RNA–Protein interactions for RNA: ENST00000475664.1

MCF2L2-209, Transcript of MCF.2 cell line derived transforming sequence-like 2, humanhuman

TSL 3

Gene MCF2L2, Length 460 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L2-209ENST00000475664 TEFQ10587 303 aa29.12■■■□□ 2.25
MCF2L2-209ENST00000475664 CCDC27Q2M243 656 aa29.12■■■□□ 2.25
MCF2L2-209ENST00000475664 UPF1Q92900 1129 aaKnown RBP eCLIP29.12■■■□□ 2.25
MCF2L2-209ENST00000475664 RGPD3A6NKT7 1758 aaPredicted RBP29.11■■■□□ 2.25
MCF2L2-209ENST00000475664 RGPD4Q7Z3J3 1758 aa29.11■■■□□ 2.25
MCF2L2-209ENST00000475664 CCDC125Q86Z20 511 aa29.1■■■□□ 2.25
MCF2L2-209ENST00000475664 NGEFQ8N5V2 710 aa29.1■■■□□ 2.25
MCF2L2-209ENST00000475664 LY75O60449 1722 aa29.08■■■□□ 2.25
MCF2L2-209ENST00000475664 APBA3O96018 575 aa29.07■■■□□ 2.24
MCF2L2-209ENST00000475664 WWC1Q8IX03 1113 aa29.07■■■□□ 2.24
MCF2L2-209ENST00000475664 KDM3BQ7LBC6 1761 aa29.06■■■□□ 2.24
MCF2L2-209ENST00000475664 SF3B2Q13435 895 aaKnown RBP29.06■■■□□ 2.24
MCF2L2-209ENST00000475664 SALL2Q9Y467 1007 aaPredicted RBP29.06■■■□□ 2.24
MCF2L2-209ENST00000475664 UBR2Q8IWV8 1755 aa29.06■■■□□ 2.24
MCF2L2-209ENST00000475664 TAF7Q15545 349 aaPredicted RBP29.05■■■□□ 2.24
MCF2L2-209ENST00000475664 ATG3Q9NT62 314 aa29.05■■■□□ 2.24
MCF2L2-209ENST00000475664 ASAP1Q9ULH1 1129 aa29.05■■■□□ 2.24
MCF2L2-209ENST00000475664 PALLDQ8WX93 1383 aa29.02■■■□□ 2.24
MCF2L2-209ENST00000475664 PLSCR1O15162 318 aa29.02■■■□□ 2.24
MCF2L2-209ENST00000475664 SMARCC1Q92922 1105 aaPredicted RBP29.02■■■□□ 2.24
MCF2L2-209ENST00000475664 ZNF521Q96K83 1311 aa29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 KCPQ6ZWJ8 1503 aa29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 BTBD11A6QL63 1104 aa29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 BAG6P46379 1132 aa29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 CALD1Q05682 793 aaKnown RBP29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 SLC39A6Q13433 755 aa29.01■■■□□ 2.23
MCF2L2-209ENST00000475664 DEFB132Q7Z7B7 95 aa28.99■■■□□ 2.23
MCF2L2-209ENST00000475664 RREB1Q92766 1687 aa28.99■■■□□ 2.23
MCF2L2-209ENST00000475664 ZNF790Q6PG37 636 aa28.98■■■□□ 2.23
MCF2L2-209ENST00000475664 BABAM1Q9NWV8 329 aa28.98■■■□□ 2.23
MCF2L2-209ENST00000475664 MIS18AQ9NYP9 233 aa28.98■■■□□ 2.23
MCF2L2-209ENST00000475664 ZNF831Q5JPB2 1677 aa28.98■■■□□ 2.23
MCF2L2-209ENST00000475664 HNRNPUQ00839 825 aaKnown RBP eCLIP28.97■■■□□ 2.23
MCF2L2-209ENST00000475664 EN1Q05925 392 aaPredicted RBP28.97■■■□□ 2.23
MCF2L2-209ENST00000475664 WDR63Q8IWG1 891 aa28.97■■■□□ 2.23
MCF2L2-209ENST00000475664 CAMKK2Q96RR4 588 aa28.97■■■□□ 2.23
MCF2L2-209ENST00000475664 IL16Q14005 1332 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 CICQ96RK0 1608 aaPredicted RBP28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 CHL1O00533 1208 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 KCNQ3O43525 872 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 ZNF853P0CG23 659 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 CFAP44Q96MT7 982 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 IFT57Q9NWB7 429 aa28.96■■■□□ 2.23
MCF2L2-209ENST00000475664 TTC5Q8N0Z6 440 aa28.95■■■□□ 2.22
MCF2L2-209ENST00000475664 TSPYL4Q9UJ04 414 aa28.94■■■□□ 2.22
MCF2L2-209ENST00000475664 SOCS7O14512 581 aa28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 GNAI1P63096 354 aa28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 EZH2Q15910 746 aaKnown RBP28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 TXNRD1Q16881 649 aa28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 PROM2Q8N271 834 aa28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 LAS1LQ9Y4W2 734 aaKnown RBP28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 TJP1Q07157 1748 aa28.93■■■□□ 2.22
MCF2L2-209ENST00000475664 TAF1LQ8IZX4 1826 aa28.92■■■□□ 2.22
MCF2L2-209ENST00000475664 NUP188Q5SRE5 1749 aa28.92■■■□□ 2.22
MCF2L2-209ENST00000475664 LOC102724428A0A0B4J2F2 783 aa28.92■■■□□ 2.22
MCF2L2-209ENST00000475664 PTCD1O75127 700 aaKnown RBP28.92■■■□□ 2.22
MCF2L2-209ENST00000475664 SIK1P57059 783 aa28.92■■■□□ 2.22
MCF2L2-209ENST00000475664 ZNF496Q96IT1 587 aaPredicted RBP28.91■■■□□ 2.22
MCF2L2-209ENST00000475664 SLC4A9Q96Q91 983 aa28.91■■■□□ 2.22
MCF2L2-209ENST00000475664 RBM42Q9BTD8 480 aaKnown RBP28.91■■■□□ 2.22
MCF2L2-209ENST00000475664 C5P01031 1676 aa28.9■■■□□ 2.22
MCF2L2-209ENST00000475664 SLC27A3Q5K4L6 730 aa28.9■■■□□ 2.22
MCF2L2-209ENST00000475664 MBIPQ9NS73 344 aa28.9■■■□□ 2.22
MCF2L2-209ENST00000475664 COL5A3P25940 1745 aaPredicted RBP28.89■■■□□ 2.22
MCF2L2-209ENST00000475664 CCNL1Q9UK58 526 aaPredicted RBP28.89■■■□□ 2.22
MCF2L2-209ENST00000475664 HEG1Q9ULI3 1381 aa28.88■■■□□ 2.21
MCF2L2-209ENST00000475664 EIF4A1P60842 406 aaKnown RBP28.88■■■□□ 2.21
MCF2L2-209ENST00000475664 FMNL2Q96PY5 1086 aa28.88■■■□□ 2.21
MCF2L2-209ENST00000475664 LRRC4BQ9NT99 713 aa28.88■■■□□ 2.21
MCF2L2-209ENST00000475664 SPINK5Q9NQ38 1064 aaPredicted RBP28.87■■■□□ 2.21
MCF2L2-209ENST00000475664 KCNQ4P56696 695 aa28.86■■■□□ 2.21
MCF2L2-209ENST00000475664 GOLGA2Q08379 1002 aa28.86■■■□□ 2.21
MCF2L2-209ENST00000475664 VSIG10Q8N0Z9 540 aa28.86■■■□□ 2.21
MCF2L2-209ENST00000475664 ZBED9Q6R2W3 1325 aa28.86■■■□□ 2.21
MCF2L2-209ENST00000475664 ATP6V1AP38606 617 aa28.85■■■□□ 2.21
MCF2L2-209ENST00000475664 ITPK1Q13572 414 aa28.85■■■□□ 2.21
MCF2L2-209ENST00000475664 LAMB4A4D0S4 1761 aa28.85■■■□□ 2.21
MCF2L2-209ENST00000475664 TSR2Q969E8 191 aaKnown RBP28.84■■■□□ 2.21
MCF2L2-209ENST00000475664 FANCIQ9NVI1 1328 aa28.83■■■□□ 2.21
MCF2L2-209ENST00000475664 C4BP0C0L5 1744 aa28.82■■■□□ 2.2
MCF2L2-209ENST00000475664 DNAJC10Q8IXB1 793 aa28.81■■■□□ 2.2
MCF2L2-209ENST00000475664 MYH16Q9H6N6 1097 aa28.81■■■□□ 2.2
MCF2L2-209ENST00000475664 E9PSI1 815 aa28.8■■■□□ 2.2
MCF2L2-209ENST00000475664 SNRPA1P09661 255 aaKnown RBP28.8■■■□□ 2.2
MCF2L2-209ENST00000475664 SLFN5Q08AF3 891 aa28.8■■■□□ 2.2
MCF2L2-209ENST00000475664 LINC00116Q8NCU8 138 aa28.8■■■□□ 2.2
MCF2L2-209ENST00000475664 CDCA7LQ96GN5 454 aa28.8■■■□□ 2.2
MCF2L2-209ENST00000475664 GIGYF1O75420 1035 aaPredicted RBP28.79■■■□□ 2.2
MCF2L2-209ENST00000475664 KRT24Q2M2I5 525 aa28.79■■■□□ 2.2
MCF2L2-209ENST00000475664 PRAMEF22A3QJZ6 481 aa28.78■■■□□ 2.2
MCF2L2-209ENST00000475664 MYH14Q7Z406 1995 aaKnown RBP28.78■■■□□ 2.2
MCF2L2-209ENST00000475664 TEX13AQ9BXU3 409 aaPredicted RBP28.77■■■□□ 2.2
MCF2L2-209ENST00000475664 HMGB2P26583 209 aaKnown RBP28.76■■■□□ 2.19
MCF2L2-209ENST00000475664 TRMT2AQ8IZ69 625 aaKnown RBP28.76■■■□□ 2.19
MCF2L2-209ENST00000475664 CYP19A1P11511 503 aaPredicted RBP28.75■■■□□ 2.19
MCF2L2-209ENST00000475664 CNTNAP4Q9C0A0 1308 aa28.74■■■□□ 2.19
MCF2L2-209ENST00000475664 TUBGCP6Q96RT7 1819 aa28.74■■■□□ 2.19
MCF2L2-209ENST00000475664 C8orf58Q8NAV2 365 aa28.74■■■□□ 2.19
MCF2L2-209ENST00000475664 USP16Q9Y5T5 823 aa28.74■■■□□ 2.19
MCF2L2-209ENST00000475664 HOXB7P09629 217 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms