RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 PPP1R1BQ9UD71 204 aaPredicted RBP13.89□□□□□ -0.19
SMARCD3-208ENST00000472789 HNRNPUQ00839 825 aaKnown RBP eCLIP13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 TEFQ10587 303 aa13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 NFE2L2Q16236 605 aa13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 SMARCC1Q92922 1105 aaPredicted RBP13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 RUNDC1Q96C34 613 aa13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 SLC52A2Q9HAB3 445 aa13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 RRP7AQ9Y3A4 280 aaKnown RBP13.88□□□□□ -0.19
SMARCD3-208ENST00000472789 PALLDQ8WX93 1383 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 KCNQ4P56696 695 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 DCTN1Q14203 1278 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 MCM10Q7L590 875 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 CCNL1Q9UK58 526 aaPredicted RBP13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 ASAP1Q9ULH1 1129 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 ITGB4P16144 1822 aa13.87□□□□□ -0.19
SMARCD3-208ENST00000472789 CEP350Q5VT06 3117 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 RIPK4P57078 832 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 PROM2Q8N271 834 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 NGEFQ8N5V2 710 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 IL17REQ8NFR9 667 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 PDGFDQ9GZP0 370 aaPredicted RBP13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 ANO8Q9HCE9 1232 aaPredicted RBP13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 CASZ1Q86V15 1759 aa13.86□□□□□ -0.19
SMARCD3-208ENST00000472789 ATG3Q9NT62 314 aa13.85□□□□□ -0.19
SMARCD3-208ENST00000472789 RGPD3A6NKT7 1758 aaPredicted RBP13.85□□□□□ -0.19
SMARCD3-208ENST00000472789 RGPD4Q7Z3J3 1758 aa13.85□□□□□ -0.19
SMARCD3-208ENST00000472789 SCN11AQ9UI33 1791 aa13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 SENP3-EIF4A1A0A087X0R7 540 aa13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 HTATSF1O43719 755 aaKnown RBP13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 PTCD1O75127 700 aaKnown RBP13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 TMPOP42166 694 aaKnown RBP13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 SLC39A6Q13433 755 aa13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 SLC27A3Q5K4L6 730 aa13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 THUMPD2Q9BTF0 503 aaKnown RBP13.84□□□□□ -0.19
SMARCD3-208ENST00000472789 APAF1O14727 1248 aa13.83□□□□□ -0.2
SMARCD3-208ENST00000472789 LMOD3Q0VAK6 560 aa13.83□□□□□ -0.2
SMARCD3-208ENST00000472789 TTC5Q8N0Z6 440 aa13.83□□□□□ -0.2
SMARCD3-208ENST00000472789 LRRC4BQ9NT99 713 aa13.83□□□□□ -0.2
SMARCD3-208ENST00000472789 STK32BQ9NY57 414 aa13.83□□□□□ -0.2
SMARCD3-208ENST00000472789 LOC102724428A0A0B4J2F2 783 aa13.82□□□□□ -0.2
SMARCD3-208ENST00000472789 ATP6V1AP38606 617 aa13.82□□□□□ -0.2
SMARCD3-208ENST00000472789 SIK1P57059 783 aa13.82□□□□□ -0.2
SMARCD3-208ENST00000472789 DCAF8L1A6NGE4 600 aa13.81□□□□□ -0.2
SMARCD3-208ENST00000472789 BTBD11A6QL63 1104 aa13.81□□□□□ -0.2
SMARCD3-208ENST00000472789 PTGER2P43116 358 aa13.81□□□□□ -0.2
SMARCD3-208ENST00000472789 CEMIPQ8WUJ3 1361 aa13.81□□□□□ -0.2
SMARCD3-208ENST00000472789 MRC1P22897 1456 aa13.8□□□□□ -0.2
SMARCD3-208ENST00000472789 ZBTB7AO95365 584 aa13.8□□□□□ -0.2
SMARCD3-208ENST00000472789 ZBED9Q6R2W3 1325 aa13.8□□□□□ -0.2
SMARCD3-208ENST00000472789 VIRMAQ69YN4 1812 aaKnown RBP13.8□□□□□ -0.2
SMARCD3-208ENST00000472789 MIS18AQ9NYP9 233 aa13.79□□□□□ -0.2
SMARCD3-208ENST00000472789 ADAMTS7Q9UKP4 1686 aa13.79□□□□□ -0.2
SMARCD3-208ENST00000472789 DLG5Q8TDM6 1919 aa13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 HMGB2P26583 209 aaKnown RBP13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 ITPK1Q13572 414 aa13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 TAF7Q15545 349 aaPredicted RBP13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 ZNF790Q6PG37 636 aa13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 TFCP2L1Q9NZI6 479 aa13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 SALL2Q9Y467 1007 aaPredicted RBP13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 LAS1LQ9Y4W2 734 aaKnown RBP13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 LY75O60449 1722 aa13.78□□□□□ -0.2
SMARCD3-208ENST00000472789 KCNQ3O43525 872 aa13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 SLC15A2Q16348 729 aa13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 ZNF827Q17R98 1081 aa13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 ZNF784Q8NCA9 323 aaPredicted RBP13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 AK7Q96M32 723 aa13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 ATF5Q9Y2D1 282 aaPredicted RBP13.77□□□□□ -0.21
SMARCD3-208ENST00000472789 MSH5O43196 834 aa13.76□□□□□ -0.21
SMARCD3-208ENST00000472789 LINC00116Q8NCU8 138 aa13.76□□□□□ -0.21
SMARCD3-208ENST00000472789 ZNF496Q96IT1 587 aaPredicted RBP13.76□□□□□ -0.21
SMARCD3-208ENST00000472789 SLC4A9Q96Q91 983 aa13.76□□□□□ -0.21
SMARCD3-208ENST00000472789 TRIM35Q9UPQ4 493 aa13.76□□□□□ -0.21
SMARCD3-208ENST00000472789 DNAJC10Q8IXB1 793 aa13.75□□□□□ -0.21
SMARCD3-208ENST00000472789 AKT1S1Q96B36 256 aa13.75□□□□□ -0.21
SMARCD3-208ENST00000472789 FMNL2Q96PY5 1086 aa13.75□□□□□ -0.21
SMARCD3-208ENST00000472789 FHDC1Q9C0D6 1143 aaPredicted RBP13.75□□□□□ -0.21
SMARCD3-208ENST00000472789 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
SMARCD3-208ENST00000472789 GNPATO15228 680 aa13.74□□□□□ -0.21
SMARCD3-208ENST00000472789 PHF14O94880 888 aa13.74□□□□□ -0.21
SMARCD3-208ENST00000472789 SGIP1Q9BQI5 828 aa13.74□□□□□ -0.21
SMARCD3-208ENST00000472789 SYT17Q9BSW7 474 aa13.74□□□□□ -0.21
SMARCD3-208ENST00000472789 C5P01031 1676 aa13.73□□□□□ -0.21
SMARCD3-208ENST00000472789 CALD1Q05682 793 aaKnown RBP13.73□□□□□ -0.21
SMARCD3-208ENST00000472789 KCPQ6ZWJ8 1503 aa13.73□□□□□ -0.21
SMARCD3-208ENST00000472789 HEG1Q9ULI3 1381 aa13.72□□□□□ -0.21
SMARCD3-208ENST00000472789 PAPPAQ13219 1627 aa13.72□□□□□ -0.21
SMARCD3-208ENST00000472789 CRKLP46109 303 aaKnown RBP13.72□□□□□ -0.21
SMARCD3-208ENST00000472789 SMIM5Q71RC9 77 aa13.72□□□□□ -0.21
SMARCD3-208ENST00000472789 SIPA1L3O60292 1781 aaPredicted RBP13.72□□□□□ -0.21
SMARCD3-208ENST00000472789 C4BP0C0L5 1744 aa13.71□□□□□ -0.21
SMARCD3-208ENST00000472789 STARD3NLO95772 234 aa13.71□□□□□ -0.21
SMARCD3-208ENST00000472789 CCDC27Q2M243 656 aa13.71□□□□□ -0.21
SMARCD3-208ENST00000472789 VSIG10Q8N0Z9 540 aa13.71□□□□□ -0.21
SMARCD3-208ENST00000472789 RTCBQ9Y3I0 505 aaKnown RBP13.71□□□□□ -0.21
SMARCD3-208ENST00000472789 CHD4Q14839 1912 aa13.7□□□□□ -0.22
SMARCD3-208ENST00000472789 PNPLA7Q6ZV29 1317 aa13.7□□□□□ -0.22
SMARCD3-208ENST00000472789 TAF1LQ8IZX4 1826 aa13.7□□□□□ -0.22
SMARCD3-208ENST00000472789 SNRPA1P09661 255 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms