RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 NFATC2IPQ8NCF5 419 aa30.45■■■□□ 2.47
TRAF4-211ENST00000478021 RSPH6AQ9H0K4 717 aa30.45■■■□□ 2.47
TRAF4-211ENST00000478021 RNMTO43148 476 aaKnown RBP30.43■■■□□ 2.46
TRAF4-211ENST00000478021 RBM42Q9BTD8 480 aaKnown RBP30.42■■■□□ 2.46
TRAF4-211ENST00000478021 ADAMTS7Q9UKP4 1686 aa30.42■■■□□ 2.46
TRAF4-211ENST00000478021 ATP6V1AP38606 617 aa30.41■■■□□ 2.46
TRAF4-211ENST00000478021 RALBP1Q15311 655 aa30.41■■■□□ 2.46
TRAF4-211ENST00000478021 PHACTR3Q96KR7 559 aa30.41■■■□□ 2.46
TRAF4-211ENST00000478021 MTFR1LQ9H019 292 aa30.41■■■□□ 2.46
TRAF4-211ENST00000478021 PPP1R1BQ9UD71 204 aaPredicted RBP30.41■■■□□ 2.46
TRAF4-211ENST00000478021 ITPK1Q13572 414 aa30.4■■■□□ 2.46
TRAF4-211ENST00000478021 LINC00116Q8NCU8 138 aa30.4■■■□□ 2.46
TRAF4-211ENST00000478021 GAS2L2Q8NHY3 880 aa30.4■■■□□ 2.46
TRAF4-211ENST00000478021 MRC1P22897 1456 aa30.39■■■□□ 2.46
TRAF4-211ENST00000478021 SLC52A2Q9HAB3 445 aa30.39■■■□□ 2.46
TRAF4-211ENST00000478021 MAP3K5Q99683 1374 aa30.39■■■□□ 2.45
TRAF4-211ENST00000478021 PTGER2P43116 358 aa30.38■■■□□ 2.45
TRAF4-211ENST00000478021 AK7Q96M32 723 aa30.38■■■□□ 2.45
TRAF4-211ENST00000478021 UBR3Q6ZT12 1888 aa30.38■■■□□ 2.45
TRAF4-211ENST00000478021 MSH5O43196 834 aa30.37■■■□□ 2.45
TRAF4-211ENST00000478021 SLC4A9Q96Q91 983 aa30.37■■■□□ 2.45
TRAF4-211ENST00000478021 COL23A1Q86Y22 540 aaPredicted RBP30.36■■■□□ 2.45
TRAF4-211ENST00000478021 ZNF831Q5JPB2 1677 aa30.36■■■□□ 2.45
TRAF4-211ENST00000478021 GNAT3A8MTJ3 354 aa30.35■■■□□ 2.45
TRAF4-211ENST00000478021 PTCD1O75127 700 aaKnown RBP30.35■■■□□ 2.45
TRAF4-211ENST00000478021 FCHSD2O94868 740 aa30.35■■■□□ 2.45
TRAF4-211ENST00000478021 HMGB2P26583 209 aaKnown RBP30.35■■■□□ 2.45
TRAF4-211ENST00000478021 SMIM5Q71RC9 77 aa30.34■■■□□ 2.45
TRAF4-211ENST00000478021 COL5A3P25940 1745 aaPredicted RBP30.33■■■□□ 2.45
TRAF4-211ENST00000478021 MYBBP1AQ9BQG0 1328 aaKnown RBP30.33■■■□□ 2.45
TRAF4-211ENST00000478021 AMIGO3Q86WK7 504 aa30.33■■■□□ 2.45
TRAF4-211ENST00000478021 PHF14O94880 888 aa30.32■■■□□ 2.44
TRAF4-211ENST00000478021 SLC16A10Q8TF71 515 aa30.32■■■□□ 2.44
TRAF4-211ENST00000478021 SGIP1Q9BQI5 828 aa30.32■■■□□ 2.44
TRAF4-211ENST00000478021 SLC39A6Q13433 755 aa30.31■■■□□ 2.44
TRAF4-211ENST00000478021 IL17REQ8NFR9 667 aa30.31■■■□□ 2.44
TRAF4-211ENST00000478021 TJP1Q07157 1748 aa30.3■■■□□ 2.44
TRAF4-211ENST00000478021 COL24A1Q17RW2 1714 aa30.3■■■□□ 2.44
TRAF4-211ENST00000478021 SIPA1L3O60292 1781 aaPredicted RBP30.29■■■□□ 2.44
TRAF4-211ENST00000478021 GNPATO15228 680 aa30.29■■■□□ 2.44
TRAF4-211ENST00000478021 FLAD1Q8NFF5 587 aa30.27■■■□□ 2.44
TRAF4-211ENST00000478021 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.26■■■□□ 2.43
TRAF4-211ENST00000478021 ZNF316A6NFI3 1004 aaPredicted RBP30.26■■■□□ 2.43
TRAF4-211ENST00000478021 TEFQ10587 303 aa30.26■■■□□ 2.43
TRAF4-211ENST00000478021 MSL1Q68DK7 614 aa30.26■■■□□ 2.43
TRAF4-211ENST00000478021 PRKRIP1Q9H875 184 aaPredicted RBP30.25■■■□□ 2.43
TRAF4-211ENST00000478021 KCPQ6ZWJ8 1503 aa30.25■■■□□ 2.43
TRAF4-211ENST00000478021 CICQ96RK0 1608 aaPredicted RBP30.25■■■□□ 2.43
TRAF4-211ENST00000478021 MYH14Q7Z406 1995 aaKnown RBP30.24■■■□□ 2.43
TRAF4-211ENST00000478021 DLG5Q8TDM6 1919 aa30.24■■■□□ 2.43
TRAF4-211ENST00000478021 UBR2Q8IWV8 1755 aa30.24■■■□□ 2.43
TRAF4-211ENST00000478021 SSFA2P28290 1259 aa30.23■■■□□ 2.43
TRAF4-211ENST00000478021 ARXQ96QS3 562 aa30.23■■■□□ 2.43
TRAF4-211ENST00000478021 CEMIPQ8WUJ3 1361 aa30.23■■■□□ 2.43
TRAF4-211ENST00000478021 NEFMP07197 916 aa30.22■■■□□ 2.43
TRAF4-211ENST00000478021 POLD1P28340 1107 aa30.22■■■□□ 2.43
TRAF4-211ENST00000478021 PLEKHF1Q96S99 279 aa30.22■■■□□ 2.43
TRAF4-211ENST00000478021 CNTNAP4Q9C0A0 1308 aa30.22■■■□□ 2.43
TRAF4-211ENST00000478021 MCM10Q7L590 875 aa30.21■■■□□ 2.43
TRAF4-211ENST00000478021 RTF1Q92541 710 aaKnown RBP30.21■■■□□ 2.43
TRAF4-211ENST00000478021 DCTN1Q14203 1278 aa30.2■■■□□ 2.43
TRAF4-211ENST00000478021 DNAJC10Q8IXB1 793 aa30.2■■■□□ 2.43
TRAF4-211ENST00000478021 FHDC1Q9C0D6 1143 aaPredicted RBP30.2■■■□□ 2.43
TRAF4-211ENST00000478021 CRKLP46109 303 aaKnown RBP30.19■■■□□ 2.42
TRAF4-211ENST00000478021 RC3H1Q5TC82 1133 aaKnown RBP30.19■■■□□ 2.42
TRAF4-211ENST00000478021 TTC5Q8N0Z6 440 aa30.19■■■□□ 2.42
TRAF4-211ENST00000478021 RTCBQ9Y3I0 505 aaKnown RBP30.19■■■□□ 2.42
TRAF4-211ENST00000478021 KLHL34Q8N239 644 aa30.17■■■□□ 2.42
TRAF4-211ENST00000478021 MAPK8IP3Q9UPT6 1336 aa30.17■■■□□ 2.42
TRAF4-211ENST00000478021 RPS6KA4O75676 772 aa30.15■■■□□ 2.42
TRAF4-211ENST00000478021 PNNQ9H307 717 aaKnown RBP30.15■■■□□ 2.42
TRAF4-211ENST00000478021 C4AP0C0L4 1744 aa30.15■■■□□ 2.42
TRAF4-211ENST00000478021 TRAPPC3LQ5T215 181 aa30.14■■■□□ 2.42
TRAF4-211ENST00000478021 ZNF790Q6PG37 636 aa30.14■■■□□ 2.42
TRAF4-211ENST00000478021 SYT17Q9BSW7 474 aa30.14■■■□□ 2.42
TRAF4-211ENST00000478021 BTBD11A6QL63 1104 aa30.13■■■□□ 2.41
TRAF4-211ENST00000478021 NFE2L2Q16236 605 aa30.13■■■□□ 2.41
TRAF4-211ENST00000478021 KCNQ3O43525 872 aa30.12■■■□□ 2.41
TRAF4-211ENST00000478021 HTATSF1O43719 755 aaKnown RBP30.12■■■□□ 2.41
TRAF4-211ENST00000478021 ARHGEF1Q92888 912 aaKnown RBP30.12■■■□□ 2.41
TRAF4-211ENST00000478021 ZNF496Q96IT1 587 aaPredicted RBP30.12■■■□□ 2.41
TRAF4-211ENST00000478021 CYP19A1P11511 503 aaPredicted RBP30.11■■■□□ 2.41
TRAF4-211ENST00000478021 INTS5Q6P9B9 1019 aaKnown RBP30.11■■■□□ 2.41
TRAF4-211ENST00000478021 WDR43Q15061 677 aaKnown RBP eCLIP30.1■■■□□ 2.41
TRAF4-211ENST00000478021 VSIG10Q8N0Z9 540 aa30.1■■■□□ 2.41
TRAF4-211ENST00000478021 CCDC87Q9NVE4 849 aa30.1■■■□□ 2.41
TRAF4-211ENST00000478021 ADRA2BP18089 450 aa30.09■■■□□ 2.41
TRAF4-211ENST00000478021 CCDC146Q8IYE0 955 aa30.09■■■□□ 2.41
TRAF4-211ENST00000478021 HEG1Q9ULI3 1381 aa30.09■■■□□ 2.41
TRAF4-211ENST00000478021 RFC4P35249 363 aa30.07■■■□□ 2.4
TRAF4-211ENST00000478021 FMNL2Q96PY5 1086 aa30.06■■■□□ 2.4
TRAF4-211ENST00000478021 THUMPD2Q9BTF0 503 aaKnown RBP30.06■■■□□ 2.4
TRAF4-211ENST00000478021 ZBTB1Q9Y2K1 713 aa30.05■■■□□ 2.4
TRAF4-211ENST00000478021 SRP68Q9UHB9 627 aaKnown RBP30.04■■■□□ 2.4
TRAF4-211ENST00000478021 SOS1Q07889 1333 aaPredicted RBP30.03■■■□□ 2.4
TRAF4-211ENST00000478021 MIS18AQ9NYP9 233 aa30.03■■■□□ 2.4
TRAF4-211ENST00000478021 ADAMTS8Q9UP79 889 aa30.03■■■□□ 2.4
TRAF4-211ENST00000478021 GYS1P13807 737 aa30.02■■■□□ 2.4
TRAF4-211ENST00000478021 TAF7Q15545 349 aaPredicted RBP30.02■■■□□ 2.4
TRAF4-211ENST00000478021 NLGN2Q8NFZ4 835 aa30.02■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms