RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PRPF40BQ6NWY9 871 aaKnown RBP16.08■□□□□ 0.17
USP42-206ENST00000479544 PDRG1Q9NUG6 133 aa16.08■□□□□ 0.16
USP42-206ENST00000479544 FAM135AQ9P2D6 1515 aa16.08■□□□□ 0.16
USP42-206ENST00000479544 WAPLQ7Z5K2 1190 aa16.08■□□□□ 0.16
USP42-206ENST00000479544 CPLX1O14810 134 aa16.07■□□□□ 0.16
USP42-206ENST00000479544 MCM5P33992 734 aa16.07■□□□□ 0.16
USP42-206ENST00000479544 ZFP91Q96JP5 570 aaPredicted RBP16.07■□□□□ 0.16
USP42-206ENST00000479544 POLR3GO15318 223 aaPredicted RBP16.07■□□□□ 0.16
USP42-206ENST00000479544 ATP2B1P20020 1258 aa16.07■□□□□ 0.16
USP42-206ENST00000479544 ME1P48163 572 aa16.07■□□□□ 0.16
USP42-206ENST00000479544 CCDC186Q7Z3E2 898 aa16.07■□□□□ 0.16
USP42-206ENST00000479544 PLEKHM2Q8IWE5 1019 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 NECAB1Q8N987 351 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 NME9Q86XW9 330 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 LMBRD1Q9NUN5 540 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 HDGFL1Q5TGJ6 251 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 NEUROD6Q96NK8 337 aa16.06■□□□□ 0.16
USP42-206ENST00000479544 ARGLU1Q9NWB6 273 aaPredicted RBP16.06■□□□□ 0.16
USP42-206ENST00000479544 DNMT1P26358 1616 aaKnown RBP16.06■□□□□ 0.16
USP42-206ENST00000479544 BCORL1Q5H9F3 1711 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 ZMYM3Q14202 1370 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 DNAJC2Q99543 621 aaKnown RBP16.05■□□□□ 0.16
USP42-206ENST00000479544 PDCP20941 246 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 GPS2Q13227 327 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 AEBP1Q8IUX7 1158 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 PHACTR3Q96KR7 559 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 ZMYM4Q5VZL5 1548 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 STX6O43752 255 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 CPA1P15085 419 aa16.05■□□□□ 0.16
USP42-206ENST00000479544 U2AF2P26368 475 aaKnown RBP eCLIP16.05■□□□□ 0.163e-6■■■□□ 15.4
USP42-206ENST00000479544 CCDC94Q9BW85 323 aaPredicted RBP16.05■□□□□ 0.16
USP42-206ENST00000479544 NCKAP5LQ9HCH0 1330 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 USP26Q9BXU7 913 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 TMX1Q9H3N1 280 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 TTC37Q6PGP7 1564 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 GADD45BO75293 160 aaPredicted RBP16.04■□□□□ 0.16
USP42-206ENST00000479544 PTPN14Q15678 1187 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 GUCY1B3Q02153 619 aa16.04■□□□□ 0.16
USP42-206ENST00000479544 BLMP54132 1417 aaPredicted RBP16.04■□□□□ 0.16
USP42-206ENST00000479544 CCDC30Q5VVM6 783 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 CLIP2Q9UDT6 1046 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 LRRFIP2Q9Y608 721 aaKnown RBP16.03■□□□□ 0.16
USP42-206ENST00000479544 ASXL1Q8IXJ9 1541 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 NOS1P29475 1434 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 CCT4P50991 539 aaKnown RBP16.03■□□□□ 0.16
USP42-206ENST00000479544 DNM1Q05193 864 aaKnown RBP16.03■□□□□ 0.16
USP42-206ENST00000479544 JARID2Q92833 1246 aaPredicted RBP16.03■□□□□ 0.16
USP42-206ENST00000479544 PRIMPOLQ96LW4 560 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 MLH3Q9UHC1 1453 aa16.03■□□□□ 0.16
USP42-206ENST00000479544 IDI1Q13907 227 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 BLOC1S2Q6QNY1 142 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 SLC52A1Q9NWF4 448 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 MYO5CQ9NQX4 1742 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 ZBTB7BO15156 539 aaPredicted RBP16.02■□□□□ 0.16
USP42-206ENST00000479544 TAF7LQ5H9L4 462 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 SYCP2Q9BX26 1530 aa16.02■□□□□ 0.16
USP42-206ENST00000479544 PTGS1P23219 599 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 SYNE3Q6ZMZ3 975 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 VAMP4O75379 141 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 CSB-PGBD3P0DP91 1061 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 GJB2P29033 226 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 PDE1AP54750 535 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 FAM173BQ6P4H8 233 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 CHMP4AQ9BY43 222 aa16.02■□□□□ 0.15
USP42-206ENST00000479544 ADAMTSL3P82987 1691 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 GTF2F1P35269 517 aaKnown RBP eCLIP16.01■□□□□ 0.15
USP42-206ENST00000479544 ZNF521Q96K83 1311 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 FYB1O15117 783 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 APPP05067 770 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 PSMA5P28066 241 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 ZNF165P49910 485 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 RASSF8Q8NHQ8 419 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 C14orf93Q9H972 538 aaKnown RBP16.01■□□□□ 0.15
USP42-206ENST00000479544 RPGRIP1LQ68CZ1 1315 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 LIMCH1Q9UPQ0 1083 aa16.01■□□□□ 0.15
USP42-206ENST00000479544 RAB11FIP3O75154 756 aa16■□□□□ 0.15
USP42-206ENST00000479544 PLCD3Q8N3E9 789 aa16■□□□□ 0.15
USP42-206ENST00000479544 MRPL50Q8N5N7 158 aaKnown RBP16■□□□□ 0.15
USP42-206ENST00000479544 A2MP01023 1474 aa16■□□□□ 0.15
USP42-206ENST00000479544 ARHGEF12Q9NZN5 1544 aa16■□□□□ 0.15
USP42-206ENST00000479544 NLRP6P59044 892 aa16■□□□□ 0.15
USP42-206ENST00000479544 HDAC5Q9UQL6 1122 aa16■□□□□ 0.15
USP42-206ENST00000479544 VGLL3A8MV65 326 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 BRPF1P55201 1214 aaPredicted RBP15.99■□□□□ 0.15
USP42-206ENST00000479544 ZNF445P59923 1031 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 AACSQ86V21 672 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 SRCIN1Q9C0H9 1055 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 SETD1BQ9UPS6 1966 aaKnown RBP15.99■□□□□ 0.15
USP42-206ENST00000479544 HS1BP3Q53T59 392 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 HSP90AB4PQ58FF6 505 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 ISM2Q6H9L7 571 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 UBE2HP62256 183 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 BIN1O00499 593 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 STK38Q15208 465 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 GPT2Q8TD30 523 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 NAT10Q9H0A0 1025 aaKnown RBP15.99■□□□□ 0.15
USP42-206ENST00000479544 ZRANB1Q9UGI0 708 aa15.99■□□□□ 0.15
USP42-206ENST00000479544 PDE4CQ08493 712 aa15.98■□□□□ 0.15
USP42-206ENST00000479544 TRMT2AQ8IZ69 625 aaKnown RBP15.98■□□□□ 0.15
USP42-206ENST00000479544 UBXN4Q92575 508 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms