RNA–Protein interactions for RNA: ENST00000490283.1

SEC13-218, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-218ENST00000490283 FHDC1Q9C0D6 1143 aaPredicted RBP23.44■■□□□ 1.34
SEC13-218ENST00000490283 NUDCQ9Y266 331 aa23.43■■□□□ 1.34
SEC13-218ENST00000490283 COL3A1P02461 1466 aaPredicted RBP23.43■■□□□ 1.34
SEC13-218ENST00000490283 C4BP0C0L5 1744 aa23.42■■□□□ 1.34
SEC13-218ENST00000490283 TUBGCP6Q96RT7 1819 aa23.41■■□□□ 1.34
SEC13-218ENST00000490283 NFATC2IPQ8NCF5 419 aa23.41■■□□□ 1.34
SEC13-218ENST00000490283 LINC00116Q8NCU8 138 aa23.41■■□□□ 1.34
SEC13-218ENST00000490283 SYT17Q9BSW7 474 aa23.41■■□□□ 1.34
SEC13-218ENST00000490283 PHF14O94880 888 aa23.4■■□□□ 1.34
SEC13-218ENST00000490283 SSFA2P28290 1259 aa23.4■■□□□ 1.34
SEC13-218ENST00000490283 PPP2R1AP30153 589 aa23.4■■□□□ 1.34
SEC13-218ENST00000490283 KLHL34Q8N239 644 aa23.4■■□□□ 1.34
SEC13-218ENST00000490283 TAF1LQ8IZX4 1826 aa23.4■■□□□ 1.34
SEC13-218ENST00000490283 ITPK1Q13572 414 aa23.39■■□□□ 1.33
SEC13-218ENST00000490283 MTHFSDQ2M296 383 aaKnown RBP23.39■■□□□ 1.33
SEC13-218ENST00000490283 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.38■■□□□ 1.33
SEC13-218ENST00000490283 GNPATO15228 680 aa23.38■■□□□ 1.33
SEC13-218ENST00000490283 GAS2L2Q8NHY3 880 aa23.38■■□□□ 1.33
SEC13-218ENST00000490283 MSL1Q68DK7 614 aa23.37■■□□□ 1.33
SEC13-218ENST00000490283 SLC52A2Q9HAB3 445 aa23.37■■□□□ 1.33
SEC13-218ENST00000490283 MAP3K5Q99683 1374 aa23.37■■□□□ 1.33
SEC13-218ENST00000490283 RNMTO43148 476 aaKnown RBP23.36■■□□□ 1.33
SEC13-218ENST00000490283 PTCD1O75127 700 aaKnown RBP23.36■■□□□ 1.33
SEC13-218ENST00000490283 LGR6Q9HBX8 967 aa23.34■■□□□ 1.33
SEC13-218ENST00000490283 RTCBQ9Y3I0 505 aaKnown RBP23.34■■□□□ 1.33
SEC13-218ENST00000490283 U2AF1L5P0DN76 240 aaPredicted RBP23.33■■□□□ 1.33
SEC13-218ENST00000490283 U2AF1Q01081 240 aaKnown RBP eCLIP23.33■■□□□ 1.33
SEC13-218ENST00000490283 PRKAR2BP31323 418 aa23.32■■□□□ 1.32
SEC13-218ENST00000490283 RC3H1Q5TC82 1133 aaKnown RBP23.32■■□□□ 1.32
SEC13-218ENST00000490283 SLC4A9Q96Q91 983 aa23.32■■□□□ 1.32
SEC13-218ENST00000490283 SCN11AQ9UI33 1791 aa23.32■■□□□ 1.32
SEC13-218ENST00000490283 CNTNAP4Q9C0A0 1308 aa23.32■■□□□ 1.32
SEC13-218ENST00000490283 GNAT3A8MTJ3 354 aa23.31■■□□□ 1.32
SEC13-218ENST00000490283 ZNF831Q5JPB2 1677 aa23.31■■□□□ 1.32
SEC13-218ENST00000490283 MRC1P22897 1456 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 TEFQ10587 303 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 TRAPPC3LQ5T215 181 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 AMIGO3Q86WK7 504 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 COL24A1Q17RW2 1714 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 UBR3Q6ZT12 1888 aa23.3■■□□□ 1.32
SEC13-218ENST00000490283 ADRA2BP18089 450 aa23.29■■□□□ 1.32
SEC13-218ENST00000490283 SMIM5Q71RC9 77 aa23.29■■□□□ 1.32
SEC13-218ENST00000490283 RSPH6AQ9H0K4 717 aa23.29■■□□□ 1.32
SEC13-218ENST00000490283 RPS6KA4O75676 772 aa23.27■■□□□ 1.32
SEC13-218ENST00000490283 FCHSD2O94868 740 aa23.27■■□□□ 1.32
SEC13-218ENST00000490283 NEFMP07197 916 aa23.27■■□□□ 1.32
SEC13-218ENST00000490283 TTC5Q8N0Z6 440 aa23.27■■□□□ 1.32
SEC13-218ENST00000490283 SLC39A6Q13433 755 aa23.26■■□□□ 1.31
SEC13-218ENST00000490283 YY1P25490 414 aa23.25■■□□□ 1.31
SEC13-218ENST00000490283 RFC4P35249 363 aa23.25■■□□□ 1.31
SEC13-218ENST00000490283 CRKLP46109 303 aaKnown RBP23.25■■□□□ 1.31
SEC13-218ENST00000490283 GPR162Q16538 588 aa23.25■■□□□ 1.31
SEC13-218ENST00000490283 DDX10Q13206 875 aaKnown RBP23.24■■□□□ 1.31
SEC13-218ENST00000490283 RALBP1Q15311 655 aa23.24■■□□□ 1.31
SEC13-218ENST00000490283 PELP1Q8IZL8 1130 aaKnown RBP23.24■■□□□ 1.31
SEC13-218ENST00000490283 RTF1Q92541 710 aaKnown RBP23.24■■□□□ 1.31
SEC13-218ENST00000490283 PHACTR3Q96KR7 559 aa23.24■■□□□ 1.31
SEC13-218ENST00000490283 ADAMTS7Q9UKP4 1686 aa23.23■■□□□ 1.31
SEC13-218ENST00000490283 ARHGEF1Q92888 912 aaKnown RBP23.23■■□□□ 1.31
SEC13-218ENST00000490283 CD2APQ9Y5K6 639 aa23.23■■□□□ 1.31
SEC13-218ENST00000490283 COL5A3P25940 1745 aaPredicted RBP23.22■■□□□ 1.31
SEC13-218ENST00000490283 DNAJC10Q8IXB1 793 aa23.22■■□□□ 1.31
SEC13-218ENST00000490283 NLGN1Q8N2Q7 840 aa23.22■■□□□ 1.31
SEC13-218ENST00000490283 IL17REQ8NFR9 667 aa23.22■■□□□ 1.31
SEC13-218ENST00000490283 NLGN2Q8NFZ4 835 aa23.22■■□□□ 1.31
SEC13-218ENST00000490283 ZEB1P37275 1124 aaPredicted RBP23.21■■□□□ 1.31
SEC13-218ENST00000490283 VSIG10Q8N0Z9 540 aa23.21■■□□□ 1.31
SEC13-218ENST00000490283 CCDC87Q9NVE4 849 aa23.21■■□□□ 1.31
SEC13-218ENST00000490283 CICQ96RK0 1608 aaPredicted RBP23.19■■□□□ 1.3
SEC13-218ENST00000490283 MMP10P09238 476 aa23.19■■□□□ 1.3
SEC13-218ENST00000490283 PNNQ9H307 717 aaKnown RBP23.19■■□□□ 1.3
SEC13-218ENST00000490283 ZNF790Q6PG37 636 aa23.18■■□□□ 1.3
SEC13-218ENST00000490283 TJP1Q07157 1748 aa23.18■■□□□ 1.3
SEC13-218ENST00000490283 KCPQ6ZWJ8 1503 aa23.18■■□□□ 1.3
SEC13-218ENST00000490283 CEMIPQ8WUJ3 1361 aa23.17■■□□□ 1.3
SEC13-218ENST00000490283 INTS5Q6P9B9 1019 aaKnown RBP23.17■■□□□ 1.3
SEC13-218ENST00000490283 BTBD11A6QL63 1104 aa23.16■■□□□ 1.3
SEC13-218ENST00000490283 STARD3NLO95772 234 aa23.16■■□□□ 1.3
SEC13-218ENST00000490283 CYP19A1P11511 503 aaPredicted RBP23.16■■□□□ 1.3
SEC13-218ENST00000490283 GYS1P13807 737 aa23.16■■□□□ 1.3
SEC13-218ENST00000490283 TEX13AQ9BXU3 409 aaPredicted RBP23.16■■□□□ 1.3
SEC13-218ENST00000490283 VIRMAQ69YN4 1812 aaKnown RBP23.16■■□□□ 1.3
SEC13-218ENST00000490283 HTATSF1O43719 755 aaKnown RBP23.15■■□□□ 1.3
SEC13-218ENST00000490283 FMNL2Q96PY5 1086 aa23.15■■□□□ 1.3
SEC13-218ENST00000490283 MAPK8IP3Q9UPT6 1336 aa23.14■■□□□ 1.3
SEC13-218ENST00000490283 ZPR1O75312 459 aa23.14■■□□□ 1.29
SEC13-218ENST00000490283 ZNF496Q96IT1 587 aaPredicted RBP23.14■■□□□ 1.29
SEC13-218ENST00000490283 PARP3Q9Y6F1 533 aa23.14■■□□□ 1.29
SEC13-218ENST00000490283 MYBBP1AQ9BQG0 1328 aaKnown RBP23.13■■□□□ 1.29
SEC13-218ENST00000490283 USP42Q9H9J4 1324 aaKnown RBP23.13■■□□□ 1.29
SEC13-218ENST00000490283 GRIN3BO60391 1043 aa23.13■■□□□ 1.29
SEC13-218ENST00000490283 MCM10Q7L590 875 aa23.13■■□□□ 1.29
SEC13-218ENST00000490283 HEG1Q9ULI3 1381 aa23.13■■□□□ 1.29
SEC13-218ENST00000490283 MYH14Q7Z406 1995 aaKnown RBP23.12■■□□□ 1.29
SEC13-218ENST00000490283 SOS1Q07889 1333 aaPredicted RBP23.12■■□□□ 1.29
SEC13-218ENST00000490283 SRP68Q9UHB9 627 aaKnown RBP23.11■■□□□ 1.29
SEC13-218ENST00000490283 ZBTB1Q9Y2K1 713 aa23.11■■□□□ 1.29
SEC13-218ENST00000490283 UBR2Q8IWV8 1755 aa23.1■■□□□ 1.29
SEC13-218ENST00000490283 CANXP27824 592 aaKnown RBP23.1■■□□□ 1.29
SEC13-218ENST00000490283 NPM2Q86SE8 214 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms