RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 EIF4A2Q14240 407 aaKnown RBP8.61□□□□□ -1.03
LDB3-206ENST00000477489 NKX1-1Q15270 411 aaPredicted RBP8.61□□□□□ -1.03
LDB3-206ENST00000477489 CADPS2Q86UW7 1296 aa8.61□□□□□ -1.03
LDB3-206ENST00000477489 TMC2Q8TDI7 906 aa8.61□□□□□ -1.03
LDB3-206ENST00000477489 IFT57Q9NWB7 429 aa8.61□□□□□ -1.03
LDB3-206ENST00000477489 IGSF1Q8N6C5 1336 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 ALS2Q96Q42 1657 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 HTATSF1O43719 755 aaKnown RBP8.6□□□□□ -1.03
LDB3-206ENST00000477489 GNAI1P63096 354 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 IRX6P78412 446 aaPredicted RBP8.6□□□□□ -1.03
LDB3-206ENST00000477489 PSME1Q06323 249 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 RRS1Q15050 365 aaKnown RBP8.6□□□□□ -1.03
LDB3-206ENST00000477489 C14orf37Q86TY3 774 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 ABTB2Q8N961 1025 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 MSH6P52701 1360 aa8.6□□□□□ -1.03
LDB3-206ENST00000477489 FANCIQ9NVI1 1328 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 LRP6O75581 1613 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 NUTM2FA1L443 756 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 ATF3P18847 181 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 AMPHP49418 695 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 RARSP54136 660 aaKnown RBP8.59□□□□□ -1.03
LDB3-206ENST00000477489 NEUROD2Q15784 382 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 ALDH1L2Q3SY69 923 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 ESCO1Q5FWF5 840 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 ARSIQ5FYB1 569 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 KRTAP3-3Q9BYR6 98 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 KRTAP3-2Q9BYR7 98 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 TMEM94Q12767 1356 aa8.59□□□□□ -1.03
LDB3-206ENST00000477489 USP19O94966 1318 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 SOS1Q07889 1333 aaPredicted RBP8.58□□□□□ -1.04
LDB3-206ENST00000477489 NCAPD2Q15021 1401 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 ZNF853P0CG23 659 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 ZNF772Q68DY9 489 aaPredicted RBP8.58□□□□□ -1.04
LDB3-206ENST00000477489 GAS2L2Q8NHY3 880 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 RRP7AQ9Y3A4 280 aaKnown RBP8.58□□□□□ -1.04
LDB3-206ENST00000477489 FAM208AQ9UK61 1670 aaKnown RBP8.58□□□□□ -1.04
LDB3-206ENST00000477489 CAMTA1Q9Y6Y1 1673 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 JCADQ9P266 1359 aa8.58□□□□□ -1.04
LDB3-206ENST00000477489 NPHP3Q7Z494 1330 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 KIF16BQ96L93 1317 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 SENP3-EIF4A1A0A087X0R7 540 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 HOXC9P31274 260 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 HSP90AB2PQ58FF8 381 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 VARS2Q5ST30 1063 aaKnown RBP8.57□□□□□ -1.04
LDB3-206ENST00000477489 SPNS2Q8IVW8 549 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 IP6K1Q92551 441 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 CFAP44Q96MT7 982 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 CHMP4BQ9H444 224 aaKnown RBP8.57□□□□□ -1.04
LDB3-206ENST00000477489 RYDENQ9NUL5 291 aaKnown RBP8.57□□□□□ -1.04
LDB3-206ENST00000477489 BABAM1Q9NWV8 329 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 LRRC37A3O60309 1634 aa8.57□□□□□ -1.04
LDB3-206ENST00000477489 COL16A1Q07092 1604 aaPredicted RBP8.56□□□□□ -1.04
LDB3-206ENST00000477489 IPO8O15397 1037 aaKnown RBP8.56□□□□□ -1.04
LDB3-206ENST00000477489 HMOX1P09601 288 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 RXRBP28702 533 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 SULT6B1Q6IMI4 303 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 B4GALNT3Q6L9W6 998 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 EXOC6Q8TAG9 804 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 ARHGAP45Q92619 1136 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 KHSRPQ92945 711 aaKnown RBP eCLIP8.56□□□□□ -1.04
LDB3-206ENST00000477489 PHACTR3Q96KR7 559 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 KIAA0232Q92628 1395 aa8.56□□□□□ -1.04
LDB3-206ENST00000477489 SLC34A2O95436 690 aa8.55□□□□□ -1.04
LDB3-206ENST00000477489 CANXP27824 592 aaKnown RBP8.55□□□□□ -1.04
LDB3-206ENST00000477489 MEX3CQ5U5Q3 659 aaKnown RBP8.55□□□□□ -1.04
LDB3-206ENST00000477489 ZKSCAN2Q63HK3 967 aa8.55□□□□□ -1.04
LDB3-206ENST00000477489 CENPQQ7L2Z9 268 aaPredicted RBP8.55□□□□□ -1.04
LDB3-206ENST00000477489 CRBNQ96SW2 442 aa8.55□□□□□ -1.04
LDB3-206ENST00000477489 CHMP4AQ9BY43 222 aa8.55□□□□□ -1.04
LDB3-206ENST00000477489 CACNA1FO60840 1977 aa8.55□□□□□ -1.04
LDB3-206ENST00000477489 OVOS2A0A0G2JMS6 1433 aa8.54□□□□□ -1.04
LDB3-206ENST00000477489 TNS3Q68CZ2 1445 aa8.54□□□□□ -1.04
LDB3-206ENST00000477489 FBLN1P23142 703 aa8.54□□□□□ -1.04
LDB3-206ENST00000477489 EXOSC9Q06265 439 aaKnown RBP8.54□□□□□ -1.04
LDB3-206ENST00000477489 KRT28Q7Z3Y7 464 aa8.54□□□□□ -1.04
LDB3-206ENST00000477489 CRYBG1Q9Y4K1 1723 aa8.54□□□□□ -1.04
LDB3-206ENST00000477489 LMO7Q8WWI1 1683 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 PXDNQ92626 1479 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 TCERG1O14776 1098 aaKnown RBP8.53□□□□□ -1.04
LDB3-206ENST00000477489 PLIN1O60240 522 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 BCAR3O75815 825 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 GCP02774 474 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 ARHGEF25Q86VW2 580 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 ORAI2Q96SN7 254 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 EYA1Q99502 592 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 RGS12O14924 1447 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 KDM2BQ8NHM5 1336 aa8.53□□□□□ -1.04
LDB3-206ENST00000477489 CPDO75976 1380 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 CHL1O00533 1208 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 FOXO3O43524 673 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 MMRN1Q13201 1228 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 ATF7IPQ6VMQ6 1270 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 RTF1Q92541 710 aaKnown RBP8.52□□□□□ -1.05
LDB3-206ENST00000477489 GPHNQ9NQX3 736 aaPredicted RBP8.52□□□□□ -1.05
LDB3-206ENST00000477489 TSHZ2Q9NRE2 1034 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 SMC4Q9NTJ3 1288 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 DDX19BQ9UMR2 479 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 PCDHGA4Q9Y5G9 962 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 SPATA31A6Q5VVP1 1343 aa8.52□□□□□ -1.05
LDB3-206ENST00000477489 MAP3K5Q99683 1374 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms