RNA–Protein interactions for RNA: ENST00000470951.5

SRGAP3-204, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 2,334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-204ENST00000470951 FAM184AQ8NB25 1140 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 INTS4Q96HW7 963 aaKnown RBP13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 PHACTR3Q96KR7 559 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 TSPY26PQ9H489 355 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 BRD1O95696 1058 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 SAFB2Q14151 953 aaKnown RBP eCLIP13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 UVSSAQ2YD98 709 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 PRIMPOLQ96LW4 560 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 OSBPL3Q9H4L5 887 aa13.74□□□□□ -0.21
SRGAP3-204ENST00000470951 RIMS2Q9UQ26 1411 aa13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 HMGN5P82970 282 aaKnown RBP13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 IFNLR1Q8IU57 520 aaPredicted RBP13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 MTMR7Q9Y216 660 aa13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 C3P01024 1663 aa13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 CUL4AQ13619 759 aa13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 MYRIPQ8NFW9 859 aa13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 SENP3Q9H4L4 574 aaPredicted RBP13.73□□□□□ -0.21
SRGAP3-204ENST00000470951 VGLL3A8MV65 326 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 CEP85Q6P2H3 762 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 C8orf58Q8NAV2 365 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 SLC52A1Q9NWF4 448 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 PTMAP06454 111 aaKnown RBP13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 ANAPC15P60006 121 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 C16orf71Q8IYS4 520 aaPredicted RBP13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 TMX3Q96JJ7 454 aa13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 CCDC94Q9BW85 323 aaPredicted RBP13.72□□□□□ -0.21
SRGAP3-204ENST00000470951 MINK1Q8N4C8 1332 aaPredicted RBP13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 TUBGCP6Q96RT7 1819 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 MYO5BQ9ULV0 1848 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 ELL2O00472 640 aaPredicted RBP13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 MMP14P50281 582 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 SLC20A2Q08357 652 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 THUMPD2Q9BTF0 503 aaKnown RBP13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 PTPRCP08575 1304 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.21
SRGAP3-204ENST00000470951 RTL1A6NKG5 1358 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 RGS12O14924 1447 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 HMMRO75330 724 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 MCCP23508 829 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 IL13P35225 146 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 IL17RAQ96F46 866 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 PRAM1Q96QH2 718 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 SSH2Q76I76 1423 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 GTF2F1P35269 517 aaKnown RBP eCLIP13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 IRX3P78415 501 aaPredicted RBP13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 STK26Q9P289 416 aa13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 NSFL1CQ9UNZ2 370 aaKnown RBP13.7□□□□□ -0.22
SRGAP3-204ENST00000470951 KIAA0232Q92628 1395 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 HMOX1P09601 288 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 FOXD4L5Q5VV16 416 aaPredicted RBP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 FOXD4L4Q8WXT5 416 aaPredicted RBP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 CDK19Q9BWU1 502 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 TMEM131LA2VDJ0 1609 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 EPB41L2O43491 1005 aaKnown RBP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 NEK4P51957 841 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 NUTM2DQ5VT03 806 aaPredicted RBP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 OTUD7AQ8TE49 926 aaPredicted RBP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 PIBF1Q8WXW3 757 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 CABP1Q9NZU7 370 aa13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.69□□□□□ -0.22
SRGAP3-204ENST00000470951 DLC1Q96QB1 1528 aa13.68□□□□□ -0.22
SRGAP3-204ENST00000470951 RNF214Q8ND24 703 aa13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 PREX1Q8TCU6 1659 aa13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 EDC4Q6P2E9 1401 aaKnown RBP13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 PDE1AP54750 535 aa13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 IDI1Q13907 227 aa13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 TMEM87AQ8NBN3 555 aa13.67□□□□□ -0.22
SRGAP3-204ENST00000470951 MSH6P52701 1360 aa13.66□□□□□ -0.22
SRGAP3-204ENST00000470951 WDR33Q9C0J8 1336 aaKnown RBP13.66□□□□□ -0.22
SRGAP3-204ENST00000470951 ALKQ9UM73 1620 aa13.66□□□□□ -0.22
SRGAP3-204ENST00000470951 TCHHQ07283 1943 aa13.66□□□□□ -0.22
SRGAP3-204ENST00000470951 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.22
SRGAP3-204ENST00000470951 SMARCA5O60264 1052 aaPredicted RBP13.65□□□□□ -0.22
SRGAP3-204ENST00000470951 DNTTIP2Q5QJE6 756 aaKnown RBP13.65□□□□□ -0.22
SRGAP3-204ENST00000470951 ESYT1Q9BSJ8 1104 aa13.65□□□□□ -0.22
SRGAP3-204ENST00000470951 NOLC1Q14978 699 aaKnown RBP eCLIP13.64□□□□□ -0.23
SRGAP3-204ENST00000470951 SPTLC3Q9NUV7 552 aa13.64□□□□□ -0.23
SRGAP3-204ENST00000470951 TNRQ92752 1358 aa13.64□□□□□ -0.23
SRGAP3-204ENST00000470951 CCDC183Q5T5S1 534 aa13.64□□□□□ -0.23
SRGAP3-204ENST00000470951 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.64□□□□□ -0.23
SRGAP3-204ENST00000470951 SPATA31D1Q6ZQQ2 1576 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 NRKQ7Z2Y5 1582 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 EMILIN1Q9Y6C2 1016 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 CHL1O00533 1208 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 TPM3P06753 285 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 MEIS3Q99687 375 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 SALL3Q9BXA9 1300 aa13.63□□□□□ -0.23
SRGAP3-204ENST00000470951 FKBP5Q13451 457 aaPredicted RBP13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 CHAMP1Q96JM3 812 aa13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 CCT4P50991 539 aaKnown RBP13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 SRCIN1Q9C0H9 1055 aa13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 KIF3AQ9Y496 699 aa13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 MON2Q7Z3U7 1717 aa13.62□□□□□ -0.23
SRGAP3-204ENST00000470951 MX1P20591 662 aa13.61□□□□□ -0.23
SRGAP3-204ENST00000470951 USP48Q86UV5 1035 aa13.61□□□□□ -0.23
SRGAP3-204ENST00000470951 CLGNO14967 610 aa13.61□□□□□ -0.23
SRGAP3-204ENST00000470951 SETD1BQ9UPS6 1966 aaKnown RBP13.61□□□□□ -0.23
SRGAP3-204ENST00000470951 AOX1Q06278 1338 aa13.6□□□□□ -0.23
SRGAP3-204ENST00000470951 FAM83GA6ND36 823 aa13.6□□□□□ -0.23
SRGAP3-204ENST00000470951 APBB1O00213 710 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms