RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 IL17REQ8NFR9 667 aa23.04■■□□□ 1.28
MDC1-206ENST00000489540 PLEKHF1Q96S99 279 aa23.03■■□□□ 1.28
MDC1-206ENST00000489540 LY75O60449 1722 aa23.03■■□□□ 1.28
MDC1-206ENST00000489540 RTF1Q92541 710 aaKnown RBP23.02■■□□□ 1.28
MDC1-206ENST00000489540 RBM42Q9BTD8 480 aaKnown RBP23.02■■□□□ 1.28
MDC1-206ENST00000489540 SPON1Q9HCB6 807 aa23.02■■□□□ 1.28
MDC1-206ENST00000489540 HTATSF1O43719 755 aaKnown RBP23.01■■□□□ 1.27
MDC1-206ENST00000489540 TEFQ10587 303 aa23.01■■□□□ 1.27
MDC1-206ENST00000489540 PAPPAQ13219 1627 aa23.01■■□□□ 1.27
MDC1-206ENST00000489540 PDGFDQ9GZP0 370 aaPredicted RBP23■■□□□ 1.27
MDC1-206ENST00000489540 WDR43Q15061 677 aaKnown RBP eCLIP22.99■■□□□ 1.27
MDC1-206ENST00000489540 MAPK8IP3Q9UPT6 1336 aa22.99■■□□□ 1.27
MDC1-206ENST00000489540 ANP32CO43423 234 aa22.99■■□□□ 1.27
MDC1-206ENST00000489540 PTCD1O75127 700 aaKnown RBP22.99■■□□□ 1.27
MDC1-206ENST00000489540 ITPK1Q13572 414 aa22.99■■□□□ 1.27
MDC1-206ENST00000489540 AK7Q96M32 723 aa22.99■■□□□ 1.27
MDC1-206ENST00000489540 LINC00116Q8NCU8 138 aa22.98■■□□□ 1.27
MDC1-206ENST00000489540 FLAD1Q8NFF5 587 aa22.98■■□□□ 1.27
MDC1-206ENST00000489540 SLC16A10Q8TF71 515 aa22.98■■□□□ 1.27
MDC1-206ENST00000489540 SLC4A9Q96Q91 983 aa22.98■■□□□ 1.27
MDC1-206ENST00000489540 CEMIPQ8WUJ3 1361 aa22.97■■□□□ 1.27
MDC1-206ENST00000489540 PNPLA7Q6ZV29 1317 aa22.97■■□□□ 1.27
MDC1-206ENST00000489540 MRC1P22897 1456 aa22.97■■□□□ 1.27
MDC1-206ENST00000489540 ZBTB7AO95365 584 aa22.97■■□□□ 1.27
MDC1-206ENST00000489540 MTFR1LQ9H019 292 aa22.97■■□□□ 1.27
MDC1-206ENST00000489540 NFE2L2Q16236 605 aa22.96■■□□□ 1.27
MDC1-206ENST00000489540 SLC39A6Q13433 755 aa22.95■■□□□ 1.26
MDC1-206ENST00000489540 SCN11AQ9UI33 1791 aa22.94■■□□□ 1.26
MDC1-206ENST00000489540 RC3H1Q5TC82 1133 aaKnown RBP22.94■■□□□ 1.26
MDC1-206ENST00000489540 TTC5Q8N0Z6 440 aa22.94■■□□□ 1.26
MDC1-206ENST00000489540 MCM10Q7L590 875 aa22.93■■□□□ 1.26
MDC1-206ENST00000489540 COL23A1Q86Y22 540 aaPredicted RBP22.93■■□□□ 1.26
MDC1-206ENST00000489540 ATF5Q9Y2D1 282 aaPredicted RBP22.93■■□□□ 1.26
MDC1-206ENST00000489540 ADAMTS7Q9UKP4 1686 aa22.93■■□□□ 1.26
MDC1-206ENST00000489540 MSH5O43196 834 aa22.92■■□□□ 1.26
MDC1-206ENST00000489540 ADAMTS8Q9UP79 889 aa22.92■■□□□ 1.26
MDC1-206ENST00000489540 BTBD11A6QL63 1104 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 ZNF790Q6PG37 636 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 VSIG10Q8N0Z9 540 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 LRP5O75197 1615 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 GNPATO15228 680 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 SSFA2P28290 1259 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 DCTN1Q14203 1278 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 RUNDC1Q96C34 613 aa22.91■■□□□ 1.26
MDC1-206ENST00000489540 PPP1R1BQ9UD71 204 aaPredicted RBP22.9■■□□□ 1.26
MDC1-206ENST00000489540 CNTNAP4Q9C0A0 1308 aa22.89■■□□□ 1.26
MDC1-206ENST00000489540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.89■■□□□ 1.25
MDC1-206ENST00000489540 PTGER2P43116 358 aa22.89■■□□□ 1.25
MDC1-206ENST00000489540 TAF7Q15545 349 aaPredicted RBP22.89■■□□□ 1.25
MDC1-206ENST00000489540 RTCBQ9Y3I0 505 aaKnown RBP22.89■■□□□ 1.25
MDC1-206ENST00000489540 CASZ1Q86V15 1759 aa22.89■■□□□ 1.25
MDC1-206ENST00000489540 C5P01031 1676 aa22.88■■□□□ 1.25
MDC1-206ENST00000489540 SRCAPQ6ZRS2 3230 aa22.88■■□□□ 1.25
MDC1-206ENST00000489540 RIPK4P57078 832 aa22.88■■□□□ 1.25
MDC1-206ENST00000489540 PHF14O94880 888 aa22.87■■□□□ 1.25
MDC1-206ENST00000489540 TMPOP42166 694 aaKnown RBP22.87■■□□□ 1.25
MDC1-206ENST00000489540 DNAJC10Q8IXB1 793 aa22.87■■□□□ 1.25
MDC1-206ENST00000489540 CCDC146Q8IYE0 955 aa22.87■■□□□ 1.25
MDC1-206ENST00000489540 C4BP0C0L5 1744 aa22.87■■□□□ 1.25
MDC1-206ENST00000489540 RPS6KA4O75676 772 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 CRKLP46109 303 aaKnown RBP22.86■■□□□ 1.25
MDC1-206ENST00000489540 LMOD3Q0VAK6 560 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 TRAPPC3LQ5T215 181 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 AMIGO3Q86WK7 504 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 ZNF496Q96IT1 587 aaPredicted RBP22.86■■□□□ 1.25
MDC1-206ENST00000489540 FMNL2Q96PY5 1086 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 SGIP1Q9BQI5 828 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 ZNF831Q5JPB2 1677 aa22.86■■□□□ 1.25
MDC1-206ENST00000489540 ADRA2BP18089 450 aa22.85■■□□□ 1.25
MDC1-206ENST00000489540 PNISRQ8TF01 805 aaKnown RBP22.85■■□□□ 1.25
MDC1-206ENST00000489540 TEX13AQ9BXU3 409 aaPredicted RBP22.85■■□□□ 1.25
MDC1-206ENST00000489540 CYP19A1P11511 503 aaPredicted RBP22.84■■□□□ 1.25
MDC1-206ENST00000489540 POLD1P28340 1107 aa22.84■■□□□ 1.25
MDC1-206ENST00000489540 TAF1LQ8IZX4 1826 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 STARD3NLO95772 234 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 CCDC184Q52MB2 194 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 INTS5Q6P9B9 1019 aaKnown RBP22.83■■□□□ 1.25
MDC1-206ENST00000489540 SMIM5Q71RC9 77 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 KCPQ6ZWJ8 1503 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 QSER1Q2KHR3 1735 aa22.83■■□□□ 1.25
MDC1-206ENST00000489540 KCNQ3O43525 872 aa22.82■■□□□ 1.24
MDC1-206ENST00000489540 HEG1Q9ULI3 1381 aa22.82■■□□□ 1.24
MDC1-206ENST00000489540 ARXQ96QS3 562 aa22.82■■□□□ 1.24
MDC1-206ENST00000489540 MRS2Q9HD23 443 aa22.82■■□□□ 1.24
MDC1-206ENST00000489540 CCDC87Q9NVE4 849 aa22.82■■□□□ 1.24
MDC1-206ENST00000489540 ARHGEF1Q92888 912 aaKnown RBP22.81■■□□□ 1.24
MDC1-206ENST00000489540 THUMPD2Q9BTF0 503 aaKnown RBP22.81■■□□□ 1.24
MDC1-206ENST00000489540 RRP7AQ9Y3A4 280 aaKnown RBP22.81■■□□□ 1.24
MDC1-206ENST00000489540 NEUROD2Q15784 382 aa22.8■■□□□ 1.24
MDC1-206ENST00000489540 RFC4P35249 363 aa22.79■■□□□ 1.24
MDC1-206ENST00000489540 MIS18AQ9NYP9 233 aa22.79■■□□□ 1.24
MDC1-206ENST00000489540 SNRPA1P09661 255 aaKnown RBP22.78■■□□□ 1.24
MDC1-206ENST00000489540 MSL1Q68DK7 614 aa22.78■■□□□ 1.24
MDC1-206ENST00000489540 BABAM1Q9NWV8 329 aa22.77■■□□□ 1.24
MDC1-206ENST00000489540 VIRMAQ69YN4 1812 aaKnown RBP22.75■■□□□ 1.23
MDC1-206ENST00000489540 TUBGCP6Q96RT7 1819 aa22.75■■□□□ 1.23
MDC1-206ENST00000489540 APAF1O14727 1248 aa22.75■■□□□ 1.23
MDC1-206ENST00000489540 NLGN1Q8N2Q7 840 aa22.75■■□□□ 1.23
MDC1-206ENST00000489540 TRIM35Q9UPQ4 493 aa22.75■■□□□ 1.23
MDC1-206ENST00000489540 CICQ96RK0 1608 aaPredicted RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms