USF3-203ENST00000491165 BABAM1Q9NWV8 329 aa28.99■■■□□ 2.23
USF3-203ENST00000491165 UBR2Q8IWV8 1755 aa28.98■■■□□ 2.23
USF3-203ENST00000491165 EIF4A1P60842 406 aaKnown RBP28.97■■■□□ 2.23
USF3-203ENST00000491165 DDRGK1Q96HY6 314 aa28.97■■■□□ 2.23
USF3-203ENST00000491165 ASAP1Q9ULH1 1129 aa28.96■■■□□ 2.23
USF3-203ENST00000491165 NHSQ6T4R5 1651 aa28.96■■■□□ 2.23
USF3-203ENST00000491165 KCPQ6ZWJ8 1503 aa28.93■■■□□ 2.22
USF3-203ENST00000491165 C5P01031 1676 aa28.93■■■□□ 2.22
USF3-203ENST00000491165 PRAMEF22A3QJZ6 481 aa28.93■■■□□ 2.22
USF3-203ENST00000491165 ZNF496Q96IT1 587 aaPredicted RBP28.93■■■□□ 2.22
USF3-203ENST00000491165 ATG3Q9NT62 314 aa28.93■■■□□ 2.22
USF3-203ENST00000491165 VAMP4O75379 141 aa28.92■■■□□ 2.22
USF3-203ENST00000491165 TWISTNBQ3B726 338 aaPredicted RBP28.92■■■□□ 2.22
USF3-203ENST00000491165 BTAF1O14981 1849 aa28.92■■■□□ 2.22
USF3-203ENST00000491165 HEG1Q9ULI3 1381 aa28.91■■■□□ 2.22
USF3-203ENST00000491165 TTC5Q8N0Z6 440 aa28.88■■■□□ 2.21
USF3-203ENST00000491165 PTCD1O75127 700 aaKnown RBP28.88■■■□□ 2.21
USF3-203ENST00000491165 BCAR3O75815 825 aa28.87■■■□□ 2.21
USF3-203ENST00000491165 FAM161AQ3B820 660 aa28.87■■■□□ 2.21
USF3-203ENST00000491165 BCL2L13Q9BXK5 485 aa28.87■■■□□ 2.21
USF3-203ENST00000491165 GIGYF1O75420 1035 aaPredicted RBP28.86■■■□□ 2.21
USF3-203ENST00000491165 FAM196AQ6ZSG2 479 aa28.86■■■□□ 2.21
USF3-203ENST00000491165 RARSP54136 660 aaKnown RBP28.85■■■□□ 2.21
USF3-203ENST00000491165 SLC4A9Q96Q91 983 aa28.84■■■□□ 2.21
USF3-203ENST00000491165 NECTIN2Q92692 538 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms