RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 SOS1Q07889 1333 aaPredicted RBP13.76□□□□□ -0.21
HLA-DMB-260ENST00000477537 CEMIPQ8WUJ3 1361 aa13.75□□□□□ -0.21
HLA-DMB-260ENST00000477537 FLIIQ13045 1269 aa13.75□□□□□ -0.21
HLA-DMB-260ENST00000477537 BRINP3Q76B58 766 aa13.75□□□□□ -0.21
HLA-DMB-260ENST00000477537 NFKBIBQ15653 356 aa13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 LMO7Q8WWI1 1683 aa13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 FKBP5Q13451 457 aaPredicted RBP13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 PLEKHO1Q53GL0 409 aaPredicted RBP13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 ZNF530Q6P9A1 599 aaPredicted RBP13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 ANKRD24Q8TF21 1146 aa13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 TBC1D2Q9BYX2 928 aa13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 LGR6Q9HBX8 967 aa13.74□□□□□ -0.21
HLA-DMB-260ENST00000477537 MED1Q15648 1581 aaPredicted RBP13.73□□□□□ -0.21
HLA-DMB-260ENST00000477537 PIP4K2BP78356 416 aa13.73□□□□□ -0.21
HLA-DMB-260ENST00000477537 PLEKHM2Q8IWE5 1019 aa13.73□□□□□ -0.21
HLA-DMB-260ENST00000477537 CERKQ8TCT0 537 aa13.73□□□□□ -0.21
HLA-DMB-260ENST00000477537 BCL11AQ9H165 835 aa13.73□□□□□ -0.21
HLA-DMB-260ENST00000477537 AKAP4Q5JQC9 854 aa13.72□□□□□ -0.21
HLA-DMB-260ENST00000477537 ROBO1Q9Y6N7 1651 aa13.72□□□□□ -0.21
HLA-DMB-260ENST00000477537 HMMRO75330 724 aa13.72□□□□□ -0.21
HLA-DMB-260ENST00000477537 HDGFL1Q5TGJ6 251 aa13.72□□□□□ -0.21
HLA-DMB-260ENST00000477537 KDM3BQ7LBC6 1761 aa13.72□□□□□ -0.21
HLA-DMB-260ENST00000477537 RGPD5Q99666 1765 aa13.71□□□□□ -0.21
HLA-DMB-260ENST00000477537 UBAP1LF5GYI3 381 aa13.71□□□□□ -0.21
HLA-DMB-260ENST00000477537 AMOTQ4VCS5 1084 aa13.71□□□□□ -0.21
HLA-DMB-260ENST00000477537 C16orf71Q8IYS4 520 aaPredicted RBP13.71□□□□□ -0.21
HLA-DMB-260ENST00000477537 NCAPD2Q15021 1401 aa13.71□□□□□ -0.22
HLA-DMB-260ENST00000477537 N4BP2Q86UW6 1770 aaPredicted RBP13.71□□□□□ -0.22
HLA-DMB-260ENST00000477537 APBB1O00213 710 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 SMARCA5O60264 1052 aaPredicted RBP13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 GNAI2P04899 355 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 EIF4A1P60842 406 aaKnown RBP13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 TEFQ10587 303 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 MPRIPQ6WCQ1 1025 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 TBC1D9Q6ZT07 1266 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 SLKQ9H2G2 1235 aaPredicted RBP13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 AXIN2Q9Y2T1 843 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 ALS2Q96Q42 1657 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 GSPT1P15170 499 aaKnown RBP13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 C1orf141Q5JVX7 400 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 TTC22Q5TAA0 569 aa13.7□□□□□ -0.22
HLA-DMB-260ENST00000477537 PXDNQ92626 1479 aa13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 CAMTA1Q9Y6Y1 1673 aa13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 KCNQ3O43525 872 aa13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 CDC45O75419 566 aa13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 EIF2S2P20042 333 aaKnown RBP13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 RBM25P49756 843 aaKnown RBP13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 OTUD7AQ8TE49 926 aaPredicted RBP13.69□□□□□ -0.22
HLA-DMB-260ENST00000477537 BTBD11A6QL63 1104 aa13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 RNMTO43148 476 aaKnown RBP13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 GNAI3P08754 354 aa13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 ZC3H6P61129 1189 aaKnown RBP13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 PHAXQ9H814 394 aaKnown RBP13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 PXDNLA1KZ92 1463 aa13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 TOM1O60784 492 aa13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 HOXB7P09629 217 aa13.68□□□□□ -0.22
HLA-DMB-260ENST00000477537 FRAT2O75474 233 aaPredicted RBP13.67□□□□□ -0.22
HLA-DMB-260ENST00000477537 ANTXR1Q9H6X2 564 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 NPHP3Q7Z494 1330 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 HSCBQ8IWL3 235 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 SPRYD3Q8NCJ5 442 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 CHPF2Q9P2E5 772 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 NHSL1Q5SYE7 1610 aa13.66□□□□□ -0.22
HLA-DMB-260ENST00000477537 OVOS2A0A0G2JMS6 1433 aa13.65□□□□□ -0.22
HLA-DMB-260ENST00000477537 ERBB3P21860 1342 aa13.65□□□□□ -0.22
HLA-DMB-260ENST00000477537 ATP8B2P98198 1209 aa13.65□□□□□ -0.22
HLA-DMB-260ENST00000477537 CHMP4AQ9BY43 222 aa13.65□□□□□ -0.22
HLA-DMB-260ENST00000477537 LRRFIP2Q9Y608 721 aaKnown RBP13.65□□□□□ -0.22
HLA-DMB-260ENST00000477537 USP44Q9H0E7 712 aa13.64□□□□□ -0.23
HLA-DMB-260ENST00000477537 EXOC6BQ9Y2D4 811 aa13.64□□□□□ -0.23
HLA-DMB-260ENST00000477537 PNMA6EA0A0J9YXQ4 647 aa13.64□□□□□ -0.23
HLA-DMB-260ENST00000477537 UBTFL1P0CB47 393 aaPredicted RBP13.64□□□□□ -0.23
HLA-DMB-260ENST00000477537 EIF5BO60841 1220 aaKnown RBP13.63□□□□□ -0.23
HLA-DMB-260ENST00000477537 SDSP20132 328 aa13.63□□□□□ -0.23
HLA-DMB-260ENST00000477537 SRCIN1Q9C0H9 1055 aa13.63□□□□□ -0.23
HLA-DMB-260ENST00000477537 NLRP2Q9NX02 1062 aa13.63□□□□□ -0.23
HLA-DMB-260ENST00000477537 SIPA1L3O60292 1781 aaPredicted RBP13.63□□□□□ -0.23
HLA-DMB-260ENST00000477537 ANXA1P04083 346 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 SNX21Q969T3 373 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 KIF2CQ99661 725 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 SOS2Q07890 1332 aaPredicted RBP13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 CABLES1Q8TDN4 633 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 DNAAF4Q8WXU2 420 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 RAPGEF4Q8WZA2 1011 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 COL18A1P39060 1754 aa13.62□□□□□ -0.23
HLA-DMB-260ENST00000477537 TNS3Q68CZ2 1445 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 PI4KAP2A4QPH2 592 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 PI4KAP1Q8N8J0 262 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 LRRCC1Q9C099 1032 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 PHLPP1O60346 1717 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 ADAMTS7Q9UKP4 1686 aa13.61□□□□□ -0.23
HLA-DMB-260ENST00000477537 GIGYF1O75420 1035 aaPredicted RBP13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 PDE1AP54750 535 aa13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 CASC1Q6TDU7 716 aa13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 OSBPL3Q9H4L5 887 aa13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 IBTKQ9P2D0 1353 aaPredicted RBP13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 SPATA31A3Q5VYP0 1347 aa13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 CRYBG1Q9Y4K1 1723 aa13.6□□□□□ -0.23
HLA-DMB-260ENST00000477537 CSB-PGBD3P0DP91 1061 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms