RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 KDM6AO15550 1401 aaPredicted RBP20.58■□□□□ 0.89
SYNE1-227ENST00000489156 EP400Q96L91 3159 aa20.57■□□□□ 0.88
SYNE1-227ENST00000489156 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.56■□□□□ 0.88
SYNE1-227ENST00000489156 TOGARAM1Q9Y4F4 1720 aa20.56■□□□□ 0.88
SYNE1-227ENST00000489156 ADAMTS7Q9UKP4 1686 aa20.56■□□□□ 0.88
SYNE1-227ENST00000489156 FANCIQ9NVI1 1328 aa20.56■□□□□ 0.88
SYNE1-227ENST00000489156 DOT1LQ8TEK3 1739 aa20.55■□□□□ 0.88
SYNE1-227ENST00000489156 ITGB4P16144 1822 aa20.55■□□□□ 0.88
SYNE1-227ENST00000489156 PPP4R2Q9NY27 417 aa20.55■□□□□ 0.88
SYNE1-227ENST00000489156 CEMIPQ8WUJ3 1361 aa20.54■□□□□ 0.88
SYNE1-227ENST00000489156 ACSBG1Q96GR2 724 aa20.54■□□□□ 0.88
SYNE1-227ENST00000489156 SBF2Q86WG5 1849 aa20.54■□□□□ 0.88
SYNE1-227ENST00000489156 GNAI1P63096 354 aa20.54■□□□□ 0.88
SYNE1-227ENST00000489156 IFT57Q9NWB7 429 aa20.54■□□□□ 0.88
SYNE1-227ENST00000489156 ERVV-2B6SEH9 535 aa20.52■□□□□ 0.87
SYNE1-227ENST00000489156 ZNF853P0CG23 659 aa20.52■□□□□ 0.87
SYNE1-227ENST00000489156 PRIM1P49642 420 aaKnown RBP20.52■□□□□ 0.87
SYNE1-227ENST00000489156 TEFQ10587 303 aa20.52■□□□□ 0.87
SYNE1-227ENST00000489156 NFATC2IPQ8NCF5 419 aa20.52■□□□□ 0.87
SYNE1-227ENST00000489156 SYTL4Q96C24 671 aaPredicted RBP20.52■□□□□ 0.87
SYNE1-227ENST00000489156 CFAP44Q96MT7 982 aa20.52■□□□□ 0.87
SYNE1-227ENST00000489156 CABP4P57796 275 aa20.51■□□□□ 0.87
SYNE1-227ENST00000489156 FAM196AQ6ZSG2 479 aa20.51■□□□□ 0.87
SYNE1-227ENST00000489156 SLC52A2Q9HAB3 445 aa20.51■□□□□ 0.87
SYNE1-227ENST00000489156 SIPA1L3O60292 1781 aaPredicted RBP20.51■□□□□ 0.87
SYNE1-227ENST00000489156 KCNQ2O43526 872 aa20.5■□□□□ 0.87
SYNE1-227ENST00000489156 TSR2Q969E8 191 aaKnown RBP20.5■□□□□ 0.87
SYNE1-227ENST00000489156 RARSP54136 660 aaKnown RBP20.5■□□□□ 0.87
SYNE1-227ENST00000489156 BCL9O00512 1426 aa20.49■□□□□ 0.87
SYNE1-227ENST00000489156 LAS1LQ9Y4W2 734 aaKnown RBP20.49■□□□□ 0.87
SYNE1-227ENST00000489156 EXOSC9Q06265 439 aaKnown RBP20.48■□□□□ 0.87
SYNE1-227ENST00000489156 ZNF428Q96B54 188 aa20.48■□□□□ 0.87
SYNE1-227ENST00000489156 TMOD3Q9NYL9 352 aa20.48■□□□□ 0.87
SYNE1-227ENST00000489156 PLIN1O60240 522 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 TAF7Q15545 349 aaPredicted RBP20.47■□□□□ 0.87
SYNE1-227ENST00000489156 PTF1AQ7RTS3 328 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 MIS18AQ9NYP9 233 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 MRC1P22897 1456 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 BCAR3O75815 825 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 PIGBQ92521 554 aa20.47■□□□□ 0.87
SYNE1-227ENST00000489156 NHSQ6T4R5 1651 aa20.46■□□□□ 0.87
SYNE1-227ENST00000489156 BTBD11A6QL63 1104 aa20.45■□□□□ 0.86
SYNE1-227ENST00000489156 TRIM37O94972 964 aa20.45■□□□□ 0.86
SYNE1-227ENST00000489156 MBIPQ9NS73 344 aa20.44■□□□□ 0.86
SYNE1-227ENST00000489156 CHL1O00533 1208 aa20.43■□□□□ 0.86
SYNE1-227ENST00000489156 SLC39A6Q13433 755 aa20.43■□□□□ 0.86
SYNE1-227ENST00000489156 BTAF1O14981 1849 aa20.43■□□□□ 0.86
SYNE1-227ENST00000489156 PDE3AQ14432 1141 aa20.43■□□□□ 0.86
SYNE1-227ENST00000489156 PELP1Q8IZL8 1130 aaKnown RBP20.42■□□□□ 0.86
SYNE1-227ENST00000489156 TSPYL4Q9UJ04 414 aa20.42■□□□□ 0.86
SYNE1-227ENST00000489156 KCNQ3O43525 872 aa20.41■□□□□ 0.86
SYNE1-227ENST00000489156 ALDH1L2Q3SY69 923 aa20.41■□□□□ 0.86
SYNE1-227ENST00000489156 BCL11BQ9C0K0 894 aaPredicted RBP20.41■□□□□ 0.86
SYNE1-227ENST00000489156 ASAP1Q9ULH1 1129 aa20.41■□□□□ 0.86
SYNE1-227ENST00000489156 KDM3BQ7LBC6 1761 aa20.41■□□□□ 0.86
SYNE1-227ENST00000489156 EXOC6Q8TAG9 804 aa20.41■□□□□ 0.86
SYNE1-227ENST00000489156 ZNF790Q6PG37 636 aa20.4■□□□□ 0.86
SYNE1-227ENST00000489156 ATG3Q9NT62 314 aa20.4■□□□□ 0.86
SYNE1-227ENST00000489156 BABAM1Q9NWV8 329 aa20.39■□□□□ 0.86
SYNE1-227ENST00000489156 BRPF1P55201 1214 aaPredicted RBP20.39■□□□□ 0.85
SYNE1-227ENST00000489156 PAPPAQ13219 1627 aa20.38■□□□□ 0.85
SYNE1-227ENST00000489156 C20orf194Q5TEA3 1177 aa20.38■□□□□ 0.85
SYNE1-227ENST00000489156 VAMP4O75379 141 aa20.37■□□□□ 0.85
SYNE1-227ENST00000489156 CANXP27824 592 aaKnown RBP20.37■□□□□ 0.85
SYNE1-227ENST00000489156 ILDR2Q71H61 639 aa20.37■□□□□ 0.85
SYNE1-227ENST00000489156 TTC5Q8N0Z6 440 aa20.37■□□□□ 0.85
SYNE1-227ENST00000489156 CRBNQ96SW2 442 aa20.37■□□□□ 0.85
SYNE1-227ENST00000489156 SMC4Q9NTJ3 1288 aa20.37■□□□□ 0.85
SYNE1-227ENST00000489156 PTCD1O75127 700 aaKnown RBP20.36■□□□□ 0.85
SYNE1-227ENST00000489156 MS4A1P11836 297 aa20.36■□□□□ 0.85
SYNE1-227ENST00000489156 SSH1Q8WYL5 1049 aa20.36■□□□□ 0.85
SYNE1-227ENST00000489156 CCDC136Q96JN2 1154 aa20.36■□□□□ 0.85
SYNE1-227ENST00000489156 UBR2Q8IWV8 1755 aa20.36■□□□□ 0.85
SYNE1-227ENST00000489156 TWISTNBQ3B726 338 aaPredicted RBP20.35■□□□□ 0.85
SYNE1-227ENST00000489156 B4GALNT3Q6L9W6 998 aa20.35■□□□□ 0.85
SYNE1-227ENST00000489156 TNS1Q9HBL0 1735 aaKnown RBP20.35■□□□□ 0.85
SYNE1-227ENST00000489156 EIF4A1P60842 406 aaKnown RBP20.35■□□□□ 0.85
SYNE1-227ENST00000489156 KRT24Q2M2I5 525 aa20.35■□□□□ 0.85
SYNE1-227ENST00000489156 FRAT1Q92837 279 aaPredicted RBP20.35■□□□□ 0.85
SYNE1-227ENST00000489156 ZNF496Q96IT1 587 aaPredicted RBP20.35■□□□□ 0.85
SYNE1-227ENST00000489156 KIF16BQ96L93 1317 aa20.34■□□□□ 0.85
SYNE1-227ENST00000489156 RBM42Q9BTD8 480 aaKnown RBP20.34■□□□□ 0.85
SYNE1-227ENST00000489156 BCL2L13Q9BXK5 485 aa20.34■□□□□ 0.85
SYNE1-227ENST00000489156 PALLDQ8WX93 1383 aa20.34■□□□□ 0.85
SYNE1-227ENST00000489156 APBA3O96018 575 aa20.33■□□□□ 0.85
SYNE1-227ENST00000489156 ZKSCAN2Q63HK3 967 aa20.33■□□□□ 0.85
SYNE1-227ENST00000489156 TSPYL6Q8N831 410 aa20.33■□□□□ 0.85
SYNE1-227ENST00000489156 C8orf58Q8NAV2 365 aa20.33■□□□□ 0.85
SYNE1-227ENST00000489156 SMARCC1Q92922 1105 aaPredicted RBP20.33■□□□□ 0.85
SYNE1-227ENST00000489156 IPO8O15397 1037 aaKnown RBP20.33■□□□□ 0.84
SYNE1-227ENST00000489156 KCPQ6ZWJ8 1503 aa20.32■□□□□ 0.84
SYNE1-227ENST00000489156 ELL2O00472 640 aaPredicted RBP20.32■□□□□ 0.84
SYNE1-227ENST00000489156 AAMPQ13685 434 aa20.32■□□□□ 0.84
SYNE1-227ENST00000489156 FMNL2Q96PY5 1086 aa20.32■□□□□ 0.84
SYNE1-227ENST00000489156 LY75O60449 1722 aa20.31■□□□□ 0.84
SYNE1-227ENST00000489156 SLC4A9Q96Q91 983 aa20.3■□□□□ 0.84
SYNE1-227ENST00000489156 SOS1Q07889 1333 aaPredicted RBP20.3■□□□□ 0.84
SYNE1-227ENST00000489156 LOC102724428A0A0B4J2F2 783 aa20.29■□□□□ 0.84
SYNE1-227ENST00000489156 PRAMEF22A3QJZ6 481 aa20.29■□□□□ 0.84
SYNE1-227ENST00000489156 SIK1P57059 783 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms