RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 SH3BP5LQ7L8J4 393 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 TRMT44Q8IYL2 757 aaKnown RBP8.19□□□□□ -1.1
RTF1-203ENST00000473214 GIPC2Q8TF65 315 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 CNTNAP3BQ96NU0 1288 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 CNTNAP3Q9BZ76 1288 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 LIMD1Q9UGP4 676 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 LILRB3O75022 631 aa8.18□□□□□ -1.1
RTF1-203ENST00000473214 PTMSP20962 102 aa8.18□□□□□ -1.1
RTF1-203ENST00000473214 ANAPC15P60006 121 aa8.18□□□□□ -1.1
RTF1-203ENST00000473214 MYSM1Q5VVJ2 828 aa8.18□□□□□ -1.1
RTF1-203ENST00000473214 DNAJC14Q6Y2X3 702 aaPredicted RBP8.18□□□□□ -1.1
RTF1-203ENST00000473214 BANK1Q8NDB2 785 aa8.18□□□□□ -1.1
RTF1-203ENST00000473214 RNF225M0QZC1 329 aaPredicted RBP8.17□□□□□ -1.1
RTF1-203ENST00000473214 FSHRP23945 695 aa8.17□□□□□ -1.1
RTF1-203ENST00000473214 NAP1L5Q96NT1 182 aaPredicted RBP8.17□□□□□ -1.1
RTF1-203ENST00000473214 NUTM2BA6NNL0 878 aaPredicted RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 NUTM2EB1AL46 878 aaPredicted RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 MAFGO15525 162 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 SRPK2P78362 688 aaKnown RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 CFAP70Q5T0N1 1121 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 NBPF14Q5TI25 921 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 NUTM2DQ5VT03 806 aaPredicted RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 VASH1Q7L8A9 365 aaPredicted RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 DPH6Q7L8W6 267 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 NUTM2AQ8IVF1 878 aaPredicted RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 TSC1Q92574 1164 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 TSEN34Q9BSV6 310 aaKnown RBP8.16□□□□□ -1.1
RTF1-203ENST00000473214 POLR3EQ9NVU0 708 aa8.16□□□□□ -1.1
RTF1-203ENST00000473214 PEG3Q9GZU2 1588 aa8.15□□□□□ -1.1
RTF1-203ENST00000473214 CENPBP07199 599 aaPredicted RBP8.15□□□□□ -1.1
RTF1-203ENST00000473214 B4GALNT3Q6L9W6 998 aa8.15□□□□□ -1.1
RTF1-203ENST00000473214 EMILIN1Q9Y6C2 1016 aa8.15□□□□□ -1.1
RTF1-203ENST00000473214 TMEM88BA6NKF7 163 aa8.14□□□□□ -1.11
RTF1-203ENST00000473214 ZEB1P37275 1124 aaPredicted RBP8.14□□□□□ -1.11
RTF1-203ENST00000473214 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.14□□□□□ -1.11
RTF1-203ENST00000473214 CYB5RLQ6IPT4 315 aa8.14□□□□□ -1.11
RTF1-203ENST00000473214 CCDC116Q8IYX3 515 aa8.14□□□□□ -1.11
RTF1-203ENST00000473214 CCER1Q8TC90 406 aaPredicted RBP8.14□□□□□ -1.11
RTF1-203ENST00000473214 COL25A1Q9BXS0 654 aaPredicted RBP8.14□□□□□ -1.11
RTF1-203ENST00000473214 PRDM10Q9NQV6 1147 aa8.14□□□□□ -1.11
RTF1-203ENST00000473214 SLC52A1Q9NWF4 448 aa8.14□□□□□ -1.11
RTF1-203ENST00000473214 ARAP1Q96P48 1450 aa8.13□□□□□ -1.11
RTF1-203ENST00000473214 PTSQ03393 145 aa8.13□□□□□ -1.11
RTF1-203ENST00000473214 RTL5Q5HYW3 569 aaPredicted RBP8.13□□□□□ -1.11
RTF1-203ENST00000473214 ZNF385CQ66K41 422 aaPredicted RBP8.13□□□□□ -1.11
RTF1-203ENST00000473214 HELBQ8NG08 1087 aaPredicted RBP8.13□□□□□ -1.11
RTF1-203ENST00000473214 MROH2BQ7Z745 1585 aa8.13□□□□□ -1.11
RTF1-203ENST00000473214 MAGEB6P1A0A0J9YX57 407 aa8.12□□□□□ -1.11
RTF1-203ENST00000473214 TTLL8A6PVC2 850 aa8.12□□□□□ -1.11
RTF1-203ENST00000473214 RFC5P40937 340 aa8.12□□□□□ -1.11
RTF1-203ENST00000473214 HDGFL1Q5TGJ6 251 aa8.12□□□□□ -1.11
RTF1-203ENST00000473214 NANOS1Q8WY41 292 aaKnown RBP8.12□□□□□ -1.11
RTF1-203ENST00000473214 GPKOWQ92917 476 aaPredicted RBP eCLIP8.12□□□□□ -1.11
RTF1-203ENST00000473214 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.12□□□□□ -1.11
RTF1-203ENST00000473214 TMA7Q9Y2S6 64 aaKnown RBP8.12□□□□□ -1.11
RTF1-203ENST00000473214 RNFT1Q5M7Z0 435 aa8.11□□□□□ -1.11
RTF1-203ENST00000473214 SPTY2D1Q68D10 685 aaPredicted RBP8.11□□□□□ -1.11
RTF1-203ENST00000473214 Q6ZVU0 165 aa8.11□□□□□ -1.11
RTF1-203ENST00000473214 MORC4Q8TE76 937 aa8.11□□□□□ -1.11
RTF1-203ENST00000473214 METTL14Q9HCE5 456 aaKnown RBP8.11□□□□□ -1.11
RTF1-203ENST00000473214 PRM3Q9NNZ6 103 aa8.11□□□□□ -1.11
RTF1-203ENST00000473214 URB2Q14146 1524 aaKnown RBP8.11□□□□□ -1.11
RTF1-203ENST00000473214 CEP164Q9UPV0 1460 aa8.11□□□□□ -1.11
RTF1-203ENST00000473214 ZNF608Q9ULD9 1512 aaPredicted RBP8.1□□□□□ -1.11
RTF1-203ENST00000473214 FIGNL2A6NMB9 653 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 IRS1P35568 1242 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 FAM50AQ14320 339 aaKnown RBP8.1□□□□□ -1.11
RTF1-203ENST00000473214 ERFEQ4G0M1 354 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 PPP1R26Q5T8A7 1209 aaPredicted RBP8.1□□□□□ -1.11
RTF1-203ENST00000473214 CCDC181Q5TID7 509 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 GPAT2Q6NUI2 795 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 NOP9Q86U38 636 aaKnown RBP8.1□□□□□ -1.11
RTF1-203ENST00000473214 SVOPQ8N4V2 548 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 MTMR14Q8NCE2 650 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 WHAMMQ8TF30 809 aa8.1□□□□□ -1.11
RTF1-203ENST00000473214 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.1□□□□□ -1.11
RTF1-203ENST00000473214 CDCA7Q9BWT1 371 aaPredicted RBP8.1□□□□□ -1.11
RTF1-203ENST00000473214 FANCD2Q9BXW9 1451 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 SPINT1O43278 529 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 ARHGEF15O94989 841 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 VAMP1P23763 118 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 CCDC155Q8N6L0 562 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 CARD14Q9BXL6 1004 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 PPP1R12CQ9BZL4 782 aa8.09□□□□□ -1.11
RTF1-203ENST00000473214 DNMT3AQ9Y6K1 912 aaPredicted RBP8.09□□□□□ -1.11
RTF1-203ENST00000473214 IGHA1P01876 353 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 SLURP2P0DP57 97 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 CLK2P49760 499 aaKnown RBP8.08□□□□□ -1.12
RTF1-203ENST00000473214 CBLBQ13191 982 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 TMEM259Q4ZIN3 620 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 NOM1Q5C9Z4 860 aaKnown RBP8.08□□□□□ -1.12
RTF1-203ENST00000473214 GPATCH11Q8N954 259 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 PGPEP1Q9NXJ5 209 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 KLHL42Q9P2K6 505 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 TBC1D2BQ9UPU7 963 aa8.08□□□□□ -1.12
RTF1-203ENST00000473214 HMGB1P1B2RPK0 211 aaPredicted RBP8.07□□□□□ -1.12
RTF1-203ENST00000473214 PEX14O75381 377 aa8.07□□□□□ -1.12
RTF1-203ENST00000473214 MCCD1P59942 119 aaPredicted RBP8.07□□□□□ -1.12
RTF1-203ENST00000473214 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
RTF1-203ENST00000473214 PDXDC2PQ6P474 469 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms