RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZNF784Q8NCA9 323 aaPredicted RBP15.02■□□□□ -0
TRIM40-208ENST00000489892 ZCRB1Q8TBF4 217 aaKnown RBP15.02■□□□□ -0
TRIM40-208ENST00000489892 TAF7Q15545 349 aaPredicted RBP15.01□□□□□ -0.01
TRIM40-208ENST00000489892 DCAF5Q96JK2 942 aa15.01□□□□□ -0.01
TRIM40-208ENST00000489892 THUMPD2Q9BTF0 503 aaKnown RBP15.01□□□□□ -0.01
TRIM40-208ENST00000489892 MBIPQ9NS73 344 aa15.01□□□□□ -0.01
TRIM40-208ENST00000489892 SPATA31A5Q5VU36 1347 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 SPATA31A7Q8IWB4 1347 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 PHKG2P15735 406 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 RRP1P56182 461 aaKnown RBP15□□□□□ -0.01
TRIM40-208ENST00000489892 DCTN1Q14203 1278 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 TSR2Q969E8 191 aaKnown RBP15□□□□□ -0.01
TRIM40-208ENST00000489892 TSPYL4Q9UJ04 414 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 THSD7AQ9UPZ6 1657 aa15□□□□□ -0.01
TRIM40-208ENST00000489892 RNMTO43148 476 aaKnown RBP14.99□□□□□ -0.01
TRIM40-208ENST00000489892 MS4A1P11836 297 aa14.99□□□□□ -0.01
TRIM40-208ENST00000489892 EXOSC9Q06265 439 aaKnown RBP14.99□□□□□ -0.01
TRIM40-208ENST00000489892 ALDH1L2Q3SY69 923 aa14.99□□□□□ -0.01
TRIM40-208ENST00000489892 IL17REQ8NFR9 667 aa14.99□□□□□ -0.01
TRIM40-208ENST00000489892 ADAMTS7Q9UKP4 1686 aa14.99□□□□□ -0.01
TRIM40-208ENST00000489892 SPATA31A1Q5TZJ5 1347 aa14.98□□□□□ -0.01
TRIM40-208ENST00000489892 BARGINQ6ZT62 677 aa14.98□□□□□ -0.01
TRIM40-208ENST00000489892 DISP2A7MBM2 1401 aa14.98□□□□□ -0.01
TRIM40-208ENST00000489892 TNS1Q9HBL0 1735 aaKnown RBP14.97□□□□□ -0.01
TRIM40-208ENST00000489892 KIF16BQ96L93 1317 aa14.97□□□□□ -0.01
TRIM40-208ENST00000489892 FAM182BQ5T319 152 aa14.97□□□□□ -0.01
TRIM40-208ENST00000489892 WNK3Q9BYP7 1800 aa14.96□□□□□ -0.01
TRIM40-208ENST00000489892 CANXP27824 592 aaKnown RBP14.96□□□□□ -0.01
TRIM40-208ENST00000489892 RARSP54136 660 aaKnown RBP14.96□□□□□ -0.01
TRIM40-208ENST00000489892 TWISTNBQ3B726 338 aaPredicted RBP14.96□□□□□ -0.01
TRIM40-208ENST00000489892 MPRIPQ6WCQ1 1025 aa14.96□□□□□ -0.01
TRIM40-208ENST00000489892 USP35Q9P2H5 1018 aa14.96□□□□□ -0.01
TRIM40-208ENST00000489892 SCN11AQ9UI33 1791 aa14.96□□□□□ -0.02
TRIM40-208ENST00000489892 MRC1P22897 1456 aa14.95□□□□□ -0.02
TRIM40-208ENST00000489892 TNS2Q63HR2 1409 aa14.95□□□□□ -0.02
TRIM40-208ENST00000489892 ERVV-2B6SEH9 535 aa14.95□□□□□ -0.02
TRIM40-208ENST00000489892 EXOC5O00471 708 aa14.95□□□□□ -0.02
TRIM40-208ENST00000489892 IPO8O15397 1037 aaKnown RBP14.95□□□□□ -0.02
TRIM40-208ENST00000489892 HOXB7P09629 217 aa14.95□□□□□ -0.02
TRIM40-208ENST00000489892 EN1Q05925 392 aaPredicted RBP14.95□□□□□ -0.02
TRIM40-208ENST00000489892 NKX1-1Q15270 411 aaPredicted RBP14.95□□□□□ -0.02
TRIM40-208ENST00000489892 BTBD11A6QL63 1104 aa14.94□□□□□ -0.02
TRIM40-208ENST00000489892 CYP27B1O15528 508 aa14.94□□□□□ -0.02
TRIM40-208ENST00000489892 BRPF1P55201 1214 aaPredicted RBP14.94□□□□□ -0.02
TRIM40-208ENST00000489892 R3HDM1Q15032 1099 aaKnown RBP14.94□□□□□ -0.02
TRIM40-208ENST00000489892 SLC52A2Q9HAB3 445 aa14.94□□□□□ -0.02
TRIM40-208ENST00000489892 SMC4Q9NTJ3 1288 aa14.94□□□□□ -0.02
TRIM40-208ENST00000489892 KDM6AO15550 1401 aaPredicted RBP14.93□□□□□ -0.02
TRIM40-208ENST00000489892 VIRMAQ69YN4 1812 aaKnown RBP14.93□□□□□ -0.02
TRIM40-208ENST00000489892 CEP350Q5VT06 3117 aa14.93□□□□□ -0.02
TRIM40-208ENST00000489892 VAMP4O75379 141 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 CABP4P57796 275 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 PDE3AQ14432 1141 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 DDB1Q16531 1140 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 FAM196AQ6ZSG2 479 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 LGR6Q9HBX8 967 aa14.92□□□□□ -0.02
TRIM40-208ENST00000489892 SIPA1L3O60292 1781 aaPredicted RBP14.91□□□□□ -0.02
TRIM40-208ENST00000489892 KDM3BQ7LBC6 1761 aa14.91□□□□□ -0.02
TRIM40-208ENST00000489892 DDX54Q8TDD1 881 aaKnown RBP14.91□□□□□ -0.02
TRIM40-208ENST00000489892 TRIM37O94972 964 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 AAMPQ13685 434 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 ZKSCAN2Q63HK3 967 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 TTC5Q8N0Z6 440 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 C8orf58Q8NAV2 365 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 STK31Q9BXU1 1019 aa14.9□□□□□ -0.02
TRIM40-208ENST00000489892 RBM19Q9Y4C8 960 aaKnown RBP14.9□□□□□ -0.02
TRIM40-208ENST00000489892 SHANK3Q9BYB0 1731 aa14.89□□□□□ -0.03
TRIM40-208ENST00000489892 CCDC30Q5VVM6 783 aa14.89□□□□□ -0.03
TRIM40-208ENST00000489892 SSH1Q8WYL5 1049 aa14.89□□□□□ -0.03
TRIM40-208ENST00000489892 ARHGAP45Q92619 1136 aa14.89□□□□□ -0.03
TRIM40-208ENST00000489892 CACNA1FO60840 1977 aa14.88□□□□□ -0.03
TRIM40-208ENST00000489892 BCAR3O75815 825 aa14.88□□□□□ -0.03
TRIM40-208ENST00000489892 EZH2Q15910 746 aaKnown RBP14.88□□□□□ -0.03
TRIM40-208ENST00000489892 CHMP4BQ9H444 224 aaKnown RBP14.88□□□□□ -0.03
TRIM40-208ENST00000489892 APBA3O96018 575 aa14.87□□□□□ -0.03
TRIM40-208ENST00000489892 EIF4A1P60842 406 aaKnown RBP14.87□□□□□ -0.03
TRIM40-208ENST00000489892 ZNF790Q6PG37 636 aa14.87□□□□□ -0.03
TRIM40-208ENST00000489892 FTSJ3Q8IY81 847 aaKnown RBP14.87□□□□□ -0.03
TRIM40-208ENST00000489892 FRAT1Q92837 279 aaPredicted RBP14.87□□□□□ -0.03
TRIM40-208ENST00000489892 TMOD3Q9NYL9 352 aa14.87□□□□□ -0.03
TRIM40-208ENST00000489892 MIS18AQ9NYP9 233 aa14.87□□□□□ -0.03
TRIM40-208ENST00000489892 ELL2O00472 640 aaPredicted RBP14.86□□□□□ -0.03
TRIM40-208ENST00000489892 TSPYL6Q8N831 410 aa14.86□□□□□ -0.03
TRIM40-208ENST00000489892 NFATC2IPQ8NCF5 419 aa14.86□□□□□ -0.03
TRIM40-208ENST00000489892 API5Q9BZZ5 524 aaKnown RBP14.86□□□□□ -0.03
TRIM40-208ENST00000489892 PTPRCP08575 1304 aa14.86□□□□□ -0.03
TRIM40-208ENST00000489892 RREB1Q92766 1687 aa14.85□□□□□ -0.03
TRIM40-208ENST00000489892 ATF7IPQ6VMQ6 1270 aa14.85□□□□□ -0.03
TRIM40-208ENST00000489892 FMNL2Q96PY5 1086 aa14.85□□□□□ -0.03
TRIM40-208ENST00000489892 BCL2L13Q9BXK5 485 aa14.85□□□□□ -0.03
TRIM40-208ENST00000489892 UTRNP46939 3433 aa14.85□□□□□ -0.03
TRIM40-208ENST00000489892 NUP188Q5SRE5 1749 aa14.84□□□□□ -0.03
TRIM40-208ENST00000489892 HDGFL1Q5TGJ6 251 aa14.84□□□□□ -0.03
TRIM40-208ENST00000489892 MRPL50Q8N5N7 158 aaKnown RBP14.84□□□□□ -0.03
TRIM40-208ENST00000489892 CAMKK2Q96RR4 588 aa14.84□□□□□ -0.03
TRIM40-208ENST00000489892 HEG1Q9ULI3 1381 aa14.84□□□□□ -0.03
TRIM40-208ENST00000489892 DCAF8L1A6NGE4 600 aa14.83□□□□□ -0.04
TRIM40-208ENST00000489892 PLIN1O60240 522 aa14.83□□□□□ -0.04
TRIM40-208ENST00000489892 SNRPA1P09661 255 aaKnown RBP14.83□□□□□ -0.04
TRIM40-208ENST00000489892 IRX6P78412 446 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms