RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 LINC00116Q8NCU8 138 aa23.72■■□□□ 1.39
COL9A3-212ENST00000481800 PHF14O94880 888 aa23.71■■□□□ 1.39
COL9A3-212ENST00000481800 ITPK1Q13572 414 aa23.71■■□□□ 1.39
COL9A3-212ENST00000481800 KLHL34Q8N239 644 aa23.71■■□□□ 1.39
COL9A3-212ENST00000481800 NFATC2IPQ8NCF5 419 aa23.71■■□□□ 1.39
COL9A3-212ENST00000481800 QSER1Q2KHR3 1735 aa23.7■■□□□ 1.38
COL9A3-212ENST00000481800 C5P01031 1676 aa23.7■■□□□ 1.38
COL9A3-212ENST00000481800 MTHFSDQ2M296 383 aaKnown RBP23.69■■□□□ 1.38
COL9A3-212ENST00000481800 MSL1Q68DK7 614 aa23.69■■□□□ 1.38
COL9A3-212ENST00000481800 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.68■■□□□ 1.38
COL9A3-212ENST00000481800 GNPATO15228 680 aa23.68■■□□□ 1.38
COL9A3-212ENST00000481800 SSFA2P28290 1259 aa23.68■■□□□ 1.38
COL9A3-212ENST00000481800 PPP2R1AP30153 589 aa23.68■■□□□ 1.38
COL9A3-212ENST00000481800 NUDCQ9Y266 331 aa23.68■■□□□ 1.38
COL9A3-212ENST00000481800 COL3A1P02461 1466 aaPredicted RBP23.67■■□□□ 1.38
COL9A3-212ENST00000481800 PTCD1O75127 700 aaKnown RBP23.66■■□□□ 1.38
COL9A3-212ENST00000481800 LGR6Q9HBX8 967 aa23.66■■□□□ 1.38
COL9A3-212ENST00000481800 C4BP0C0L5 1744 aa23.66■■□□□ 1.38
COL9A3-212ENST00000481800 MAP3K5Q99683 1374 aa23.65■■□□□ 1.38
COL9A3-212ENST00000481800 RNMTO43148 476 aaKnown RBP23.65■■□□□ 1.38
COL9A3-212ENST00000481800 SMIM5Q71RC9 77 aa23.65■■□□□ 1.38
COL9A3-212ENST00000481800 SLC52A2Q9HAB3 445 aa23.65■■□□□ 1.38
COL9A3-212ENST00000481800 AMIGO3Q86WK7 504 aa23.64■■□□□ 1.37
COL9A3-212ENST00000481800 SLC4A9Q96Q91 983 aa23.64■■□□□ 1.37
COL9A3-212ENST00000481800 TUBGCP6Q96RT7 1819 aa23.63■■□□□ 1.37
COL9A3-212ENST00000481800 GAS2L2Q8NHY3 880 aa23.63■■□□□ 1.37
COL9A3-212ENST00000481800 RTCBQ9Y3I0 505 aaKnown RBP23.63■■□□□ 1.37
COL9A3-212ENST00000481800 U2AF1L5P0DN76 240 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-212ENST00000481800 U2AF1Q01081 240 aaKnown RBP eCLIP23.61■■□□□ 1.37
COL9A3-212ENST00000481800 RC3H1Q5TC82 1133 aaKnown RBP23.61■■□□□ 1.37
COL9A3-212ENST00000481800 TAF1LQ8IZX4 1826 aa23.61■■□□□ 1.37
COL9A3-212ENST00000481800 TRAPPC3LQ5T215 181 aa23.6■■□□□ 1.37
COL9A3-212ENST00000481800 CNTNAP4Q9C0A0 1308 aa23.59■■□□□ 1.37
COL9A3-212ENST00000481800 PRKAR2BP31323 418 aa23.59■■□□□ 1.37
COL9A3-212ENST00000481800 GNAT3A8MTJ3 354 aa23.58■■□□□ 1.37
COL9A3-212ENST00000481800 YY1P25490 414 aa23.58■■□□□ 1.37
COL9A3-212ENST00000481800 ADRA2BP18089 450 aa23.57■■□□□ 1.36
COL9A3-212ENST00000481800 GPR162Q16538 588 aa23.57■■□□□ 1.36
COL9A3-212ENST00000481800 RSPH6AQ9H0K4 717 aa23.57■■□□□ 1.36
COL9A3-212ENST00000481800 RPS6KA4O75676 772 aa23.56■■□□□ 1.36
COL9A3-212ENST00000481800 TEFQ10587 303 aa23.56■■□□□ 1.36
COL9A3-212ENST00000481800 SLC39A6Q13433 755 aa23.56■■□□□ 1.36
COL9A3-212ENST00000481800 CRKLP46109 303 aaKnown RBP23.55■■□□□ 1.36
COL9A3-212ENST00000481800 PELP1Q8IZL8 1130 aaKnown RBP23.55■■□□□ 1.36
COL9A3-212ENST00000481800 NLGN2Q8NFZ4 835 aa23.55■■□□□ 1.36
COL9A3-212ENST00000481800 PHACTR3Q96KR7 559 aa23.55■■□□□ 1.36
COL9A3-212ENST00000481800 COL24A1Q17RW2 1714 aa23.54■■□□□ 1.36
COL9A3-212ENST00000481800 FCHSD2O94868 740 aa23.54■■□□□ 1.36
COL9A3-212ENST00000481800 RFC4P35249 363 aa23.54■■□□□ 1.36
COL9A3-212ENST00000481800 ARHGEF1Q92888 912 aaKnown RBP23.54■■□□□ 1.36
COL9A3-212ENST00000481800 TTC5Q8N0Z6 440 aa23.53■■□□□ 1.36
COL9A3-212ENST00000481800 IL17REQ8NFR9 667 aa23.53■■□□□ 1.36
COL9A3-212ENST00000481800 CD2APQ9Y5K6 639 aa23.53■■□□□ 1.36
COL9A3-212ENST00000481800 MRC1P22897 1456 aa23.53■■□□□ 1.36
COL9A3-212ENST00000481800 UBR3Q6ZT12 1888 aa23.52■■□□□ 1.36
COL9A3-212ENST00000481800 ZNF831Q5JPB2 1677 aa23.52■■□□□ 1.36
COL9A3-212ENST00000481800 DNAJC10Q8IXB1 793 aa23.52■■□□□ 1.36
COL9A3-212ENST00000481800 SCN11AQ9UI33 1791 aa23.52■■□□□ 1.36
COL9A3-212ENST00000481800 DDX10Q13206 875 aaKnown RBP23.51■■□□□ 1.35
COL9A3-212ENST00000481800 NLGN1Q8N2Q7 840 aa23.51■■□□□ 1.35
COL9A3-212ENST00000481800 NEFMP07197 916 aa23.5■■□□□ 1.35
COL9A3-212ENST00000481800 RTF1Q92541 710 aaKnown RBP23.5■■□□□ 1.35
COL9A3-212ENST00000481800 MMP10P09238 476 aa23.49■■□□□ 1.35
COL9A3-212ENST00000481800 VSIG10Q8N0Z9 540 aa23.49■■□□□ 1.35
COL9A3-212ENST00000481800 CCDC87Q9NVE4 849 aa23.49■■□□□ 1.35
COL9A3-212ENST00000481800 RALBP1Q15311 655 aa23.48■■□□□ 1.35
COL9A3-212ENST00000481800 INTS5Q6P9B9 1019 aaKnown RBP23.48■■□□□ 1.35
COL9A3-212ENST00000481800 CYP19A1P11511 503 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-212ENST00000481800 GYS1P13807 737 aa23.46■■□□□ 1.35
COL9A3-212ENST00000481800 ZNF790Q6PG37 636 aa23.46■■□□□ 1.35
COL9A3-212ENST00000481800 ADAMTS7Q9UKP4 1686 aa23.45■■□□□ 1.34
COL9A3-212ENST00000481800 STARD3NLO95772 234 aa23.44■■□□□ 1.34
COL9A3-212ENST00000481800 COL5A3P25940 1745 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-212ENST00000481800 KCPQ6ZWJ8 1503 aa23.43■■□□□ 1.34
COL9A3-212ENST00000481800 CEMIPQ8WUJ3 1361 aa23.43■■□□□ 1.34
COL9A3-212ENST00000481800 BTBD11A6QL63 1104 aa23.43■■□□□ 1.34
COL9A3-212ENST00000481800 GRIN3BO60391 1043 aa23.43■■□□□ 1.34
COL9A3-212ENST00000481800 ZNF496Q96IT1 587 aaPredicted RBP23.43■■□□□ 1.34
COL9A3-212ENST00000481800 PNNQ9H307 717 aaKnown RBP23.43■■□□□ 1.34
COL9A3-212ENST00000481800 SRP68Q9UHB9 627 aaKnown RBP23.43■■□□□ 1.34
COL9A3-212ENST00000481800 PARP3Q9Y6F1 533 aa23.43■■□□□ 1.34
COL9A3-212ENST00000481800 HTATSF1O43719 755 aaKnown RBP23.42■■□□□ 1.34
COL9A3-212ENST00000481800 ZPR1O75312 459 aa23.42■■□□□ 1.34
COL9A3-212ENST00000481800 MCM10Q7L590 875 aa23.42■■□□□ 1.34
COL9A3-212ENST00000481800 FMNL2Q96PY5 1086 aa23.42■■□□□ 1.34
COL9A3-212ENST00000481800 TEX13AQ9BXU3 409 aaPredicted RBP23.42■■□□□ 1.34
COL9A3-212ENST00000481800 SOS1Q07889 1333 aaPredicted RBP23.41■■□□□ 1.34
COL9A3-212ENST00000481800 USP42Q9H9J4 1324 aaKnown RBP23.41■■□□□ 1.34
COL9A3-212ENST00000481800 ZBTB1Q9Y2K1 713 aa23.41■■□□□ 1.34
COL9A3-212ENST00000481800 TJP1Q07157 1748 aa23.41■■□□□ 1.34
COL9A3-212ENST00000481800 YBX3P16989 372 aaKnown RBP eCLIP23.4■■□□□ 1.34
COL9A3-212ENST00000481800 CANXP27824 592 aaKnown RBP23.4■■□□□ 1.34
COL9A3-212ENST00000481800 HEG1Q9ULI3 1381 aa23.4■■□□□ 1.34
COL9A3-212ENST00000481800 ZEB1P37275 1124 aaPredicted RBP23.39■■□□□ 1.33
COL9A3-212ENST00000481800 CICQ96RK0 1608 aaPredicted RBP23.39■■□□□ 1.33
COL9A3-212ENST00000481800 DCTN1Q14203 1278 aa23.38■■□□□ 1.33
COL9A3-212ENST00000481800 FKBP8Q14318 412 aa23.38■■□□□ 1.33
COL9A3-212ENST00000481800 MAPK8IP3Q9UPT6 1336 aa23.37■■□□□ 1.33
COL9A3-212ENST00000481800 USPL1Q5W0Q7 1092 aa23.37■■□□□ 1.33
COL9A3-212ENST00000481800 MYBBP1AQ9BQG0 1328 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms