RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.67□□□□□ -0.06
HMGN1-215ENST00000485550 TATP17735 454 aaPredicted RBP14.67□□□□□ -0.06
HMGN1-215ENST00000485550 DNAJC5GQ8N7S2 189 aa14.67□□□□□ -0.06
HMGN1-215ENST00000485550 BRCA1P38398 1863 aaKnown RBP14.67□□□□□ -0.06
HMGN1-215ENST00000485550 CGNL1Q0VF96 1302 aa14.66□□□□□ -0.06
HMGN1-215ENST00000485550 PCDH11XQ9BZA7 1347 aa14.66□□□□□ -0.06
HMGN1-215ENST00000485550 PCDH11YQ9BZA8 1340 aa14.66□□□□□ -0.06
HMGN1-215ENST00000485550 CHRDL2Q6WN34 429 aa14.66□□□□□ -0.06
HMGN1-215ENST00000485550 PKD1L3Q7Z443 1732 aa14.66□□□□□ -0.06
HMGN1-215ENST00000485550 RTL1A6NKG5 1358 aa14.65□□□□□ -0.06
HMGN1-215ENST00000485550 KIF20BQ96Q89 1820 aa14.65□□□□□ -0.06
HMGN1-215ENST00000485550 PPM1GO15355 546 aaPredicted RBP14.65□□□□□ -0.06
HMGN1-215ENST00000485550 TOMM70O94826 608 aa14.65□□□□□ -0.06
HMGN1-215ENST00000485550 ZBTB12Q9Y330 459 aaPredicted RBP14.65□□□□□ -0.06
HMGN1-215ENST00000485550 EMILIN1Q9Y6C2 1016 aa14.65□□□□□ -0.06
HMGN1-215ENST00000485550 CYP27B1O15528 508 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 HMGB2P26583 209 aaKnown RBP14.64□□□□□ -0.07
HMGN1-215ENST00000485550 LINC00116Q8NCU8 138 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 CCER1Q8TC90 406 aaPredicted RBP14.64□□□□□ -0.07
HMGN1-215ENST00000485550 SMARCC1Q92922 1105 aaPredicted RBP14.64□□□□□ -0.07
HMGN1-215ENST00000485550 NMRK2Q9NPI5 230 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 SMG6Q86US8 1419 aaKnown RBP14.64□□□□□ -0.07
HMGN1-215ENST00000485550 NSD3Q9BZ95 1437 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 ARFGEF1Q9Y6D6 1849 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 CLSPNQ9HAW4 1339 aa14.64□□□□□ -0.07
HMGN1-215ENST00000485550 HTRA3P83110 453 aa14.63□□□□□ -0.07
HMGN1-215ENST00000485550 BCS1LQ9Y276 419 aa14.63□□□□□ -0.07
HMGN1-215ENST00000485550 PXDNLA1KZ92 1463 aa14.63□□□□□ -0.07
HMGN1-215ENST00000485550 SBF1O95248 1867 aa14.62□□□□□ -0.07
HMGN1-215ENST00000485550 ATXN8OSP0DMR3 200 aa14.62□□□□□ -0.07
HMGN1-215ENST00000485550 SSFA2P28290 1259 aa14.62□□□□□ -0.07
HMGN1-215ENST00000485550 COL13A1Q5TAT6 717 aaPredicted RBP14.62□□□□□ -0.07
HMGN1-215ENST00000485550 PIGBQ92521 554 aa14.62□□□□□ -0.07
HMGN1-215ENST00000485550 INSRP06213 1382 aa14.61□□□□□ -0.07
HMGN1-215ENST00000485550 HSPA5P11021 654 aaKnown RBP14.61□□□□□ -0.07
HMGN1-215ENST00000485550 FLT4P35916 1363 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 LOC102724428A0A0B4J2F2 783 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 A0A0G2JLW4 131 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 GNPATO15228 680 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 MMP10P09238 476 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 TNNT2P45379 298 aaPredicted RBP14.6□□□□□ -0.07
HMGN1-215ENST00000485550 SIK1P57059 783 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 ARHGAP27Q6ZUM4 889 aa14.6□□□□□ -0.07
HMGN1-215ENST00000485550 EIF4G2P78344 907 aaKnown RBP eCLIP14.59□□□□□ -0.071e-6■□□□□ 9.4
HMGN1-215ENST00000485550 C4AP0C0L4 1744 aa14.58□□□□□ -0.07
HMGN1-215ENST00000485550 ITPK1Q13572 414 aa14.58□□□□□ -0.08
HMGN1-215ENST00000485550 KLRG1Q96E93 195 aa14.58□□□□□ -0.08
HMGN1-215ENST00000485550 CCDC88AQ3V6T2 1871 aa14.58□□□□□ -0.08
HMGN1-215ENST00000485550 MYH14Q7Z406 1995 aaKnown RBP14.58□□□□□ -0.08
HMGN1-215ENST00000485550 ATP6V1AP38606 617 aa14.57□□□□□ -0.08
HMGN1-215ENST00000485550 C16orf71Q8IYS4 520 aaPredicted RBP14.57□□□□□ -0.08
HMGN1-215ENST00000485550 RBM46Q8TBY0 533 aaKnown RBP14.57□□□□□ -0.08
HMGN1-215ENST00000485550 ASAP1Q9ULH1 1129 aa14.57□□□□□ -0.08
HMGN1-215ENST00000485550 COL5A3P25940 1745 aaPredicted RBP14.56□□□□□ -0.08
HMGN1-215ENST00000485550 FCHSD2O94868 740 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 DPEP1P16444 411 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 TGFB2P61812 414 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 PANK3Q9H999 370 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 POLKQ9UBT6 870 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 C10orf71Q711Q0 1435 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 KCPQ6ZWJ8 1503 aa14.56□□□□□ -0.08
HMGN1-215ENST00000485550 TNRC6CQ9HCJ0 1690 aaKnown RBP14.55□□□□□ -0.08
HMGN1-215ENST00000485550 PCNTO95613 3336 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 C9orf131Q5VYM1 1079 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 JMYQ8N9B5 988 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 EYA1Q99502 592 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 TMOD3Q9NYL9 352 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 WASHC2AQ641Q2 1341 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 KIF24Q5T7B8 1368 aa14.55□□□□□ -0.08
HMGN1-215ENST00000485550 NKX1-1Q15270 411 aaPredicted RBP14.54□□□□□ -0.08
HMGN1-215ENST00000485550 TNS4Q8IZW8 715 aa14.54□□□□□ -0.08
HMGN1-215ENST00000485550 TRAPPC3LQ5T215 181 aa14.53□□□□□ -0.08
HMGN1-215ENST00000485550 SPG7Q9UQ90 795 aa14.53□□□□□ -0.08
HMGN1-215ENST00000485550 CCDC87Q9NVE4 849 aa14.52□□□□□ -0.09
HMGN1-215ENST00000485550 RTCBQ9Y3I0 505 aaKnown RBP14.52□□□□□ -0.09
HMGN1-215ENST00000485550 ANKRD26Q9UPS8 1709 aa14.52□□□□□ -0.09
HMGN1-215ENST00000485550 PLEKHG2Q9H7P9 1386 aa14.51□□□□□ -0.09
HMGN1-215ENST00000485550 FSTL1Q12841 308 aa14.51□□□□□ -0.09
HMGN1-215ENST00000485550 EIF4A2Q14240 407 aaKnown RBP14.51□□□□□ -0.09
HMGN1-215ENST00000485550 NLGN1Q8N2Q7 840 aa14.51□□□□□ -0.09
HMGN1-215ENST00000485550 RRAGCQ9HB90 399 aa14.51□□□□□ -0.09
HMGN1-215ENST00000485550 ATG3Q9NT62 314 aa14.51□□□□□ -0.09
HMGN1-215ENST00000485550 NCAPD2Q15021 1401 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 ZNF831Q5JPB2 1677 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 GYS1P13807 737 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 KCNA3P22001 575 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 PRELPP51888 382 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 ARHGEF1Q92888 912 aaKnown RBP14.5□□□□□ -0.09
HMGN1-215ENST00000485550 RNF181Q9P0P0 153 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 PARP3Q9Y6F1 533 aa14.5□□□□□ -0.09
HMGN1-215ENST00000485550 SLC4A9Q96Q91 983 aa14.49□□□□□ -0.09
HMGN1-215ENST00000485550 KDRP35968 1356 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 KDM2BQ8NHM5 1336 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 PHKG2P15735 406 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 RFC4P35249 363 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 MORC1Q86VD1 984 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 IFNL2Q8IZJ0 200 aa14.48□□□□□ -0.09
HMGN1-215ENST00000485550 AFDNP55196 1824 aaKnown RBP14.48□□□□□ -0.09
HMGN1-215ENST00000485550 PIM2Q9P1W9 311 aa14.47□□□□□ -0.09
HMGN1-215ENST00000485550 REM2Q8IYK8 340 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms