RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RALYLQ86SE5 291 aaKnown RBP17.53■□□□□ 0.4
HDAC6-220ENST00000477528 ABCC3O15438 1527 aa17.52■□□□□ 0.4
HDAC6-220ENST00000477528 KIF6Q6ZMV9 814 aa17.52■□□□□ 0.4
HDAC6-220ENST00000477528 RNF214Q8ND24 703 aa17.52■□□□□ 0.4
HDAC6-220ENST00000477528 ZSCAN31Q96LW9 406 aaPredicted RBP17.52■□□□□ 0.4
HDAC6-220ENST00000477528 MAP3K19Q56UN5 1328 aa17.52■□□□□ 0.4
HDAC6-220ENST00000477528 MADDQ8WXG6 1647 aa17.52■□□□□ 0.4
HDAC6-220ENST00000477528 SNX21Q969T3 373 aa17.52■□□□□ 0.39
HDAC6-220ENST00000477528 TSPY26PQ9H489 355 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 SDSP20132 328 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 STRN4Q9NRL3 753 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 KRT24Q2M2I5 525 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 EYA1Q99502 592 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 PDRG1Q9NUG6 133 aa17.51■□□□□ 0.39
HDAC6-220ENST00000477528 JAKMIP1Q96N16 626 aaKnown RBP17.51■□□□□ 0.39
HDAC6-220ENST00000477528 FIBPO43427 364 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 TRIM29Q14134 588 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 CEP85Q6P2H3 762 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 LAMC1P11047 1609 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 SASS6Q6UVJ0 657 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-220ENST00000477528 UPF3BQ9BZI7 483 aaKnown RBP17.5■□□□□ 0.39
HDAC6-220ENST00000477528 PI4KAP2A4QPH2 592 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 SSFA2P28290 1259 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 BLOC1S2Q6QNY1 142 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 KRT28Q7Z3Y7 464 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 PPP1R42Q7Z4L9 355 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 PI4KAP1Q8N8J0 262 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 PLEKHF1Q96S99 279 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 CCDC39Q9UFE4 941 aa17.5■□□□□ 0.39
HDAC6-220ENST00000477528 CCDC73Q6ZRK6 1079 aa17.49■□□□□ 0.39
HDAC6-220ENST00000477528 DDX54Q8TDD1 881 aaKnown RBP17.49■□□□□ 0.39
HDAC6-220ENST00000477528 TMEM2Q9UHN6 1383 aa17.49■□□□□ 0.39
HDAC6-220ENST00000477528 PDE1AP54750 535 aa17.49■□□□□ 0.39
HDAC6-220ENST00000477528 AKAP17AQ02040 695 aaKnown RBP17.49■□□□□ 0.39
HDAC6-220ENST00000477528 RNF17Q9BXT8 1623 aaKnown RBP17.48■□□□□ 0.39
HDAC6-220ENST00000477528 CCDC158Q5M9N0 1113 aa17.48■□□□□ 0.39
HDAC6-220ENST00000477528 CLASP1Q7Z460 1538 aa17.48■□□□□ 0.39
HDAC6-220ENST00000477528 ANKRD24Q8TF21 1146 aa17.48■□□□□ 0.39
HDAC6-220ENST00000477528 E9PCH4 1651 aa17.48■□□□□ 0.39
HDAC6-220ENST00000477528 ATP8B2P98198 1209 aa17.48■□□□□ 0.39
HDAC6-220ENST00000477528 RBM42Q9BTD8 480 aaKnown RBP17.48■□□□□ 0.39
HDAC6-220ENST00000477528 CHL1O00533 1208 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 SBNO1A3KN83 1393 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 MAP3K2Q9Y2U5 619 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 SOS1Q07889 1333 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-220ENST00000477528 PLEKHG3A1L390 1219 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 CASTP20810 708 aaKnown RBP17.47■□□□□ 0.39
HDAC6-220ENST00000477528 KRT32Q14532 448 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 ARHGAP31Q2M1Z3 1444 aa17.47■□□□□ 0.39
HDAC6-220ENST00000477528 PDIA4P13667 645 aaKnown RBP17.46■□□□□ 0.39
HDAC6-220ENST00000477528 NFXL1Q6ZNB6 911 aa17.46■□□□□ 0.39
HDAC6-220ENST00000477528 MAP3K5Q99683 1374 aa17.46■□□□□ 0.39
HDAC6-220ENST00000477528 PLEKHM2Q8IWE5 1019 aa17.46■□□□□ 0.39
HDAC6-220ENST00000477528 C16orf71Q8IYS4 520 aaPredicted RBP17.46■□□□□ 0.39
HDAC6-220ENST00000477528 POLR1AO95602 1720 aaPredicted RBP17.46■□□□□ 0.39
HDAC6-220ENST00000477528 FOSBP53539 338 aa17.46■□□□□ 0.39
HDAC6-220ENST00000477528 MYD88Q99836 296 aa17.46■□□□□ 0.39
HDAC6-220ENST00000477528 KCNA6P17658 529 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 HOXC9P31274 260 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 LARP1BQ659C4 914 aaKnown RBP17.45■□□□□ 0.38
HDAC6-220ENST00000477528 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 TTC39AQ5SRH9 613 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 ECHDC1Q9NTX5 307 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 TSHZ3Q63HK5 1081 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 TBC1D2BQ9UPU7 963 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 CCDC57Q2TAC2 916 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 RHPN1Q8TCX5 695 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 CHPF2Q9P2E5 772 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 ABCA9Q8IUA7 1624 aa17.45■□□□□ 0.38
HDAC6-220ENST00000477528 ATP7BP35670 1465 aa17.44■□□□□ 0.38
HDAC6-220ENST00000477528 KRT85P78386 507 aa17.44■□□□□ 0.38
HDAC6-220ENST00000477528 PRPF40BQ6NWY9 871 aaKnown RBP17.44■□□□□ 0.38
HDAC6-220ENST00000477528 VPS37DQ86XT2 251 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 CEP126Q9P2H0 1117 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 FAM135BQ49AJ0 1406 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 HSP90AA2PQ14568 343 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-220ENST00000477528 ERICH2A1L162 156 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 IFNL2Q8IZJ0 200 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 AATKQ6ZMQ8 1374 aa17.43■□□□□ 0.38
HDAC6-220ENST00000477528 FMNL2Q96PY5 1086 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 MSH6P52701 1360 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 DHX16O60231 1041 aaKnown RBP17.42■□□□□ 0.38
HDAC6-220ENST00000477528 STK3Q13188 491 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 BOLA2Q9H3K6 86 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 BAG4O95429 457 aaKnown RBP17.42■□□□□ 0.38
HDAC6-220ENST00000477528 ANXA1P04083 346 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 RBM25P49756 843 aaKnown RBP17.42■□□□□ 0.38
HDAC6-220ENST00000477528 EVI5LQ96CN4 794 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 BABAM1Q9NWV8 329 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 CNNM1Q9NRU3 951 aa17.42■□□□□ 0.38
HDAC6-220ENST00000477528 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.41■□□□□ 0.382e-7■■■■□ 22.1
HDAC6-220ENST00000477528 RASSF8Q8NHQ8 419 aa17.41■□□□□ 0.38
HDAC6-220ENST00000477528 CCDC8Q9H0W5 538 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-220ENST00000477528 SH2B1Q9NRF2 756 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-220ENST00000477528 ALDH1L1O75891 902 aa17.41■□□□□ 0.38
HDAC6-220ENST00000477528 ESYT1Q9BSJ8 1104 aa17.41■□□□□ 0.38
HDAC6-220ENST00000477528 LIMCH1Q9UPQ0 1083 aa17.41■□□□□ 0.38
HDAC6-220ENST00000477528 IP6K1Q92551 441 aa17.41■□□□□ 0.38
HDAC6-220ENST00000477528 TMX4Q9H1E5 349 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms