RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 LINC00116Q8NCU8 138 aa27.43■■□□□ 1.98
HDAC4-209ENST00000487617 RBM42Q9BTD8 480 aaKnown RBP27.43■■□□□ 1.98
HDAC4-209ENST00000487617 NUDCQ9Y266 331 aa27.43■■□□□ 1.98
HDAC4-209ENST00000487617 TUBGCP6Q96RT7 1819 aa27.43■■□□□ 1.98
HDAC4-209ENST00000487617 FLAD1Q8NFF5 587 aa27.42■■□□□ 1.98
HDAC4-209ENST00000487617 ARXQ96QS3 562 aa27.41■■□□□ 1.98
HDAC4-209ENST00000487617 POLD1P28340 1107 aa27.4■■□□□ 1.98
HDAC4-209ENST00000487617 LGR6Q9HBX8 967 aa27.4■■□□□ 1.98
HDAC4-209ENST00000487617 C4BP0C0L5 1744 aa27.4■■□□□ 1.98
HDAC4-209ENST00000487617 TAF1LQ8IZX4 1826 aa27.39■■□□□ 1.98
HDAC4-209ENST00000487617 RNMTO43148 476 aaKnown RBP27.39■■□□□ 1.98
HDAC4-209ENST00000487617 FHDC1Q9C0D6 1143 aaPredicted RBP27.38■■□□□ 1.97
HDAC4-209ENST00000487617 PHF14O94880 888 aa27.37■■□□□ 1.97
HDAC4-209ENST00000487617 SLC4A9Q96Q91 983 aa27.37■■□□□ 1.97
HDAC4-209ENST00000487617 SLC52A2Q9HAB3 445 aa27.37■■□□□ 1.97
HDAC4-209ENST00000487617 PTCD1O75127 700 aaKnown RBP27.36■■□□□ 1.97
HDAC4-209ENST00000487617 U2AF1L5P0DN76 240 aaPredicted RBP27.36■■□□□ 1.97
HDAC4-209ENST00000487617 U2AF1Q01081 240 aaKnown RBP eCLIP27.36■■□□□ 1.97
HDAC4-209ENST00000487617 DDX10Q13206 875 aaKnown RBP27.36■■□□□ 1.97
HDAC4-209ENST00000487617 AMIGO3Q86WK7 504 aa27.36■■□□□ 1.97
HDAC4-209ENST00000487617 GAS2L2Q8NHY3 880 aa27.36■■□□□ 1.97
HDAC4-209ENST00000487617 GNPATO15228 680 aa27.35■■□□□ 1.97
HDAC4-209ENST00000487617 PRKAR2BP31323 418 aa27.35■■□□□ 1.97
HDAC4-209ENST00000487617 SMIM5Q71RC9 77 aa27.35■■□□□ 1.97
HDAC4-209ENST00000487617 RSPH6AQ9H0K4 717 aa27.35■■□□□ 1.97
HDAC4-209ENST00000487617 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.34■■□□□ 1.97
HDAC4-209ENST00000487617 MSL1Q68DK7 614 aa27.34■■□□□ 1.97
HDAC4-209ENST00000487617 SYT17Q9BSW7 474 aa27.34■■□□□ 1.97
HDAC4-209ENST00000487617 SCN11AQ9UI33 1791 aa27.33■■□□□ 1.97
HDAC4-209ENST00000487617 SSFA2P28290 1259 aa27.33■■□□□ 1.97
HDAC4-209ENST00000487617 MAP3K5Q99683 1374 aa27.32■■□□□ 1.96
HDAC4-209ENST00000487617 DCAF8L1A6NGE4 600 aa27.31■■□□□ 1.96
HDAC4-209ENST00000487617 GNAT3A8MTJ3 354 aa27.31■■□□□ 1.96
HDAC4-209ENST00000487617 PHACTR3Q96KR7 559 aa27.31■■□□□ 1.96
HDAC4-209ENST00000487617 KLHL34Q8N239 644 aa27.3■■□□□ 1.96
HDAC4-209ENST00000487617 MRC1P22897 1456 aa27.3■■□□□ 1.96
HDAC4-209ENST00000487617 FCHSD2O94868 740 aa27.29■■□□□ 1.96
HDAC4-209ENST00000487617 CNTNAP4Q9C0A0 1308 aa27.28■■□□□ 1.96
HDAC4-209ENST00000487617 ZEB1P37275 1124 aaPredicted RBP27.28■■□□□ 1.96
HDAC4-209ENST00000487617 SLC39A6Q13433 755 aa27.28■■□□□ 1.96
HDAC4-209ENST00000487617 RC3H1Q5TC82 1133 aaKnown RBP27.28■■□□□ 1.96
HDAC4-209ENST00000487617 RTCBQ9Y3I0 505 aaKnown RBP27.28■■□□□ 1.96
HDAC4-209ENST00000487617 UBR3Q6ZT12 1888 aa27.27■■□□□ 1.96
HDAC4-209ENST00000487617 ZNF831Q5JPB2 1677 aa27.27■■□□□ 1.96
HDAC4-209ENST00000487617 RALBP1Q15311 655 aa27.27■■□□□ 1.96
HDAC4-209ENST00000487617 COL24A1Q17RW2 1714 aa27.27■■□□□ 1.96
HDAC4-209ENST00000487617 IL17REQ8NFR9 667 aa27.26■■□□□ 1.95
HDAC4-209ENST00000487617 ADAMTS7Q9UKP4 1686 aa27.25■■□□□ 1.95
HDAC4-209ENST00000487617 TEFQ10587 303 aa27.25■■□□□ 1.95
HDAC4-209ENST00000487617 TRAPPC3LQ5T215 181 aa27.24■■□□□ 1.95
HDAC4-209ENST00000487617 RPS6KA4O75676 772 aa27.23■■□□□ 1.95
HDAC4-209ENST00000487617 CRKLP46109 303 aaKnown RBP27.23■■□□□ 1.95
HDAC4-209ENST00000487617 ADRA2BP18089 450 aa27.21■■□□□ 1.95
HDAC4-209ENST00000487617 DNAJC10Q8IXB1 793 aa27.21■■□□□ 1.95
HDAC4-209ENST00000487617 COL5A3P25940 1745 aaPredicted RBP27.2■■□□□ 1.94
HDAC4-209ENST00000487617 TTC5Q8N0Z6 440 aa27.2■■□□□ 1.94
HDAC4-209ENST00000487617 ARHGEF1Q92888 912 aaKnown RBP27.2■■□□□ 1.94
HDAC4-209ENST00000487617 RTF1Q92541 710 aaKnown RBP27.19■■□□□ 1.94
HDAC4-209ENST00000487617 VIRMAQ69YN4 1812 aaKnown RBP27.18■■□□□ 1.94
HDAC4-209ENST00000487617 KCPQ6ZWJ8 1503 aa27.18■■□□□ 1.94
HDAC4-209ENST00000487617 NEFMP07197 916 aa27.18■■□□□ 1.94
HDAC4-209ENST00000487617 RFC4P35249 363 aa27.18■■□□□ 1.94
HDAC4-209ENST00000487617 CEMIPQ8WUJ3 1361 aa27.18■■□□□ 1.94
HDAC4-209ENST00000487617 TJP1Q07157 1748 aa27.17■■□□□ 1.94
HDAC4-209ENST00000487617 INTS5Q6P9B9 1019 aaKnown RBP27.16■■□□□ 1.94
HDAC4-209ENST00000487617 VSIG10Q8N0Z9 540 aa27.16■■□□□ 1.94
HDAC4-209ENST00000487617 NLGN2Q8NFZ4 835 aa27.16■■□□□ 1.94
HDAC4-209ENST00000487617 CCDC87Q9NVE4 849 aa27.16■■□□□ 1.94
HDAC4-209ENST00000487617 CYP19A1P11511 503 aaPredicted RBP27.15■■□□□ 1.94
HDAC4-209ENST00000487617 ZNF790Q6PG37 636 aa27.15■■□□□ 1.94
HDAC4-209ENST00000487617 CICQ96RK0 1608 aaPredicted RBP27.15■■□□□ 1.94
HDAC4-209ENST00000487617 MYBBP1AQ9BQG0 1328 aaKnown RBP27.15■■□□□ 1.94
HDAC4-209ENST00000487617 MCM10Q7L590 875 aa27.14■■□□□ 1.94
HDAC4-209ENST00000487617 BTBD11A6QL63 1104 aa27.13■■□□□ 1.93
HDAC4-209ENST00000487617 NLGN1Q8N2Q7 840 aa27.13■■□□□ 1.93
HDAC4-209ENST00000487617 ZNF496Q96IT1 587 aaPredicted RBP27.13■■□□□ 1.93
HDAC4-209ENST00000487617 MYH14Q7Z406 1995 aaKnown RBP27.13■■□□□ 1.93
HDAC4-209ENST00000487617 HTATSF1O43719 755 aaKnown RBP27.12■■□□□ 1.93
HDAC4-209ENST00000487617 PLEKHF1Q96S99 279 aa27.12■■□□□ 1.93
HDAC4-209ENST00000487617 PNNQ9H307 717 aaKnown RBP27.12■■□□□ 1.93
HDAC4-209ENST00000487617 CD2APQ9Y5K6 639 aa27.12■■□□□ 1.93
HDAC4-209ENST00000487617 MMP10P09238 476 aa27.11■■□□□ 1.93
HDAC4-209ENST00000487617 GYS1P13807 737 aa27.11■■□□□ 1.93
HDAC4-209ENST00000487617 DCTN1Q14203 1278 aa27.11■■□□□ 1.93
HDAC4-209ENST00000487617 GPR162Q16538 588 aa27.11■■□□□ 1.93
HDAC4-209ENST00000487617 PELP1Q8IZL8 1130 aaKnown RBP27.1■■□□□ 1.93
HDAC4-209ENST00000487617 STARD3NLO95772 234 aa27.09■■□□□ 1.93
HDAC4-209ENST00000487617 FMNL2Q96PY5 1086 aa27.09■■□□□ 1.93
HDAC4-209ENST00000487617 SRP68Q9UHB9 627 aaKnown RBP27.09■■□□□ 1.93
HDAC4-209ENST00000487617 MAPK8IP3Q9UPT6 1336 aa27.09■■□□□ 1.93
HDAC4-209ENST00000487617 HEG1Q9ULI3 1381 aa27.09■■□□□ 1.93
HDAC4-209ENST00000487617 KCNQ3O43525 872 aa27.08■■□□□ 1.93
HDAC4-209ENST00000487617 ZBTB1Q9Y2K1 713 aa27.08■■□□□ 1.93
HDAC4-209ENST00000487617 SOS1Q07889 1333 aaPredicted RBP27.08■■□□□ 1.93
HDAC4-209ENST00000487617 SIPA1L3O60292 1781 aaPredicted RBP27.07■■□□□ 1.92
HDAC4-209ENST00000487617 UBR2Q8IWV8 1755 aa27.07■■□□□ 1.92
HDAC4-209ENST00000487617 YY1P25490 414 aa27.07■■□□□ 1.92
HDAC4-209ENST00000487617 TEX13AQ9BXU3 409 aaPredicted RBP27.07■■□□□ 1.92
HDAC4-209ENST00000487617 USP42Q9H9J4 1324 aaKnown RBP27.07■■□□□ 1.92
HDAC4-209ENST00000487617 NFE2L2Q16236 605 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms