RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 RNMTO43148 476 aaKnown RBP25.31■■□□□ 1.64
PTCD3-210ENST00000473829 PRKRIP1Q9H875 184 aaPredicted RBP25.31■■□□□ 1.64
PTCD3-210ENST00000473829 MAP3K5Q99683 1374 aa25.31■■□□□ 1.64
PTCD3-210ENST00000473829 LOC102724428A0A0B4J2F2 783 aa25.3■■□□□ 1.64
PTCD3-210ENST00000473829 FCHSD2O94868 740 aa25.3■■□□□ 1.64
PTCD3-210ENST00000473829 SIK1P57059 783 aa25.3■■□□□ 1.64
PTCD3-210ENST00000473829 NFATC2IPQ8NCF5 419 aa25.3■■□□□ 1.64
PTCD3-210ENST00000473829 GAS2L2Q8NHY3 880 aa25.3■■□□□ 1.64
PTCD3-210ENST00000473829 ZNF831Q5JPB2 1677 aa25.29■■□□□ 1.64
PTCD3-210ENST00000473829 SIPA1L3O60292 1781 aaPredicted RBP25.28■■□□□ 1.64
PTCD3-210ENST00000473829 SLC52A2Q9HAB3 445 aa25.28■■□□□ 1.64
PTCD3-210ENST00000473829 PNPLA7Q6ZV29 1317 aa25.28■■□□□ 1.64
PTCD3-210ENST00000473829 ITPK1Q13572 414 aa25.27■■□□□ 1.64
PTCD3-210ENST00000473829 SLC4A9Q96Q91 983 aa25.27■■□□□ 1.64
PTCD3-210ENST00000473829 COL5A3P25940 1745 aaPredicted RBP25.26■■□□□ 1.63
PTCD3-210ENST00000473829 UBR3Q6ZT12 1888 aa25.26■■□□□ 1.63
PTCD3-210ENST00000473829 GNAT3A8MTJ3 354 aa25.25■■□□□ 1.63
PTCD3-210ENST00000473829 ZBTB7AO95365 584 aa25.25■■□□□ 1.63
PTCD3-210ENST00000473829 LINC00116Q8NCU8 138 aa25.25■■□□□ 1.63
PTCD3-210ENST00000473829 TFCP2L1Q9NZI6 479 aa25.25■■□□□ 1.63
PTCD3-210ENST00000473829 TJP1Q07157 1748 aa25.25■■□□□ 1.63
PTCD3-210ENST00000473829 DLG5Q8TDM6 1919 aa25.24■■□□□ 1.63
PTCD3-210ENST00000473829 CICQ96RK0 1608 aaPredicted RBP25.24■■□□□ 1.63
PTCD3-210ENST00000473829 IL17REQ8NFR9 667 aa25.24■■□□□ 1.63
PTCD3-210ENST00000473829 ATP6V1AP38606 617 aa25.23■■□□□ 1.63
PTCD3-210ENST00000473829 PLEKHF1Q96S99 279 aa25.23■■□□□ 1.63
PTCD3-210ENST00000473829 RBM42Q9BTD8 480 aaKnown RBP25.23■■□□□ 1.63
PTCD3-210ENST00000473829 UBR2Q8IWV8 1755 aa25.23■■□□□ 1.63
PTCD3-210ENST00000473829 KCPQ6ZWJ8 1503 aa25.22■■□□□ 1.63
PTCD3-210ENST00000473829 AMIGO3Q86WK7 504 aa25.22■■□□□ 1.63
PTCD3-210ENST00000473829 SPON1Q9HCB6 807 aa25.22■■□□□ 1.63
PTCD3-210ENST00000473829 CEMIPQ8WUJ3 1361 aa25.21■■□□□ 1.63
PTCD3-210ENST00000473829 PTCD1O75127 700 aaKnown RBP25.2■■□□□ 1.62
PTCD3-210ENST00000473829 SLC39A6Q13433 755 aa25.2■■□□□ 1.62
PTCD3-210ENST00000473829 ATF5Q9Y2D1 282 aaPredicted RBP25.2■■□□□ 1.62
PTCD3-210ENST00000473829 COL24A1Q17RW2 1714 aa25.2■■□□□ 1.62
PTCD3-210ENST00000473829 SMIM5Q71RC9 77 aa25.18■■□□□ 1.62
PTCD3-210ENST00000473829 COL23A1Q86Y22 540 aaPredicted RBP25.18■■□□□ 1.62
PTCD3-210ENST00000473829 AK7Q96M32 723 aa25.18■■□□□ 1.62
PTCD3-210ENST00000473829 MTFR1LQ9H019 292 aa25.18■■□□□ 1.62
PTCD3-210ENST00000473829 MYH14Q7Z406 1995 aaKnown RBP25.17■■□□□ 1.62
PTCD3-210ENST00000473829 PTGER2P43116 358 aa25.17■■□□□ 1.62
PTCD3-210ENST00000473829 TEFQ10587 303 aa25.15■■□□□ 1.62
PTCD3-210ENST00000473829 DCTN1Q14203 1278 aa25.15■■□□□ 1.62
PTCD3-210ENST00000473829 MCM10Q7L590 875 aa25.15■■□□□ 1.62
PTCD3-210ENST00000473829 SGIP1Q9BQI5 828 aa25.15■■□□□ 1.62
PTCD3-210ENST00000473829 PHF14O94880 888 aa25.13■■□□□ 1.61
PTCD3-210ENST00000473829 HMGB2P26583 209 aaKnown RBP25.13■■□□□ 1.61
PTCD3-210ENST00000473829 GNPATO15228 680 aa25.12■■□□□ 1.61
PTCD3-210ENST00000473829 SLC16A10Q8TF71 515 aa25.12■■□□□ 1.61
PTCD3-210ENST00000473829 CNTNAP4Q9C0A0 1308 aa25.12■■□□□ 1.61
PTCD3-210ENST00000473829 MAPK8IP3Q9UPT6 1336 aa25.12■■□□□ 1.61
PTCD3-210ENST00000473829 MSH5O43196 834 aa25.11■■□□□ 1.61
PTCD3-210ENST00000473829 NEFMP07197 916 aa25.11■■□□□ 1.61
PTCD3-210ENST00000473829 NFE2L2Q16236 605 aa25.11■■□□□ 1.61
PTCD3-210ENST00000473829 RTF1Q92541 710 aaKnown RBP25.11■■□□□ 1.61
PTCD3-210ENST00000473829 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.1■■□□□ 1.61
PTCD3-210ENST00000473829 HTATSF1O43719 755 aaKnown RBP25.1■■□□□ 1.61
PTCD3-210ENST00000473829 CCDC184Q52MB2 194 aa25.1■■□□□ 1.61
PTCD3-210ENST00000473829 DNAJC10Q8IXB1 793 aa25.1■■□□□ 1.61
PTCD3-210ENST00000473829 PNNQ9H307 717 aaKnown RBP25.1■■□□□ 1.61
PTCD3-210ENST00000473829 C4AP0C0L4 1744 aa25.09■■□□□ 1.61
PTCD3-210ENST00000473829 SSFA2P28290 1259 aa25.09■■□□□ 1.61
PTCD3-210ENST00000473829 WDR43Q15061 677 aaKnown RBP eCLIP25.09■■□□□ 1.61
PTCD3-210ENST00000473829 CCDC146Q8IYE0 955 aa25.09■■□□□ 1.61
PTCD3-210ENST00000473829 RC3H1Q5TC82 1133 aaKnown RBP25.08■■□□□ 1.61
PTCD3-210ENST00000473829 ZNF790Q6PG37 636 aa25.08■■□□□ 1.61
PTCD3-210ENST00000473829 FLAD1Q8NFF5 587 aa25.08■■□□□ 1.61
PTCD3-210ENST00000473829 PPP1R1BQ9UD71 204 aaPredicted RBP25.08■■□□□ 1.61
PTCD3-210ENST00000473829 ADAMTS8Q9UP79 889 aa25.08■■□□□ 1.61
PTCD3-210ENST00000473829 KCNQ3O43525 872 aa25.07■■□□□ 1.6
PTCD3-210ENST00000473829 CRKLP46109 303 aaKnown RBP25.07■■□□□ 1.6
PTCD3-210ENST00000473829 MSL1Q68DK7 614 aa25.07■■□□□ 1.6
PTCD3-210ENST00000473829 TTC5Q8N0Z6 440 aa25.07■■□□□ 1.6
PTCD3-210ENST00000473829 ZNF496Q96IT1 587 aaPredicted RBP25.07■■□□□ 1.6
PTCD3-210ENST00000473829 BTBD11A6QL63 1104 aa25.06■■□□□ 1.6
PTCD3-210ENST00000473829 KDM3BQ7LBC6 1761 aa25.05■■□□□ 1.6
PTCD3-210ENST00000473829 THUMPD2Q9BTF0 503 aaKnown RBP25.05■■□□□ 1.6
PTCD3-210ENST00000473829 CYP19A1P11511 503 aaPredicted RBP25.04■■□□□ 1.6
PTCD3-210ENST00000473829 INTS5Q6P9B9 1019 aaKnown RBP25.04■■□□□ 1.6
PTCD3-210ENST00000473829 VSIG10Q8N0Z9 540 aa25.04■■□□□ 1.6
PTCD3-210ENST00000473829 RTCBQ9Y3I0 505 aaKnown RBP25.04■■□□□ 1.6
PTCD3-210ENST00000473829 HEG1Q9ULI3 1381 aa25.04■■□□□ 1.6
PTCD3-210ENST00000473829 ANP32CO43423 234 aa25.03■■□□□ 1.6
PTCD3-210ENST00000473829 RPS6KA4O75676 772 aa25.03■■□□□ 1.6
PTCD3-210ENST00000473829 TMPOP42166 694 aaKnown RBP25.02■■□□□ 1.6
PTCD3-210ENST00000473829 ARXQ96QS3 562 aa25.02■■□□□ 1.6
PTCD3-210ENST00000473829 RRP7AQ9Y3A4 280 aaKnown RBP25.02■■□□□ 1.6
PTCD3-210ENST00000473829 RUNDC1Q96C34 613 aa25.01■■□□□ 1.59
PTCD3-210ENST00000473829 CCDC87Q9NVE4 849 aa25.01■■□□□ 1.59
PTCD3-210ENST00000473829 RIPK4P57078 832 aa25■■□□□ 1.59
PTCD3-210ENST00000473829 ARHGEF1Q92888 912 aaKnown RBP25■■□□□ 1.59
PTCD3-210ENST00000473829 FMNL2Q96PY5 1086 aa25■■□□□ 1.59
PTCD3-210ENST00000473829 POLD1P28340 1107 aa24.99■■□□□ 1.59
PTCD3-210ENST00000473829 TAF7Q15545 349 aaPredicted RBP24.99■■□□□ 1.59
PTCD3-210ENST00000473829 TRAPPC3LQ5T215 181 aa24.99■■□□□ 1.59
PTCD3-210ENST00000473829 FHDC1Q9C0D6 1143 aaPredicted RBP24.99■■□□□ 1.59
PTCD3-210ENST00000473829 MIS18AQ9NYP9 233 aa24.99■■□□□ 1.59
PTCD3-210ENST00000473829 ADRA2BP18089 450 aa24.98■■□□□ 1.59
PTCD3-210ENST00000473829 ZBTB1Q9Y2K1 713 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms