RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 TRMT2AQ8IZ69 625 aaKnown RBP12.5□□□□□ -0.41
MCF2L-227ENST00000486806 BABAM1Q9NWV8 329 aa12.5□□□□□ -0.41
MCF2L-227ENST00000486806 FANCIQ9NVI1 1328 aa12.5□□□□□ -0.41
MCF2L-227ENST00000486806 VIRMAQ69YN4 1812 aaKnown RBP12.5□□□□□ -0.41
MCF2L-227ENST00000486806 KDM3BQ7LBC6 1761 aa12.49□□□□□ -0.41
MCF2L-227ENST00000486806 GNAI1P63096 354 aa12.49□□□□□ -0.41
MCF2L-227ENST00000486806 TAF7Q15545 349 aaPredicted RBP12.49□□□□□ -0.41
MCF2L-227ENST00000486806 DUSP27Q5VZP5 1158 aa12.49□□□□□ -0.41
MCF2L-227ENST00000486806 CABP4P57796 275 aa12.48□□□□□ -0.41
MCF2L-227ENST00000486806 FAM182BQ5T319 152 aa12.48□□□□□ -0.41
MCF2L-227ENST00000486806 NFATC2IPQ8NCF5 419 aa12.48□□□□□ -0.41
MCF2L-227ENST00000486806 MBIPQ9NS73 344 aa12.48□□□□□ -0.41
MCF2L-227ENST00000486806 KCPQ6ZWJ8 1503 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 BTBD11A6QL63 1104 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 PRIM1P49642 420 aaKnown RBP12.47□□□□□ -0.41
MCF2L-227ENST00000486806 PIGBQ92521 554 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 TSR2Q969E8 191 aaKnown RBP12.47□□□□□ -0.41
MCF2L-227ENST00000486806 MYH16Q9H6N6 1097 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 TMOD3Q9NYL9 352 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 TSPYL4Q9UJ04 414 aa12.47□□□□□ -0.41
MCF2L-227ENST00000486806 EP400Q96L91 3159 aa12.46□□□□□ -0.41
MCF2L-227ENST00000486806 FAM196AQ6ZSG2 479 aa12.46□□□□□ -0.41
MCF2L-227ENST00000486806 ACSBG1Q96GR2 724 aa12.46□□□□□ -0.41
MCF2L-227ENST00000486806 MIS18AQ9NYP9 233 aa12.46□□□□□ -0.41
MCF2L-227ENST00000486806 ITGB4P16144 1822 aa12.46□□□□□ -0.42
MCF2L-227ENST00000486806 UBR2Q8IWV8 1755 aa12.46□□□□□ -0.42
MCF2L-227ENST00000486806 HEG1Q9ULI3 1381 aa12.45□□□□□ -0.42
MCF2L-227ENST00000486806 KCNQ2O43526 872 aa12.45□□□□□ -0.42
MCF2L-227ENST00000486806 ZNF790Q6PG37 636 aa12.45□□□□□ -0.42
MCF2L-227ENST00000486806 LAS1LQ9Y4W2 734 aaKnown RBP12.45□□□□□ -0.42
MCF2L-227ENST00000486806 SBF2Q86WG5 1849 aa12.44□□□□□ -0.42
MCF2L-227ENST00000486806 KCNQ3O43525 872 aa12.44□□□□□ -0.42
MCF2L-227ENST00000486806 SLC39A6Q13433 755 aa12.44□□□□□ -0.42
MCF2L-227ENST00000486806 PTF1AQ7RTS3 328 aa12.44□□□□□ -0.42
MCF2L-227ENST00000486806 SYTL4Q96C24 671 aaPredicted RBP12.44□□□□□ -0.42
MCF2L-227ENST00000486806 EIF4A1P60842 406 aaKnown RBP12.43□□□□□ -0.42
MCF2L-227ENST00000486806 BCL11BQ9C0K0 894 aaPredicted RBP12.43□□□□□ -0.42
MCF2L-227ENST00000486806 ATG3Q9NT62 314 aa12.43□□□□□ -0.42
MCF2L-227ENST00000486806 CICQ96RK0 1608 aaPredicted RBP12.43□□□□□ -0.42
MCF2L-227ENST00000486806 BTAF1O14981 1849 aa12.42□□□□□ -0.42
MCF2L-227ENST00000486806 KRT24Q2M2I5 525 aa12.42□□□□□ -0.42
MCF2L-227ENST00000486806 ASAP1Q9ULH1 1129 aa12.42□□□□□ -0.42
MCF2L-227ENST00000486806 PALLDQ8WX93 1383 aa12.42□□□□□ -0.42
MCF2L-227ENST00000486806 EXOSC9Q06265 439 aaKnown RBP12.41□□□□□ -0.42
MCF2L-227ENST00000486806 TTC5Q8N0Z6 440 aa12.41□□□□□ -0.42
MCF2L-227ENST00000486806 ZNF496Q96IT1 587 aaPredicted RBP12.41□□□□□ -0.42
MCF2L-227ENST00000486806 TNS1Q9HBL0 1735 aaKnown RBP12.41□□□□□ -0.42
MCF2L-227ENST00000486806 SOS1Q07889 1333 aaPredicted RBP12.4□□□□□ -0.42
MCF2L-227ENST00000486806 HOXB7P09629 217 aa12.4□□□□□ -0.42
MCF2L-227ENST00000486806 CT47B1P0C2W7 299 aaPredicted RBP12.4□□□□□ -0.42
MCF2L-227ENST00000486806 TSPYL6Q8N831 410 aa12.4□□□□□ -0.42
MCF2L-227ENST00000486806 C8orf58Q8NAV2 365 aa12.4□□□□□ -0.42
MCF2L-227ENST00000486806 FMNL2Q96PY5 1086 aa12.4□□□□□ -0.42
MCF2L-227ENST00000486806 C5P01031 1676 aa12.39□□□□□ -0.43
MCF2L-227ENST00000486806 ZNF831Q5JPB2 1677 aa12.39□□□□□ -0.43
MCF2L-227ENST00000486806 GIGYF1O75420 1035 aaPredicted RBP12.39□□□□□ -0.43
MCF2L-227ENST00000486806 TRIM37O94972 964 aa12.39□□□□□ -0.43
MCF2L-227ENST00000486806 SMARCC1Q92922 1105 aaPredicted RBP12.39□□□□□ -0.43
MCF2L-227ENST00000486806 TJP1Q07157 1748 aa12.38□□□□□ -0.43
MCF2L-227ENST00000486806 TWISTNBQ3B726 338 aaPredicted RBP12.38□□□□□ -0.43
MCF2L-227ENST00000486806 VSIG10Q8N0Z9 540 aa12.38□□□□□ -0.43
MCF2L-227ENST00000486806 SLC4A9Q96Q91 983 aa12.38□□□□□ -0.43
MCF2L-227ENST00000486806 LAMB4A4D0S4 1761 aa12.38□□□□□ -0.43
MCF2L-227ENST00000486806 RGPD3A6NKT7 1758 aaPredicted RBP12.38□□□□□ -0.43
MCF2L-227ENST00000486806 RGPD4Q7Z3J3 1758 aa12.38□□□□□ -0.43
MCF2L-227ENST00000486806 LY75O60449 1722 aa12.37□□□□□ -0.43
MCF2L-227ENST00000486806 PRAMEF22A3QJZ6 481 aa12.37□□□□□ -0.43
MCF2L-227ENST00000486806 PTCD1O75127 700 aaKnown RBP12.37□□□□□ -0.43
MCF2L-227ENST00000486806 VAMP4O75379 141 aa12.37□□□□□ -0.43
MCF2L-227ENST00000486806 LOC102724428A0A0B4J2F2 783 aa12.36□□□□□ -0.43
MCF2L-227ENST00000486806 SNRPA1P09661 255 aaKnown RBP12.36□□□□□ -0.43
MCF2L-227ENST00000486806 SIK1P57059 783 aa12.36□□□□□ -0.43
MCF2L-227ENST00000486806 ZNF428Q96B54 188 aa12.36□□□□□ -0.43
MCF2L-227ENST00000486806 ELL2O00472 640 aaPredicted RBP12.35□□□□□ -0.43
MCF2L-227ENST00000486806 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
MCF2L-227ENST00000486806 PLSCR1O15162 318 aa12.34□□□□□ -0.43
MCF2L-227ENST00000486806 CENPBP07199 599 aaPredicted RBP12.34□□□□□ -0.43
MCF2L-227ENST00000486806 RARSP54136 660 aaKnown RBP12.34□□□□□ -0.43
MCF2L-227ENST00000486806 HDGFL1Q5TGJ6 251 aa12.34□□□□□ -0.43
MCF2L-227ENST00000486806 RREB1Q92766 1687 aa12.34□□□□□ -0.43
MCF2L-227ENST00000486806 COL5A3P25940 1745 aaPredicted RBP12.34□□□□□ -0.43
MCF2L-227ENST00000486806 ITPK1Q13572 414 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 ALDH1L2Q3SY69 923 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 DNAJC10Q8IXB1 793 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 RCAN3Q9UKA8 241 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 USP16Q9Y5T5 823 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 ERBB4Q15303 1308 aa12.33□□□□□ -0.44
MCF2L-227ENST00000486806 APBA3O96018 575 aa12.32□□□□□ -0.44
MCF2L-227ENST00000486806 CYP19A1P11511 503 aaPredicted RBP12.32□□□□□ -0.44
MCF2L-227ENST00000486806 ATP6V1AP38606 617 aa12.32□□□□□ -0.44
MCF2L-227ENST00000486806 SLC27A3Q5K4L6 730 aa12.32□□□□□ -0.44
MCF2L-227ENST00000486806 SSH1Q8WYL5 1049 aa12.32□□□□□ -0.44
MCF2L-227ENST00000486806 TEX13AQ9BXU3 409 aaPredicted RBP12.32□□□□□ -0.44
MCF2L-227ENST00000486806 CCNL1Q9UK58 526 aaPredicted RBP12.32□□□□□ -0.44
MCF2L-227ENST00000486806 BRPF1P55201 1214 aaPredicted RBP12.31□□□□□ -0.44
MCF2L-227ENST00000486806 PDIA6Q15084 440 aa12.31□□□□□ -0.44
MCF2L-227ENST00000486806 CCDC30Q5VVM6 783 aa12.31□□□□□ -0.44
MCF2L-227ENST00000486806 LRP10Q7Z4F1 713 aa12.31□□□□□ -0.44
MCF2L-227ENST00000486806 PROM2Q8N271 834 aa12.31□□□□□ -0.44
MCF2L-227ENST00000486806 LINC00116Q8NCU8 138 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms