RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 KDM6AO15550 1401 aaPredicted RBP16.44■□□□□ 0.22
VPS13D-205ENST00000473099 NUTM2BA6NNL0 878 aaPredicted RBP16.43■□□□□ 0.22
VPS13D-205ENST00000473099 NUTM2EB1AL46 878 aaPredicted RBP16.43■□□□□ 0.22
VPS13D-205ENST00000473099 AAMPQ13685 434 aa16.43■□□□□ 0.22
VPS13D-205ENST00000473099 ZNF772Q68DY9 489 aaPredicted RBP16.43■□□□□ 0.22
VPS13D-205ENST00000473099 NUTM2AQ8IVF1 878 aaPredicted RBP16.43■□□□□ 0.22
VPS13D-205ENST00000473099 C8orf58Q8NAV2 365 aa16.43■□□□□ 0.22
VPS13D-205ENST00000473099 LGR6Q9HBX8 967 aa16.43■□□□□ 0.22
VPS13D-205ENST00000473099 N4BP2Q86UW6 1770 aaPredicted RBP16.42■□□□□ 0.22
VPS13D-205ENST00000473099 HOXB7P09629 217 aa16.42■□□□□ 0.22
VPS13D-205ENST00000473099 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
VPS13D-205ENST00000473099 ARHGAP45Q92619 1136 aa16.42■□□□□ 0.22
VPS13D-205ENST00000473099 FRAT1Q92837 279 aaPredicted RBP16.42■□□□□ 0.22
VPS13D-205ENST00000473099 PAPPAQ13219 1627 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 LAMB4A4D0S4 1761 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 UBR2Q8IWV8 1755 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 BTBD11A6QL63 1104 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 CYP27B1O15528 508 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 BCL2L13Q9BXK5 485 aa16.41■□□□□ 0.22
VPS13D-205ENST00000473099 TOGARAM1Q9Y4F4 1720 aa16.4■□□□□ 0.22
VPS13D-205ENST00000473099 NKX1-1Q15270 411 aaPredicted RBP16.4■□□□□ 0.22
VPS13D-205ENST00000473099 CRBNQ96SW2 442 aa16.4■□□□□ 0.22
VPS13D-205ENST00000473099 SLC52A2Q9HAB3 445 aa16.4■□□□□ 0.22
VPS13D-205ENST00000473099 TNS2Q63HR2 1409 aa16.39■□□□□ 0.21
VPS13D-205ENST00000473099 ATF7IPQ6VMQ6 1270 aa16.39■□□□□ 0.21
VPS13D-205ENST00000473099 PELP1Q8IZL8 1130 aaKnown RBP16.39■□□□□ 0.21
VPS13D-205ENST00000473099 MRPL50Q8N5N7 158 aaKnown RBP16.39■□□□□ 0.21
VPS13D-205ENST00000473099 EXOC6Q8TAG9 804 aa16.39■□□□□ 0.21
VPS13D-205ENST00000473099 MIS18AQ9NYP9 233 aa16.39■□□□□ 0.21
VPS13D-205ENST00000473099 SPATA31A1Q5TZJ5 1347 aa16.39■□□□□ 0.21
VPS13D-205ENST00000473099 ERVV-2B6SEH9 535 aa16.38■□□□□ 0.21
VPS13D-205ENST00000473099 ELL2O00472 640 aaPredicted RBP16.38■□□□□ 0.21
VPS13D-205ENST00000473099 CCDC30Q5VVM6 783 aa16.38■□□□□ 0.21
VPS13D-205ENST00000473099 FTSJ3Q8IY81 847 aaKnown RBP16.38■□□□□ 0.21
VPS13D-205ENST00000473099 DZIP1LQ8IYY4 767 aaKnown RBP16.38■□□□□ 0.21
VPS13D-205ENST00000473099 EIF4A1P60842 406 aaKnown RBP16.37■□□□□ 0.21
VPS13D-205ENST00000473099 C20orf194Q5TEA3 1177 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 UNC5CLQ8IV45 518 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 STK31Q9BXU1 1019 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 USP35Q9P2H5 1018 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 NOB1Q9ULX3 412 aaKnown RBP16.37■□□□□ 0.21
VPS13D-205ENST00000473099 SPATA31A5Q5VU36 1347 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 SPATA31A7Q8IWB4 1347 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 C5P01031 1676 aa16.37■□□□□ 0.21
VPS13D-205ENST00000473099 CABP4P57796 275 aa16.36■□□□□ 0.21
VPS13D-205ENST00000473099 BARGINQ6ZT62 677 aa16.36■□□□□ 0.21
VPS13D-205ENST00000473099 FNBP4Q8N3X1 1017 aaPredicted RBP16.36■□□□□ 0.21
VPS13D-205ENST00000473099 NGLY1Q96IV0 654 aa16.36■□□□□ 0.21
VPS13D-205ENST00000473099 CCDC136Q96JN2 1154 aa16.36■□□□□ 0.21
VPS13D-205ENST00000473099 API5Q9BZZ5 524 aaKnown RBP16.36■□□□□ 0.21
VPS13D-205ENST00000473099 CHMP4BQ9H444 224 aaKnown RBP16.36■□□□□ 0.21
VPS13D-205ENST00000473099 PTPRCP08575 1304 aa16.36■□□□□ 0.21
VPS13D-205ENST00000473099 EXOC5O00471 708 aa16.35■□□□□ 0.21
VPS13D-205ENST00000473099 TRIM27P14373 513 aa16.35■□□□□ 0.21
VPS13D-205ENST00000473099 DOT1LQ8TEK3 1739 aa16.35■□□□□ 0.21
VPS13D-205ENST00000473099 AFF2P51816 1311 aa16.35■□□□□ 0.21
VPS13D-205ENST00000473099 HEG1Q9ULI3 1381 aa16.35■□□□□ 0.21
VPS13D-205ENST00000473099 VPS72Q15906 364 aa16.34■□□□□ 0.21
VPS13D-205ENST00000473099 KRT24Q2M2I5 525 aa16.34■□□□□ 0.21
VPS13D-205ENST00000473099 C8orf37Q96NL8 207 aa16.34■□□□□ 0.21
VPS13D-205ENST00000473099 BCL9LQ86UU0 1499 aa16.34■□□□□ 0.21
VPS13D-205ENST00000473099 MVPQ14764 893 aaKnown RBP16.33■□□□□ 0.2
VPS13D-205ENST00000473099 ZNF790Q6PG37 636 aa16.33■□□□□ 0.2
VPS13D-205ENST00000473099 TTC5Q8N0Z6 440 aa16.33■□□□□ 0.2
VPS13D-205ENST00000473099 NFATC2IPQ8NCF5 419 aa16.33■□□□□ 0.2
VPS13D-205ENST00000473099 DDX54Q8TDD1 881 aaKnown RBP16.33■□□□□ 0.2
VPS13D-205ENST00000473099 PANK1Q8TE04 598 aa16.33■□□□□ 0.2
VPS13D-205ENST00000473099 DDX19BQ9UMR2 479 aa16.33■□□□□ 0.2
VPS13D-205ENST00000473099 RXRBP28702 533 aa16.32■□□□□ 0.2
VPS13D-205ENST00000473099 CCDC9Q9Y3X0 531 aaKnown RBP16.32■□□□□ 0.2
VPS13D-205ENST00000473099 HDGFL1Q5TGJ6 251 aa16.31■□□□□ 0.2
VPS13D-205ENST00000473099 COG6Q9Y2V7 657 aa16.31■□□□□ 0.2
VPS13D-205ENST00000473099 THSD7AQ9UPZ6 1657 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 ABCC4O15439 1325 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 DDB1Q16531 1140 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 B4GALNT3Q6L9W6 998 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 CLUAP1Q96AJ1 413 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 USP21Q9UK80 565 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 GLI3P10071 1580 aa16.3■□□□□ 0.2
VPS13D-205ENST00000473099 GIGYF1O75420 1035 aaPredicted RBP16.29■□□□□ 0.2
VPS13D-205ENST00000473099 RLBP1P12271 317 aa16.29■□□□□ 0.2
VPS13D-205ENST00000473099 FMNL2Q96PY5 1086 aa16.29■□□□□ 0.2
VPS13D-205ENST00000473099 PXDNLA1KZ92 1463 aa16.29■□□□□ 0.2
VPS13D-205ENST00000473099 KCNQ3O43525 872 aa16.28■□□□□ 0.2
VPS13D-205ENST00000473099 TMOD3Q9NYL9 352 aa16.28■□□□□ 0.2
VPS13D-205ENST00000473099 TCERG1O14776 1098 aaKnown RBP16.27■□□□□ 0.2
VPS13D-205ENST00000473099 ITPRIPQ8IWB1 547 aa16.27■□□□□ 0.2
VPS13D-205ENST00000473099 TMEM57Q8N5G2 664 aa16.27■□□□□ 0.2
VPS13D-205ENST00000473099 KCPQ6ZWJ8 1503 aa16.27■□□□□ 0.2
VPS13D-205ENST00000473099 RGS12O14924 1447 aa16.27■□□□□ 0.19
VPS13D-205ENST00000473099 SNRPA1P09661 255 aaKnown RBP16.26■□□□□ 0.19
VPS13D-205ENST00000473099 DBF4Q9UBU7 674 aaPredicted RBP16.26■□□□□ 0.19
VPS13D-205ENST00000473099 TNNQ9UQP3 1299 aa16.26■□□□□ 0.19
VPS13D-205ENST00000473099 EIF2S2P20042 333 aaKnown RBP16.25■□□□□ 0.19
VPS13D-205ENST00000473099 FLIIQ13045 1269 aa16.25■□□□□ 0.19
VPS13D-205ENST00000473099 SLC39A6Q13433 755 aa16.25■□□□□ 0.19
VPS13D-205ENST00000473099 CICQ96RK0 1608 aaPredicted RBP16.25■□□□□ 0.19
VPS13D-205ENST00000473099 SBF2Q86WG5 1849 aa16.24■□□□□ 0.19
VPS13D-205ENST00000473099 ERBB4Q15303 1308 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms