RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 C5P01031 1676 aa15.97■□□□□ 0.15
HLA-DOB-209ENST00000488325 USP54Q70EL1 1684 aa15.96■□□□□ 0.15
HLA-DOB-209ENST00000488325 NUDCQ9Y266 331 aa15.96■□□□□ 0.15
HLA-DOB-209ENST00000488325 SMG6Q86US8 1419 aaKnown RBP15.94■□□□□ 0.14
HLA-DOB-209ENST00000488325 ARHGAP27Q6ZUM4 889 aa15.94■□□□□ 0.14
HLA-DOB-209ENST00000488325 ADAMTS8Q9UP79 889 aa15.94■□□□□ 0.14
HLA-DOB-209ENST00000488325 BCS1LQ9Y276 419 aa15.94■□□□□ 0.14
HLA-DOB-209ENST00000488325 PXDNLA1KZ92 1463 aa15.93■□□□□ 0.14
HLA-DOB-209ENST00000488325 AMIGO3Q86WK7 504 aa15.93■□□□□ 0.14
HLA-DOB-209ENST00000488325 POLKQ9UBT6 870 aa15.93■□□□□ 0.14
HLA-DOB-209ENST00000488325 PLEKHG2Q9H7P9 1386 aa15.92■□□□□ 0.14
HLA-DOB-209ENST00000488325 SMC1BQ8NDV3 1235 aa15.92■□□□□ 0.14
HLA-DOB-209ENST00000488325 KCPQ6ZWJ8 1503 aa15.92■□□□□ 0.14
HLA-DOB-209ENST00000488325 C10orf71Q711Q0 1435 aa15.92■□□□□ 0.14
HLA-DOB-209ENST00000488325 LTN1O94822 1766 aa15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 DIAPH1O60610 1272 aaKnown RBP15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 C9orf131Q5VYM1 1079 aa15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 SMIM5Q71RC9 77 aa15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 KDM2BQ8NHM5 1336 aa15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 TOGARAM1Q9Y4F4 1720 aa15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 COL3A1P02461 1466 aaPredicted RBP15.91■□□□□ 0.14
HLA-DOB-209ENST00000488325 TAF1LQ8IZX4 1826 aa15.9■□□□□ 0.14
HLA-DOB-209ENST00000488325 PHF14O94880 888 aa15.9■□□□□ 0.14
HLA-DOB-209ENST00000488325 HMGB2P26583 209 aaKnown RBP15.9■□□□□ 0.14
HLA-DOB-209ENST00000488325 AK7Q96M32 723 aa15.9■□□□□ 0.14
HLA-DOB-209ENST00000488325 RRAGCQ9HB90 399 aa15.9■□□□□ 0.14
HLA-DOB-209ENST00000488325 KIAA1551Q9HCM1 1747 aa15.89■□□□□ 0.13
HLA-DOB-209ENST00000488325 NGEFQ8N5V2 710 aa15.89■□□□□ 0.13
HLA-DOB-209ENST00000488325 PNNQ9H307 717 aaKnown RBP15.89■□□□□ 0.13
HLA-DOB-209ENST00000488325 MAP2P11137 1827 aaKnown RBP15.89■□□□□ 0.13
HLA-DOB-209ENST00000488325 C4BP0C0L5 1744 aa15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 PPM1GO15355 546 aaPredicted RBP15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 FAM161AQ3B820 660 aa15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 ZCRB1Q8TBF4 217 aaKnown RBP15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 EMILIN1Q9Y6C2 1016 aa15.88■□□□□ 0.13
HLA-DOB-209ENST00000488325 PALLDQ8WX93 1383 aa15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 N4BP2Q86UW6 1770 aaPredicted RBP15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 A0A0G2JLW4 131 aa15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 U2AF1L5P0DN76 240 aaPredicted RBP15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 U2AF1Q01081 240 aaKnown RBP eCLIP15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 PKD1L3Q7Z443 1732 aa15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 KIF24Q5T7B8 1368 aa15.87■□□□□ 0.13
HLA-DOB-209ENST00000488325 UBR3Q6ZT12 1888 aa15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 TNRC6CQ9HCJ0 1690 aaKnown RBP15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 U2SURPO15042 1029 aaKnown RBP15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 FCHSD2O94868 740 aa15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 TGFB2P61812 414 aa15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 RRS1Q15050 365 aaKnown RBP15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 LTV1Q96GA3 475 aaPredicted RBP15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 KIF13BQ9NQT8 1826 aa15.86■□□□□ 0.13
HLA-DOB-209ENST00000488325 RUNDC1Q96C34 613 aa15.85■□□□□ 0.13
HLA-DOB-209ENST00000488325 FAM208AQ9UK61 1670 aaKnown RBP15.85■□□□□ 0.13
HLA-DOB-209ENST00000488325 MMP10P09238 476 aa15.84■□□□□ 0.13
HLA-DOB-209ENST00000488325 FBLN1P23142 703 aa15.84■□□□□ 0.13
HLA-DOB-209ENST00000488325 CCDC146Q8IYE0 955 aa15.84■□□□□ 0.13
HLA-DOB-209ENST00000488325 FLT4P35916 1363 aa15.84■□□□□ 0.13
HLA-DOB-209ENST00000488325 MEGF6O75095 1541 aa15.84■□□□□ 0.13
HLA-DOB-209ENST00000488325 DPEP1P16444 411 aa15.83■□□□□ 0.12
HLA-DOB-209ENST00000488325 SSFA2P28290 1259 aa15.83■□□□□ 0.12
HLA-DOB-209ENST00000488325 RNF181Q9P0P0 153 aa15.83■□□□□ 0.12
HLA-DOB-209ENST00000488325 FOXN1O15353 648 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 NEFMP07197 916 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 IL13P35225 146 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 AMPHP49418 695 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 IP6K1Q92551 441 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 PRDM10Q9NQV6 1147 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 MAP3K19Q56UN5 1328 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 RTL1A6NKG5 1358 aa15.82■□□□□ 0.12
HLA-DOB-209ENST00000488325 APAF1O14727 1248 aa15.81■□□□□ 0.12
HLA-DOB-209ENST00000488325 NCBP3Q53F19 620 aaKnown RBP15.81■□□□□ 0.12
HLA-DOB-209ENST00000488325 MAPK8IP3Q9UPT6 1336 aa15.8■□□□□ 0.12
HLA-DOB-209ENST00000488325 SALL2Q9Y467 1007 aaPredicted RBP15.8■□□□□ 0.12
HLA-DOB-209ENST00000488325 BRCA1P38398 1863 aaKnown RBP15.8■□□□□ 0.12
HLA-DOB-209ENST00000488325 MPRIPQ6WCQ1 1025 aa15.79■□□□□ 0.12
HLA-DOB-209ENST00000488325 ARFGEF1Q9Y6D6 1849 aa15.78■□□□□ 0.12
HLA-DOB-209ENST00000488325 EIF4A2Q14240 407 aaKnown RBP15.78■□□□□ 0.12
HLA-DOB-209ENST00000488325 SMARCC1Q92922 1105 aaPredicted RBP15.78■□□□□ 0.12
HLA-DOB-209ENST00000488325 LINC00116Q8NCU8 138 aa15.77■□□□□ 0.12
HLA-DOB-209ENST00000488325 DCAF5Q96JK2 942 aa15.77■□□□□ 0.12
HLA-DOB-209ENST00000488325 MKRN1Q9UHC7 482 aaKnown RBP15.77■□□□□ 0.12
HLA-DOB-209ENST00000488325 GNPATO15228 680 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 VEGFAP15692 232 aaPredicted RBP15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 KCNA3P22001 575 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 HOXC9P31274 260 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 HSP90AB2PQ58FF8 381 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 PLEKHF1Q96S99 279 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 RSPH6AQ9H0K4 717 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 CCDC87Q9NVE4 849 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 RGPD2P0DJD1 1756 aa15.76■□□□□ 0.11
HLA-DOB-209ENST00000488325 MLLT1Q03111 559 aaPredicted RBP15.75■□□□□ 0.11
HLA-DOB-209ENST00000488325 CCDC27Q2M243 656 aa15.75■□□□□ 0.11
HLA-DOB-209ENST00000488325 ABHD8Q96I13 439 aa15.75■□□□□ 0.11
HLA-DOB-209ENST00000488325 ZNF521Q96K83 1311 aa15.74■□□□□ 0.11
HLA-DOB-209ENST00000488325 PRKAR2BP31323 418 aa15.74■□□□□ 0.11
HLA-DOB-209ENST00000488325 CTCFP49711 727 aaPredicted RBP15.74■□□□□ 0.11
HLA-DOB-209ENST00000488325 GOLGA2Q08379 1002 aa15.74■□□□□ 0.11
HLA-DOB-209ENST00000488325 PIM2Q9P1W9 311 aa15.74■□□□□ 0.11
HLA-DOB-209ENST00000488325 DALRD3Q5D0E6 543 aaKnown RBP15.73■□□□□ 0.11
HLA-DOB-209ENST00000488325 NLGN1Q8N2Q7 840 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms