RNA–Protein interactions for RNA: ENST00000470837.1

CCM2-204, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-204ENST00000470837 SMC4Q9NTJ3 1288 aa12.54□□□□□ -0.4
CCM2-204ENST00000470837 SOS1Q07889 1333 aaPredicted RBP12.54□□□□□ -0.4
CCM2-204ENST00000470837 ATRNO75882 1429 aa12.54□□□□□ -0.4
CCM2-204ENST00000470837 RARSP54136 660 aaKnown RBP12.53□□□□□ -0.4
CCM2-204ENST00000470837 SYTL4Q96C24 671 aaPredicted RBP12.53□□□□□ -0.4
CCM2-204ENST00000470837 PKD1L3Q7Z443 1732 aa12.53□□□□□ -0.4
CCM2-204ENST00000470837 KDM6AO15550 1401 aaPredicted RBP12.53□□□□□ -0.4
CCM2-204ENST00000470837 RRP1P56182 461 aaKnown RBP12.52□□□□□ -0.41
CCM2-204ENST00000470837 ALDH1L2Q3SY69 923 aa12.52□□□□□ -0.41
CCM2-204ENST00000470837 C8orf58Q8NAV2 365 aa12.52□□□□□ -0.41
CCM2-204ENST00000470837 STK31Q9BXU1 1019 aa12.52□□□□□ -0.41
CCM2-204ENST00000470837 DLG5Q8TDM6 1919 aa12.52□□□□□ -0.41
CCM2-204ENST00000470837 IPO8O15397 1037 aaKnown RBP12.51□□□□□ -0.41
CCM2-204ENST00000470837 VAMP4O75379 141 aa12.51□□□□□ -0.41
CCM2-204ENST00000470837 HOXB7P09629 217 aa12.51□□□□□ -0.41
CCM2-204ENST00000470837 ZNF790Q6PG37 636 aa12.51□□□□□ -0.41
CCM2-204ENST00000470837 FRAT1Q92837 279 aaPredicted RBP12.51□□□□□ -0.41
CCM2-204ENST00000470837 KIF16BQ96L93 1317 aa12.51□□□□□ -0.41
CCM2-204ENST00000470837 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.51□□□□□ -0.41
CCM2-204ENST00000470837 MS4A1P11836 297 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 EIF4A1P60842 406 aaKnown RBP12.5□□□□□ -0.41
CCM2-204ENST00000470837 RBM6P78332 1123 aaKnown RBP12.5□□□□□ -0.41
CCM2-204ENST00000470837 CCDC30Q5VVM6 783 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 SEPT12Q8IYM1 358 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 TSPYL6Q8N831 410 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 FMNL2Q96PY5 1086 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 BCL2L13Q9BXK5 485 aa12.5□□□□□ -0.41
CCM2-204ENST00000470837 LRRC37A3O60309 1634 aa12.49□□□□□ -0.41
CCM2-204ENST00000470837 BCAR3O75815 825 aa12.49□□□□□ -0.41
CCM2-204ENST00000470837 MARCH10Q8NA82 808 aaPredicted RBP12.49□□□□□ -0.41
CCM2-204ENST00000470837 ONECUT3O60422 494 aaPredicted RBP12.48□□□□□ -0.41
CCM2-204ENST00000470837 RXRBP28702 533 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 PRIM1P49642 420 aaKnown RBP12.48□□□□□ -0.41
CCM2-204ENST00000470837 SLC39A6Q13433 755 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 FKBP8Q14318 412 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 HDGFL1Q5TGJ6 251 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 SSH1Q8WYL5 1049 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 GTF3C3Q9Y5Q9 886 aa12.48□□□□□ -0.41
CCM2-204ENST00000470837 MRC1P22897 1456 aa12.47□□□□□ -0.41
CCM2-204ENST00000470837 RNF123Q5XPI4 1314 aa12.47□□□□□ -0.41
CCM2-204ENST00000470837 KCNQ3O43525 872 aa12.47□□□□□ -0.41
CCM2-204ENST00000470837 SNRPA1P09661 255 aaKnown RBP12.47□□□□□ -0.41
CCM2-204ENST00000470837 EIF2S2P20042 333 aaKnown RBP12.47□□□□□ -0.41
CCM2-204ENST00000470837 KRT24Q2M2I5 525 aa12.47□□□□□ -0.41
CCM2-204ENST00000470837 ZKSCAN2Q63HK3 967 aa12.47□□□□□ -0.41
CCM2-204ENST00000470837 FTSJ3Q8IY81 847 aaKnown RBP12.47□□□□□ -0.41
CCM2-204ENST00000470837 PLIN1O60240 522 aa12.46□□□□□ -0.41
CCM2-204ENST00000470837 IRX6P78412 446 aaPredicted RBP12.46□□□□□ -0.41
CCM2-204ENST00000470837 PIGBQ92521 554 aa12.46□□□□□ -0.41
CCM2-204ENST00000470837 ACSBG1Q96GR2 724 aa12.46□□□□□ -0.41
CCM2-204ENST00000470837 TCERG1O14776 1098 aaKnown RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 PTCD1O75127 700 aaKnown RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 GIGYF1O75420 1035 aaPredicted RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 SLC4A2P04920 1241 aa12.45□□□□□ -0.42
CCM2-204ENST00000470837 ERICH6BQ5W0A0 696 aa12.45□□□□□ -0.42
CCM2-204ENST00000470837 KRT27Q7Z3Y8 459 aa12.45□□□□□ -0.42
CCM2-204ENST00000470837 NECTIN2Q92692 538 aa12.45□□□□□ -0.42
CCM2-204ENST00000470837 SMARCC1Q92922 1105 aaPredicted RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 ZNF496Q96IT1 587 aaPredicted RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 NOB1Q9ULX3 412 aaKnown RBP12.45□□□□□ -0.42
CCM2-204ENST00000470837 ADAMTS7Q9UKP4 1686 aa12.45□□□□□ -0.42
CCM2-204ENST00000470837 BRPF1P55201 1214 aaPredicted RBP12.44□□□□□ -0.42
CCM2-204ENST00000470837 PDE3AQ14432 1141 aa12.44□□□□□ -0.42
CCM2-204ENST00000470837 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
CCM2-204ENST00000470837 RBM42Q9BTD8 480 aaKnown RBP12.44□□□□□ -0.42
CCM2-204ENST00000470837 TEX13AQ9BXU3 409 aaPredicted RBP12.44□□□□□ -0.42
CCM2-204ENST00000470837 DBF4Q9UBU7 674 aaPredicted RBP12.44□□□□□ -0.42
CCM2-204ENST00000470837 WNK3Q9BYP7 1800 aa12.44□□□□□ -0.42
CCM2-204ENST00000470837 GLI3P10071 1580 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 SCN11AQ9UI33 1791 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 ATF7IPQ6VMQ6 1270 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 FAM196AQ6ZSG2 479 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 ARHGAP45Q92619 1136 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 ASAP1Q9ULH1 1129 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 BCL9O00512 1426 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 HEG1Q9ULI3 1381 aa12.43□□□□□ -0.42
CCM2-204ENST00000470837 PTPRCP08575 1304 aa12.42□□□□□ -0.42
CCM2-204ENST00000470837 STARD3NLO95772 234 aa12.42□□□□□ -0.42
CCM2-204ENST00000470837 NPM2Q86SE8 214 aaKnown RBP12.42□□□□□ -0.42
CCM2-204ENST00000470837 DZIP1LQ8IYY4 767 aaKnown RBP12.42□□□□□ -0.42
CCM2-204ENST00000470837 VSIG10Q8N0Z9 540 aa12.42□□□□□ -0.42
CCM2-204ENST00000470837 ATG3Q9NT62 314 aa12.42□□□□□ -0.42
CCM2-204ENST00000470837 CLUAP1Q96AJ1 413 aa12.41□□□□□ -0.42
CCM2-204ENST00000470837 CHMP4BQ9H444 224 aaKnown RBP12.41□□□□□ -0.42
CCM2-204ENST00000470837 HYPKQ9NX55 129 aa12.41□□□□□ -0.42
CCM2-204ENST00000470837 THSD7AQ9UPZ6 1657 aa12.41□□□□□ -0.42
CCM2-204ENST00000470837 SHANK3Q9BYB0 1731 aa12.4□□□□□ -0.42
CCM2-204ENST00000470837 DDX58O95786 925 aaKnown RBP12.4□□□□□ -0.42
CCM2-204ENST00000470837 FKBP5Q13451 457 aaPredicted RBP12.4□□□□□ -0.42
CCM2-204ENST00000470837 CHPF2Q9P2E5 772 aa12.4□□□□□ -0.42
CCM2-204ENST00000470837 ERBB4Q15303 1308 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 KCNQ2O43526 872 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 TRIM27P14373 513 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 HMGB2P26583 209 aaKnown RBP12.39□□□□□ -0.43
CCM2-204ENST00000470837 FLIIQ13045 1269 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 FAM182BQ5T319 152 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 ITPRIPQ8IWB1 547 aa12.39□□□□□ -0.43
CCM2-204ENST00000470837 DDX21Q9NR30 783 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCM2-204ENST00000470837 KDM3BQ7LBC6 1761 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms