RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
COL12A1-206ENST00000474564 TSR2Q969E8 191 aaKnown RBP13.33□□□□□ -0.28
COL12A1-206ENST00000474564 GTF3C3Q9Y5Q9 886 aa13.33□□□□□ -0.28
COL12A1-206ENST00000474564 EXOSC9Q06265 439 aaKnown RBP13.32□□□□□ -0.28
COL12A1-206ENST00000474564 FAM196AQ6ZSG2 479 aa13.32□□□□□ -0.28
COL12A1-206ENST00000474564 KRT27Q7Z3Y8 459 aa13.32□□□□□ -0.28
COL12A1-206ENST00000474564 RCAN3Q9UKA8 241 aa13.32□□□□□ -0.28
COL12A1-206ENST00000474564 DLG5Q8TDM6 1919 aa13.31□□□□□ -0.28
COL12A1-206ENST00000474564 MARCH10Q8NA82 808 aaPredicted RBP13.31□□□□□ -0.28
COL12A1-206ENST00000474564 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
COL12A1-206ENST00000474564 MIS18AQ9NYP9 233 aa13.31□□□□□ -0.28
COL12A1-206ENST00000474564 PRIM1P49642 420 aaKnown RBP13.3□□□□□ -0.28
COL12A1-206ENST00000474564 TWISTNBQ3B726 338 aaPredicted RBP13.3□□□□□ -0.28
COL12A1-206ENST00000474564 ZNF790Q6PG37 636 aa13.3□□□□□ -0.28
COL12A1-206ENST00000474564 SMARCC1Q92922 1105 aaPredicted RBP13.3□□□□□ -0.28
COL12A1-206ENST00000474564 FMNL2Q96PY5 1086 aa13.3□□□□□ -0.28
COL12A1-206ENST00000474564 HOXB7P09629 217 aa13.29□□□□□ -0.28
COL12A1-206ENST00000474564 CANXP27824 592 aaKnown RBP13.29□□□□□ -0.28
COL12A1-206ENST00000474564 STK31Q9BXU1 1019 aa13.29□□□□□ -0.28
COL12A1-206ENST00000474564 TEX13AQ9BXU3 409 aaPredicted RBP13.29□□□□□ -0.28
COL12A1-206ENST00000474564 KDM6AO15550 1401 aaPredicted RBP13.29□□□□□ -0.28
COL12A1-206ENST00000474564 GLI3P10071 1580 aa13.28□□□□□ -0.28
COL12A1-206ENST00000474564 WNK3Q9BYP7 1800 aa13.28□□□□□ -0.28
COL12A1-206ENST00000474564 CCDC30Q5VVM6 783 aa13.28□□□□□ -0.28
COL12A1-206ENST00000474564 ELL2O00472 640 aaPredicted RBP13.27□□□□□ -0.29
COL12A1-206ENST00000474564 IPO8O15397 1037 aaKnown RBP13.27□□□□□ -0.29
COL12A1-206ENST00000474564 SNRPA1P09661 255 aaKnown RBP13.27□□□□□ -0.29
COL12A1-206ENST00000474564 MS4A1P11836 297 aa13.27□□□□□ -0.29
COL12A1-206ENST00000474564 EIF4A1P60842 406 aaKnown RBP13.27□□□□□ -0.29
COL12A1-206ENST00000474564 ALDH1L2Q3SY69 923 aa13.27□□□□□ -0.29
COL12A1-206ENST00000474564 ACSBG1Q96GR2 724 aa13.27□□□□□ -0.29
COL12A1-206ENST00000474564 LRRC37A3O60309 1634 aa13.26□□□□□ -0.29
COL12A1-206ENST00000474564 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
COL12A1-206ENST00000474564 PIGBQ92521 554 aa13.26□□□□□ -0.29
COL12A1-206ENST00000474564 SCN11AQ9UI33 1791 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 VAMP4O75379 141 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 SLC39A6Q13433 755 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 POTEAQ6S8J7 498 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 C8orf58Q8NAV2 365 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 RBM42Q9BTD8 480 aaKnown RBP13.25□□□□□ -0.29
COL12A1-206ENST00000474564 SMC4Q9NTJ3 1288 aa13.25□□□□□ -0.29
COL12A1-206ENST00000474564 THSD7AQ9UPZ6 1657 aa13.24□□□□□ -0.29
COL12A1-206ENST00000474564 BCL9O00512 1426 aa13.24□□□□□ -0.29
COL12A1-206ENST00000474564 PTCD1O75127 700 aaKnown RBP13.24□□□□□ -0.29
COL12A1-206ENST00000474564 STARD3NLO95772 234 aa13.24□□□□□ -0.29
COL12A1-206ENST00000474564 HDGFL1Q5TGJ6 251 aa13.24□□□□□ -0.29
COL12A1-206ENST00000474564 VSIG10Q8N0Z9 540 aa13.24□□□□□ -0.29
COL12A1-206ENST00000474564 BCL11BQ9C0K0 894 aaPredicted RBP13.24□□□□□ -0.29
COL12A1-206ENST00000474564 MRC1P22897 1456 aa13.23□□□□□ -0.29
COL12A1-206ENST00000474564 KIF16BQ96L93 1317 aa13.23□□□□□ -0.29
COL12A1-206ENST00000474564 EIF2S2P20042 333 aaKnown RBP13.23□□□□□ -0.29
COL12A1-206ENST00000474564 RGS17Q9UGC6 210 aaPredicted RBP13.23□□□□□ -0.29
COL12A1-206ENST00000474564 SUPT16HQ9Y5B9 1047 aaKnown RBP13.23□□□□□ -0.29
COL12A1-206ENST00000474564 ADAMTS7Q9UKP4 1686 aa13.23□□□□□ -0.29
COL12A1-206ENST00000474564 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
COL12A1-206ENST00000474564 RARSP54136 660 aaKnown RBP13.22□□□□□ -0.29
COL12A1-206ENST00000474564 SF3B2Q13435 895 aaKnown RBP13.22□□□□□ -0.29
COL12A1-206ENST00000474564 ZNF496Q96IT1 587 aaPredicted RBP13.22□□□□□ -0.29
COL12A1-206ENST00000474564 ATG3Q9NT62 314 aa13.22□□□□□ -0.29
COL12A1-206ENST00000474564 ASAP1Q9ULH1 1129 aa13.22□□□□□ -0.29
COL12A1-206ENST00000474564 HEG1Q9ULI3 1381 aa13.21□□□□□ -0.29
COL12A1-206ENST00000474564 KCNQ3O43525 872 aa13.21□□□□□ -0.29
COL12A1-206ENST00000474564 TSPYL6Q8N831 410 aa13.21□□□□□ -0.29
COL12A1-206ENST00000474564 FRAT1Q92837 279 aaPredicted RBP13.21□□□□□ -0.29
COL12A1-206ENST00000474564 DBF4Q9UBU7 674 aaPredicted RBP13.21□□□□□ -0.29
COL12A1-206ENST00000474564 SHANK3Q9BYB0 1731 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 SLC4A2P04920 1241 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 FKBP8Q14318 412 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 FAM182BQ5T319 152 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 ZKSCAN2Q63HK3 967 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 HYPKQ9NX55 129 aa13.2□□□□□ -0.3
COL12A1-206ENST00000474564 ERBB4Q15303 1308 aa13.19□□□□□ -0.3
COL12A1-206ENST00000474564 KCNQ2O43526 872 aa13.19□□□□□ -0.3
COL12A1-206ENST00000474564 DDX58O95786 925 aaKnown RBP13.19□□□□□ -0.3
COL12A1-206ENST00000474564 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
COL12A1-206ENST00000474564 KRT24Q2M2I5 525 aa13.19□□□□□ -0.3
COL12A1-206ENST00000474564 SSH1Q8WYL5 1049 aa13.19□□□□□ -0.3
COL12A1-206ENST00000474564 API5Q9BZZ5 524 aaKnown RBP13.19□□□□□ -0.3
COL12A1-206ENST00000474564 CHMP4BQ9H444 224 aaKnown RBP13.19□□□□□ -0.3
COL12A1-206ENST00000474564 LOC102724428A0A0B4J2F2 783 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 TRIM37O94972 964 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 BRPF1P55201 1214 aaPredicted RBP13.18□□□□□ -0.3
COL12A1-206ENST00000474564 SIK1P57059 783 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 FTSJ3Q8IY81 847 aaKnown RBP13.18□□□□□ -0.3
COL12A1-206ENST00000474564 ARHGAP45Q92619 1136 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 NECTIN2Q92692 538 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 BCL2L13Q9BXK5 485 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 PALLDQ8WX93 1383 aa13.18□□□□□ -0.3
COL12A1-206ENST00000474564 KAT6BQ8WYB5 2073 aa13.17□□□□□ -0.3
COL12A1-206ENST00000474564 PTPRCP08575 1304 aa13.17□□□□□ -0.3
COL12A1-206ENST00000474564 BCAR3O75815 825 aa13.17□□□□□ -0.3
COL12A1-206ENST00000474564 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
COL12A1-206ENST00000474564 DDX21Q9NR30 783 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL12A1-206ENST00000474564 VIRMAQ69YN4 1812 aaKnown RBP13.17□□□□□ -0.3
COL12A1-206ENST00000474564 RGS12O14924 1447 aa13.16□□□□□ -0.3
COL12A1-206ENST00000474564 MRPL50Q8N5N7 158 aaKnown RBP13.16□□□□□ -0.3
COL12A1-206ENST00000474564 NOB1Q9ULX3 412 aaKnown RBP13.16□□□□□ -0.3
COL12A1-206ENST00000474564 SIPA1L3O60292 1781 aaPredicted RBP13.16□□□□□ -0.3
COL12A1-206ENST00000474564 KDM3BQ7LBC6 1761 aa13.16□□□□□ -0.3
COL12A1-206ENST00000474564 DOT1LQ8TEK3 1739 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms