RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 DIP2CQ9Y2E4 1556 aa7.74□□□□□ -1.17
ATG4A-208ENST00000489247 CNTLNQ9NXG0 1405 aa7.73□□□□□ -1.17
ATG4A-208ENST00000489247 NUTM2BA6NNL0 878 aaPredicted RBP7.73□□□□□ -1.17
ATG4A-208ENST00000489247 NUTM2EB1AL46 878 aaPredicted RBP7.73□□□□□ -1.17
ATG4A-208ENST00000489247 MMP16P51512 607 aa7.73□□□□□ -1.17
ATG4A-208ENST00000489247 DDX10Q13206 875 aaKnown RBP7.73□□□□□ -1.17
ATG4A-208ENST00000489247 PLA2G2CQ5R387 149 aa7.73□□□□□ -1.17
ATG4A-208ENST00000489247 NUTM2DQ5VT03 806 aaPredicted RBP7.73□□□□□ -1.17
ATG4A-208ENST00000489247 NUTM2AQ8IVF1 878 aaPredicted RBP7.73□□□□□ -1.17
ATG4A-208ENST00000489247 DACH1Q9UI36 760 aa7.73□□□□□ -1.17
ATG4A-208ENST00000489247 ABCA6Q8N139 1617 aa7.73□□□□□ -1.17
ATG4A-208ENST00000489247 RICTORQ6R327 1708 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 KIF3BO15066 747 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 GDF9O60383 454 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 DXOO77932 396 aaKnown RBP7.72□□□□□ -1.17
ATG4A-208ENST00000489247 ZNF697Q5TEC3 545 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 PRPF38BQ5VTL8 546 aaKnown RBP7.72□□□□□ -1.17
ATG4A-208ENST00000489247 GOPCQ9HD26 462 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 FCF1Q9Y324 198 aaKnown RBP7.72□□□□□ -1.17
ATG4A-208ENST00000489247 ABCC3O15438 1527 aa7.72□□□□□ -1.17
ATG4A-208ENST00000489247 TRPM1Q7Z4N2 1603 aa7.71□□□□□ -1.17
ATG4A-208ENST00000489247 NOS1P29475 1434 aa7.71□□□□□ -1.17
ATG4A-208ENST00000489247 MYOM2P54296 1465 aa7.71□□□□□ -1.18
ATG4A-208ENST00000489247 JUNDP17535 347 aa7.71□□□□□ -1.18
ATG4A-208ENST00000489247 PCMTD1Q96MG8 357 aaPredicted RBP7.71□□□□□ -1.18
ATG4A-208ENST00000489247 SPHKAPQ2M3C7 1700 aa7.71□□□□□ -1.18
ATG4A-208ENST00000489247 AGLP35573 1532 aa7.71□□□□□ -1.18
ATG4A-208ENST00000489247 KIF7Q2M1P5 1343 aa7.71□□□□□ -1.18
ATG4A-208ENST00000489247 ROCK2O75116 1388 aaKnown RBP7.71□□□□□ -1.18
ATG4A-208ENST00000489247 CLTCL1P53675 1640 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 NPATQ14207 1427 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 PPRC1Q5VV67 1664 aaKnown RBP7.7□□□□□ -1.18
ATG4A-208ENST00000489247 NRXN1Q9ULB1 1477 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 CRIPAKQ8N1N5 446 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 ANKLE1Q8NAG6 615 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 DCAF11Q8TEB1 546 aa7.7□□□□□ -1.18
ATG4A-208ENST00000489247 ADGRB3O60242 1522 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 SPDYE5A6NIY4 337 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 PER1O15534 1290 aaPredicted RBP7.69□□□□□ -1.18
ATG4A-208ENST00000489247 ANP32CO43423 234 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 FAM69CQ0P6D2 419 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 TSC1Q92574 1164 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 HIRIP3Q9BW71 556 aaPredicted RBP7.69□□□□□ -1.18
ATG4A-208ENST00000489247 CARD11Q9BXL7 1154 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 MADDQ8WXG6 1647 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 POLR1AO95602 1720 aaPredicted RBP7.69□□□□□ -1.18
ATG4A-208ENST00000489247 YEATS2Q9ULM3 1422 aa7.69□□□□□ -1.18
ATG4A-208ENST00000489247 ZC3H13Q5T200 1668 aaKnown RBP7.68□□□□□ -1.18
ATG4A-208ENST00000489247 RAPGEF3O95398 923 aa7.68□□□□□ -1.18
ATG4A-208ENST00000489247 CEP152O94986 1710 aa7.68□□□□□ -1.18
ATG4A-208ENST00000489247 TERTO14746 1132 aaKnown RBP7.67□□□□□ -1.18
ATG4A-208ENST00000489247 PPP2R2DQ66LE6 453 aa7.67□□□□□ -1.18
ATG4A-208ENST00000489247 LIAT1Q6ZQX7 453 aa7.67□□□□□ -1.18
ATG4A-208ENST00000489247 CCDC24Q8N4L8 307 aa7.67□□□□□ -1.18
ATG4A-208ENST00000489247 KIAA1210Q9ULL0 1709 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 RFC5P40937 340 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 CTDSPL2Q05D32 466 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 PTCRAQ6ISU1 281 aaPredicted RBP7.66□□□□□ -1.18
ATG4A-208ENST00000489247 TESK2Q96S53 571 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 NUDT12Q9BQG2 462 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 RPGRIP1LQ68CZ1 1315 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 COL17A1Q9UMD9 1497 aaPredicted RBP7.66□□□□□ -1.18
ATG4A-208ENST00000489247 PIK3C2BO00750 1634 aa7.66□□□□□ -1.18
ATG4A-208ENST00000489247 ZFYVE9O95405 1425 aa7.65□□□□□ -1.18
ATG4A-208ENST00000489247 CAMSAP1Q5T5Y3 1602 aa7.65□□□□□ -1.18
ATG4A-208ENST00000489247 DESI1Q6ICB0 168 aa7.65□□□□□ -1.18
ATG4A-208ENST00000489247 LYPD8Q6UX82 237 aa7.65□□□□□ -1.18
ATG4A-208ENST00000489247 KTN1Q86UP2 1357 aaKnown RBP7.65□□□□□ -1.18
ATG4A-208ENST00000489247 SCAF11Q99590 1463 aaKnown RBP7.65□□□□□ -1.18
ATG4A-208ENST00000489247 ARHGEF40Q8TER5 1519 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 ST20-MTHFSA0A0A6YYL1 179 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 AP1G2O75843 785 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 PTPRNQ16849 979 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 NBPF1Q3BBV0 1214 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 RGL3Q3MIN7 710 aa7.64□□□□□ -1.19
ATG4A-208ENST00000489247 ZNF326Q5BKZ1 582 aaKnown RBP7.64□□□□□ -1.19
ATG4A-208ENST00000489247 PRKRIP1Q9H875 184 aaPredicted RBP7.64□□□□□ -1.19
ATG4A-208ENST00000489247 SBNO2Q9Y2G9 1366 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 WASHC2CQ9Y4E1 1318 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 AXIN1O15169 862 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 CCNYL3P0C7X3 344 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 LRRN4Q8WUT4 740 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 MAP10Q9P2G4 905 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 IFT172Q9UG01 1749 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 IQGAP1P46940 1657 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 SYNMO15061 1565 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 UGGT1Q9NYU2 1555 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 SETBP1Q9Y6X0 1596 aa7.63□□□□□ -1.19
ATG4A-208ENST00000489247 PIK3C2GO75747 1445 aa7.62□□□□□ -1.19
ATG4A-208ENST00000489247 ZSCAN1Q8NBB4 408 aa7.62□□□□□ -1.19
ATG4A-208ENST00000489247 HELBQ8NG08 1087 aaPredicted RBP7.62□□□□□ -1.19
ATG4A-208ENST00000489247 EVA1BQ9NVM1 165 aa7.62□□□□□ -1.19
ATG4A-208ENST00000489247 SLC52A1Q9NWF4 448 aa7.62□□□□□ -1.19
ATG4A-208ENST00000489247 F12P00748 615 aaPredicted RBP7.61□□□□□ -1.19
ATG4A-208ENST00000489247 AVPP01185 164 aa7.61□□□□□ -1.19
ATG4A-208ENST00000489247 LORP23490 312 aaPredicted RBP7.61□□□□□ -1.19
ATG4A-208ENST00000489247 GGT6Q6P531 493 aa7.61□□□□□ -1.19
ATG4A-208ENST00000489247 ZMYND15Q9H091 742 aa7.61□□□□□ -1.19
ATG4A-208ENST00000489247 KIF13AQ9H1H9 1805 aa7.61□□□□□ -1.19
ATG4A-208ENST00000489247 EIF3AQ14152 1382 aaKnown RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms