RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 MSH6P52701 1360 aa17.21■□□□□ 0.34
GPC1-208ENST00000469694 TERF1P54274 439 aa17.2■□□□□ 0.34
GPC1-208ENST00000469694 CCDC173Q0VFZ6 552 aa17.2■□□□□ 0.34
GPC1-208ENST00000469694 SKOR2Q2VWA4 1001 aaPredicted RBP17.2■□□□□ 0.34
GPC1-208ENST00000469694 PPP1R9BQ96SB3 815 aa17.2■□□□□ 0.34
GPC1-208ENST00000469694 NECTIN2Q92692 538 aa17.2■□□□□ 0.34
GPC1-208ENST00000469694 TNPO1Q92973 898 aaKnown RBP17.2■□□□□ 0.34
GPC1-208ENST00000469694 ZSCAN30Q86W11 494 aa17.19■□□□□ 0.34
GPC1-208ENST00000469694 ZBTB40Q9NUA8 1239 aa17.19■□□□□ 0.34
GPC1-208ENST00000469694 TRPM3Q9HCF6 1732 aaPredicted RBP17.19■□□□□ 0.34
GPC1-208ENST00000469694 LGR6Q9HBX8 967 aa17.18■□□□□ 0.34
GPC1-208ENST00000469694 BRPF1P55201 1214 aaPredicted RBP17.18■□□□□ 0.34
GPC1-208ENST00000469694 CHRNA2Q15822 529 aa17.18■□□□□ 0.34
GPC1-208ENST00000469694 MAP3K5Q99683 1374 aa17.18■□□□□ 0.34
GPC1-208ENST00000469694 GBP4Q96PP9 640 aa17.18■□□□□ 0.34
GPC1-208ENST00000469694 RGPD2P0DJD1 1756 aa17.17■□□□□ 0.34
GPC1-208ENST00000469694 CIZ1Q9ULV3 898 aaPredicted RBP17.17■□□□□ 0.34
GPC1-208ENST00000469694 STRCQ7RTU9 1775 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 SLIT3O75094 1523 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.16■□□□□ 0.34
GPC1-208ENST00000469694 BRINP3Q76B58 766 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 NPHP3Q7Z494 1330 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 SLC4A2P04920 1241 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 PTMSP20962 102 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 SMC5Q8IY18 1101 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 SNX21Q969T3 373 aa17.16■□□□□ 0.34
GPC1-208ENST00000469694 MED1Q15648 1581 aaPredicted RBP17.16■□□□□ 0.34
GPC1-208ENST00000469694 MPRIPQ6WCQ1 1025 aa17.15■□□□□ 0.34
GPC1-208ENST00000469694 MAP7D2Q96T17 732 aa17.15■□□□□ 0.34
GPC1-208ENST00000469694 ZBTB7BO15156 539 aaPredicted RBP17.15■□□□□ 0.34
GPC1-208ENST00000469694 RAB3GAP1Q15042 981 aa17.15■□□□□ 0.34
GPC1-208ENST00000469694 G2E3Q7L622 706 aa17.15■□□□□ 0.34
GPC1-208ENST00000469694 DCCP43146 1447 aa17.15■□□□□ 0.34
GPC1-208ENST00000469694 RBM10P98175 930 aaKnown RBP17.14■□□□□ 0.34
GPC1-208ENST00000469694 ZNF530Q6P9A1 599 aaPredicted RBP17.14■□□□□ 0.34
GPC1-208ENST00000469694 ARHGAP45Q92619 1136 aa17.14■□□□□ 0.34
GPC1-208ENST00000469694 KIF1AQ12756 1690 aa17.14■□□□□ 0.33
GPC1-208ENST00000469694 ABCC4O15439 1325 aa17.14■□□□□ 0.33
GPC1-208ENST00000469694 NASPP49321 788 aaPredicted RBP17.14■□□□□ 0.33
GPC1-208ENST00000469694 KIAA0232Q92628 1395 aa17.14■□□□□ 0.33
GPC1-208ENST00000469694 ERBB3P21860 1342 aa17.13■□□□□ 0.33
GPC1-208ENST00000469694 MSNP26038 577 aaKnown RBP17.13■□□□□ 0.33
GPC1-208ENST00000469694 NLRP2Q9NX02 1062 aa17.13■□□□□ 0.33
GPC1-208ENST00000469694 HTATSF1O43719 755 aaKnown RBP17.12■□□□□ 0.33
GPC1-208ENST00000469694 RBM25P49756 843 aaKnown RBP17.12■□□□□ 0.33
GPC1-208ENST00000469694 SLAIN2Q9P270 581 aa17.12■□□□□ 0.33
GPC1-208ENST00000469694 F6X3S4 739 aa17.12■□□□□ 0.33
GPC1-208ENST00000469694 TAF7Q15545 349 aaPredicted RBP17.12■□□□□ 0.33
GPC1-208ENST00000469694 KCNQ3O43525 872 aa17.11■□□□□ 0.33
GPC1-208ENST00000469694 PXDNQ92626 1479 aa17.11■□□□□ 0.33
GPC1-208ENST00000469694 ANP32BQ92688 251 aaKnown RBP17.11■□□□□ 0.33
GPC1-208ENST00000469694 API5Q9BZZ5 524 aaKnown RBP17.11■□□□□ 0.33
GPC1-208ENST00000469694 XIRP1Q702N8 1843 aaKnown RBP17.11■□□□□ 0.33
GPC1-208ENST00000469694 ALS2Q96Q42 1657 aa17.11■□□□□ 0.33
GPC1-208ENST00000469694 SPATA31A3Q5VYP0 1347 aa17.11■□□□□ 0.33
GPC1-208ENST00000469694 FAM13BQ9NYF5 915 aa17.1■□□□□ 0.33
GPC1-208ENST00000469694 RGS12O14924 1447 aa17.09■□□□□ 0.33
GPC1-208ENST00000469694 TNS3Q68CZ2 1445 aa17.09■□□□□ 0.33
GPC1-208ENST00000469694 CSB-PGBD3P0DP91 1061 aa17.09■□□□□ 0.33
GPC1-208ENST00000469694 HDAC1Q13547 482 aaPredicted RBP17.09■□□□□ 0.33
GPC1-208ENST00000469694 PLEKHO1Q53GL0 409 aaPredicted RBP17.09■□□□□ 0.33
GPC1-208ENST00000469694 SLC4A10Q6U841 1118 aa17.09■□□□□ 0.33
GPC1-208ENST00000469694 RGPD5Q99666 1765 aa17.09■□□□□ 0.33
GPC1-208ENST00000469694 IBTKQ9P2D0 1353 aaPredicted RBP17.09■□□□□ 0.33
GPC1-208ENST00000469694 HSP90AB1P08238 724 aaKnown RBP17.08■□□□□ 0.33
GPC1-208ENST00000469694 HS1BP3Q53T59 392 aa17.08■□□□□ 0.32
GPC1-208ENST00000469694 SIRT2Q8IXJ6 389 aa17.08■□□□□ 0.32
GPC1-208ENST00000469694 R3HCC1Q9Y3T6 440 aaKnown RBP17.08■□□□□ 0.32
GPC1-208ENST00000469694 PHRF1Q9P1Y6 1649 aaKnown RBP17.07■□□□□ 0.32
GPC1-208ENST00000469694 CEMIPQ8WUJ3 1361 aa17.07■□□□□ 0.32
GPC1-208ENST00000469694 HAP1P54257 671 aaPredicted RBP17.07■□□□□ 0.32
GPC1-208ENST00000469694 AKAP4Q5JQC9 854 aa17.07■□□□□ 0.32
GPC1-208ENST00000469694 C1orf141Q5JVX7 400 aa17.07■□□□□ 0.32
GPC1-208ENST00000469694 EIF2S2P20042 333 aaKnown RBP17.07■□□□□ 0.32
GPC1-208ENST00000469694 TEFQ10587 303 aa17.07■□□□□ 0.32
GPC1-208ENST00000469694 LRRC37A3O60309 1634 aa17.06■□□□□ 0.32
GPC1-208ENST00000469694 ZNF500O60304 480 aaPredicted RBP17.06■□□□□ 0.32
GPC1-208ENST00000469694 LNPKQ9C0E8 428 aa17.06■□□□□ 0.32
GPC1-208ENST00000469694 KLHL40Q2TBA0 621 aa17.05■□□□□ 0.32
GPC1-208ENST00000469694 SMAP1Q8IYB5 467 aaPredicted RBP17.05■□□□□ 0.32
GPC1-208ENST00000469694 STK31Q9BXU1 1019 aa17.05■□□□□ 0.32
GPC1-208ENST00000469694 CLEC17AQ6ZS10 378 aa17.05■□□□□ 0.32
GPC1-208ENST00000469694 MEIS3Q99687 375 aa17.05■□□□□ 0.32
GPC1-208ENST00000469694 NOL7Q9UMY1 257 aaKnown RBP17.05■□□□□ 0.32
GPC1-208ENST00000469694 BTBD11A6QL63 1104 aa17.04■□□□□ 0.32
GPC1-208ENST00000469694 AMOTQ4VCS5 1084 aa17.04■□□□□ 0.32
GPC1-208ENST00000469694 INTS3Q68E01 1043 aaKnown RBP17.04■□□□□ 0.32
GPC1-208ENST00000469694 RAPGEF4Q8WZA2 1011 aa17.04■□□□□ 0.32
GPC1-208ENST00000469694 RNMTO43148 476 aaKnown RBP17.04■□□□□ 0.32
GPC1-208ENST00000469694 ANXA1P04083 346 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 FKBP5Q13451 457 aaPredicted RBP17.03■□□□□ 0.32
GPC1-208ENST00000469694 HDGFL1Q5TGJ6 251 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 MTERF4Q7Z6M4 381 aaKnown RBP17.03■□□□□ 0.32
GPC1-208ENST00000469694 GOLGA6L22H0YM25 854 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 FLIIQ13045 1269 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 CCDC30Q5VVM6 783 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 PHAXQ9H814 394 aaKnown RBP17.03■□□□□ 0.32
GPC1-208ENST00000469694 PTPRCP08575 1304 aa17.03■□□□□ 0.32
GPC1-208ENST00000469694 EIF4A1P60842 406 aaKnown RBP17.03■□□□□ 0.32
GPC1-208ENST00000469694 NCAPD2Q15021 1401 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms