RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 MRS2Q9HD23 443 aa8.81□□□□□ -1
PTPRE-209ENST00000487428 UBR3Q6ZT12 1888 aa8.81□□□□□ -1
PTPRE-209ENST00000487428 MYH14Q7Z406 1995 aaKnown RBP8.81□□□□□ -1
PTPRE-209ENST00000487428 MAPK8IP3Q9UPT6 1336 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 KCNQ2O43526 872 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 TMPOP42166 694 aaKnown RBP8.8□□□□□ -1
PTPRE-209ENST00000487428 CCDC184Q52MB2 194 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 IL17REQ8NFR9 667 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 PIGBQ92521 554 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 TMOD3Q9NYL9 352 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 TUBGCP6Q96RT7 1819 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 TJP1Q07157 1748 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 KCPQ6ZWJ8 1503 aa8.8□□□□□ -1
PTPRE-209ENST00000487428 LAMB4A4D0S4 1761 aa8.79□□□□□ -1
PTPRE-209ENST00000487428 APBA3O96018 575 aa8.79□□□□□ -1
PTPRE-209ENST00000487428 VSIG10Q8N0Z9 540 aa8.79□□□□□ -1
PTPRE-209ENST00000487428 PALLDQ8WX93 1383 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 C4BP0C0L5 1744 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 CABP4P57796 275 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 MPRIPQ6WCQ1 1025 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 PTF1AQ7RTS3 328 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 PROM2Q8N271 834 aa8.78□□□□□ -1
PTPRE-209ENST00000487428 RTF1Q92541 710 aaKnown RBP8.78□□□□□ -1
PTPRE-209ENST00000487428 HEG1Q9ULI3 1381 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 CASZ1Q86V15 1759 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 TXNRD1Q16881 649 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 NFATC2IPQ8NCF5 419 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 ACSBG1Q96GR2 724 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 LGR6Q9HBX8 967 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 ATG3Q9NT62 314 aa8.77□□□□□ -1.01
PTPRE-209ENST00000487428 RIPK4P57078 832 aa8.76□□□□□ -1.01
PTPRE-209ENST00000487428 CALD1Q05682 793 aaKnown RBP8.76□□□□□ -1.01
PTPRE-209ENST00000487428 EN1Q05925 392 aaPredicted RBP8.76□□□□□ -1.01
PTPRE-209ENST00000487428 TEFQ10587 303 aa8.76□□□□□ -1.01
PTPRE-209ENST00000487428 TAF7Q15545 349 aaPredicted RBP8.76□□□□□ -1.01
PTPRE-209ENST00000487428 RC3H1Q5TC82 1133 aaKnown RBP8.76□□□□□ -1.01
PTPRE-209ENST00000487428 DEFB132Q7Z7B7 95 aa8.76□□□□□ -1.01
PTPRE-209ENST00000487428 TRIM35Q9UPQ4 493 aa8.76□□□□□ -1.01
PTPRE-209ENST00000487428 IL16Q14005 1332 aa8.76□□□□□ -1.01
PTPRE-209ENST00000487428 LOC102724428A0A0B4J2F2 783 aa8.75□□□□□ -1.01
PTPRE-209ENST00000487428 SIK1P57059 783 aa8.75□□□□□ -1.01
PTPRE-209ENST00000487428 EZH2Q15910 746 aaKnown RBP8.75□□□□□ -1.01
PTPRE-209ENST00000487428 ZNF790Q6PG37 636 aa8.75□□□□□ -1.01
PTPRE-209ENST00000487428 TEX13AQ9BXU3 409 aaPredicted RBP8.75□□□□□ -1.01
PTPRE-209ENST00000487428 ASAP1Q9ULH1 1129 aa8.75□□□□□ -1.01
PTPRE-209ENST00000487428 SOS1Q07889 1333 aaPredicted RBP8.75□□□□□ -1.01
PTPRE-209ENST00000487428 CHL1O00533 1208 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 APAF1O14727 1248 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 ZNF853P0CG23 659 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 SYTL4Q96C24 671 aaPredicted RBP8.74□□□□□ -1.01
PTPRE-209ENST00000487428 LRRC4BQ9NT99 713 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 ZNF521Q96K83 1311 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 CNTNAP4Q9C0A0 1308 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 C4AP0C0L4 1744 aa8.74□□□□□ -1.01
PTPRE-209ENST00000487428 RGL2O15211 777 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 HOXB7P09629 217 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 NBPF14Q5TI25 921 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 WDR63Q8IWG1 891 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 FLAD1Q8NFF5 587 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 AKT1S1Q96B36 256 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 CFAP44Q96MT7 982 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 IFT57Q9NWB7 429 aa8.73□□□□□ -1.01
PTPRE-209ENST00000487428 LRP5O75197 1615 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 BTBD11A6QL63 1104 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 ADRA2BP18089 450 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 SLC15A2Q16348 729 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 MCM10Q7L590 875 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 WWC1Q8IX03 1113 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 CCDC146Q8IYE0 955 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 TTC5Q8N0Z6 440 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 MIER1Q8N108 512 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 SLC16A10Q8TF71 515 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 FMNL2Q96PY5 1086 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 SLC4A9Q96Q91 983 aa8.72□□□□□ -1.01
PTPRE-209ENST00000487428 CCNL1Q9UK58 526 aaPredicted RBP8.72□□□□□ -1.01
PTPRE-209ENST00000487428 GNAI1P63096 354 aa8.71□□□□□ -1.02
PTPRE-209ENST00000487428 ZNF496Q96IT1 587 aaPredicted RBP8.71□□□□□ -1.02
PTPRE-209ENST00000487428 CHMP4AQ9BY43 222 aa8.71□□□□□ -1.02
PTPRE-209ENST00000487428 ERBB4Q15303 1308 aa8.71□□□□□ -1.02
PTPRE-209ENST00000487428 BCORQ6W2J9 1755 aa8.71□□□□□ -1.02
PTPRE-209ENST00000487428 SNRPA1P09661 255 aaKnown RBP8.7□□□□□ -1.02
PTPRE-209ENST00000487428 SSFA2P28290 1259 aa8.7□□□□□ -1.02
PTPRE-209ENST00000487428 ATP6V1AP38606 617 aa8.7□□□□□ -1.02
PTPRE-209ENST00000487428 EIF4A1P60842 406 aaKnown RBP8.7□□□□□ -1.02
PTPRE-209ENST00000487428 ITPK1Q13572 414 aa8.7□□□□□ -1.02
PTPRE-209ENST00000487428 DCTN1Q14203 1278 aa8.7□□□□□ -1.02
PTPRE-209ENST00000487428 SCN7AQ01118 1682 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 NUP98P52948 1817 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 GIGYF1O75420 1035 aaPredicted RBP8.69□□□□□ -1.02
PTPRE-209ENST00000487428 RPS6KA4O75676 772 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 STARD3NLO95772 234 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 CYP19A1P11511 503 aaPredicted RBP8.69□□□□□ -1.02
PTPRE-209ENST00000487428 FAM9BQ8IZU0 186 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 ANO8Q9HCE9 1232 aaPredicted RBP8.69□□□□□ -1.02
PTPRE-209ENST00000487428 STK32BQ9NY57 414 aa8.69□□□□□ -1.02
PTPRE-209ENST00000487428 KIF13BQ9NQT8 1826 aa8.68□□□□□ -1.02
PTPRE-209ENST00000487428 SLC39A6Q13433 755 aa8.68□□□□□ -1.02
PTPRE-209ENST00000487428 LINC00116Q8NCU8 138 aa8.68□□□□□ -1.02
PTPRE-209ENST00000487428 PTCD1O75127 700 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 IL6STP40189 918 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms