RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 FANCAO15360 1455 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 PTGS1P23219 599 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 ARHGEF28Q8N1W1 1705 aaKnown RBP12.79□□□□□ -0.36
CCDC171-208ENST00000486641 RGS12O14924 1447 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 GOLGA6L6A8MZA4 724 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 MEIS3Q99687 375 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 ANO2Q9NQ90 1003 aa12.79□□□□□ -0.36
CCDC171-208ENST00000486641 MORC2Q9Y6X9 1032 aaPredicted RBP12.79□□□□□ -0.36
CCDC171-208ENST00000486641 CDC42BPGQ6DT37 1551 aa12.78□□□□□ -0.36
CCDC171-208ENST00000486641 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
CCDC171-208ENST00000486641 SMTNL1A8MU46 457 aa12.78□□□□□ -0.36
CCDC171-208ENST00000486641 ZSCAN22P10073 491 aaPredicted RBP12.78□□□□□ -0.36
CCDC171-208ENST00000486641 TERF2IPQ9NYB0 399 aa12.78□□□□□ -0.36
CCDC171-208ENST00000486641 MSH6P52701 1360 aa12.77□□□□□ -0.36
CCDC171-208ENST00000486641 FAM83GA6ND36 823 aa12.77□□□□□ -0.36
CCDC171-208ENST00000486641 FIBPO43427 364 aa12.77□□□□□ -0.36
CCDC171-208ENST00000486641 KCNJ4P48050 445 aa12.77□□□□□ -0.36
CCDC171-208ENST00000486641 C16orf45Q96MC5 204 aaPredicted RBP12.77□□□□□ -0.36
CCDC171-208ENST00000486641 CFAP65Q6ZU64 1925 aaKnown RBP12.77□□□□□ -0.37
CCDC171-208ENST00000486641 CHMLP26374 656 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 IRX5P78411 483 aaPredicted RBP12.77□□□□□ -0.37
CCDC171-208ENST00000486641 TERF2Q15554 542 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 KIF18AQ8NI77 898 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 BCL11BQ9C0K0 894 aaPredicted RBP12.77□□□□□ -0.37
CCDC171-208ENST00000486641 POLKQ9UBT6 870 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 CAMSAP1Q5T5Y3 1602 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 CD163L1Q9NR16 1453 aa12.77□□□□□ -0.37
CCDC171-208ENST00000486641 LRMPQ12912 555 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 IL17RAQ96F46 866 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 STX6O43752 255 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 TNNT1P13805 278 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 SYT1P21579 422 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 DCTN1Q14203 1278 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 CCDC186Q7Z3E2 898 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 RILPL2Q969X0 211 aa12.76□□□□□ -0.37
CCDC171-208ENST00000486641 UHRF1BP1LA0JNW5 1464 aa12.75□□□□□ -0.37
CCDC171-208ENST00000486641 IPO4Q8TEX9 1081 aaKnown RBP12.75□□□□□ -0.37
CCDC171-208ENST00000486641 STK26Q9P289 416 aa12.75□□□□□ -0.37
CCDC171-208ENST00000486641 TRIM6-TRIM34B2RNG4 842 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 F13A1P00488 732 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 LARP6Q9BRS8 491 aaKnown RBP12.74□□□□□ -0.37
CCDC171-208ENST00000486641 NRBP1Q9UHY1 535 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 RPGRIP1LQ68CZ1 1315 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 ZFYVE9O95405 1425 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 ZCCHC11Q5TAX3 1644 aaKnown RBP12.74□□□□□ -0.37
CCDC171-208ENST00000486641 CHD1O14646 1710 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 CCDC192P0DO97 292 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 KLHL34Q8N239 644 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC171-208ENST00000486641 SALL3Q9BXA9 1300 aa12.74□□□□□ -0.37
CCDC171-208ENST00000486641 HMMRO75330 724 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 CCDC112Q8NEF3 446 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 IL25Q9H293 177 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 SENP3Q9H4L4 574 aaPredicted RBP12.73□□□□□ -0.37
CCDC171-208ENST00000486641 EXOC6BQ9Y2D4 811 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 PAXBP1Q9Y5B6 917 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 DLG5Q8TDM6 1919 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 CCDC66A2RUB6 948 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 CDK11BP21127 795 aaKnown RBP12.73□□□□□ -0.37
CCDC171-208ENST00000486641 DNM1Q05193 864 aaKnown RBP12.73□□□□□ -0.37
CCDC171-208ENST00000486641 LUZP1Q86V48 1076 aa12.73□□□□□ -0.37
CCDC171-208ENST00000486641 TUBGCP6Q96RT7 1819 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 RIMS2Q9UQ26 1411 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 MINK1Q8N4C8 1332 aaPredicted RBP12.72□□□□□ -0.37
CCDC171-208ENST00000486641 HSPA4P34932 840 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 UNC5CLQ8IV45 518 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 KRT222Q8N1A0 295 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 FAM200AQ8TCP9 573 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 SSH2Q76I76 1423 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 KIAA0232Q92628 1395 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 DTNBO60941 627 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 IL13P35225 146 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 KMT5BQ4FZB7 885 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 ZSCAN25Q6NSZ9 544 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 HDGFL2Q7Z4V5 671 aaPredicted RBP12.72□□□□□ -0.37
CCDC171-208ENST00000486641 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC171-208ENST00000486641 DRC7Q8IY82 874 aa12.72□□□□□ -0.37
CCDC171-208ENST00000486641 LMOD3Q0VAK6 560 aa12.71□□□□□ -0.37
CCDC171-208ENST00000486641 TIGD1Q96MW7 591 aa12.71□□□□□ -0.37
CCDC171-208ENST00000486641 FAM53CQ9NYF3 392 aa12.71□□□□□ -0.37
CCDC171-208ENST00000486641 ATP6V1DQ9Y5K8 247 aa12.71□□□□□ -0.37
CCDC171-208ENST00000486641 MRVI1Q9Y6F6 885 aa12.71□□□□□ -0.37
CCDC171-208ENST00000486641 AK2P54819 239 aa12.71□□□□□ -0.38
CCDC171-208ENST00000486641 TPD52L1Q16890 204 aaPredicted RBP12.71□□□□□ -0.38
CCDC171-208ENST00000486641 CABP1Q9NZU7 370 aa12.71□□□□□ -0.38
CCDC171-208ENST00000486641 SMC3Q9UQE7 1217 aa12.71□□□□□ -0.38
CCDC171-208ENST00000486641 ERCC6L2Q5T890 1561 aa12.71□□□□□ -0.38
CCDC171-208ENST00000486641 ABCC3O15438 1527 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 VGFO15240 615 aaPredicted RBP12.7□□□□□ -0.38
CCDC171-208ENST00000486641 CAMK4Q16566 473 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 RUFY3Q7L099 469 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 ZNF592Q92610 1267 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 TTC14Q96N46 770 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.7□□□□□ -0.38
CCDC171-208ENST00000486641 EMILIN1Q9Y6C2 1016 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 MAP2P11137 1827 aaKnown RBP12.7□□□□□ -0.38
CCDC171-208ENST00000486641 LMTK2Q8IWU2 1503 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 KIF20BQ96Q89 1820 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 PTPRCP08575 1304 aa12.7□□□□□ -0.38
CCDC171-208ENST00000486641 ERICH4A6NGS2 130 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms