RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 LRRN4Q8WUT4 740 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 ZFP42Q96MM3 310 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 RRP7BPQ9NSQ0 103 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 ABCC1P33527 1531 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 KIF15Q9NS87 1388 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 MAP3K4Q9Y6R4 1608 aa8.47□□□□□ -1.05
SYNE1-219ENST00000469439 POGZQ7Z3K3 1410 aa8.46□□□□□ -1.05
SYNE1-219ENST00000469439 MLH3Q9UHC1 1453 aa8.46□□□□□ -1.05
SYNE1-219ENST00000469439 ZIC2O95409 532 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-219ENST00000469439 AFAP1Q8N556 730 aa8.46□□□□□ -1.06
SYNE1-219ENST00000469439 TRIM52Q96A61 297 aa8.46□□□□□ -1.06
SYNE1-219ENST00000469439 ITPKCQ96DU7 683 aa8.46□□□□□ -1.06
SYNE1-219ENST00000469439 ANKRD50Q9ULJ7 1429 aa8.46□□□□□ -1.06
SYNE1-219ENST00000469439 SYCP2Q9BX26 1530 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 SAMD9LQ8IVG5 1584 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 MAST1Q9Y2H9 1570 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 MAGEB6P1A0A0J9YX57 407 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 WIPF1O43516 503 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 FSHRP23945 695 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 ZFAND3Q9H8U3 227 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 CDC42BPBQ9Y5S2 1711 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 ERBINQ96RT1 1412 aa8.45□□□□□ -1.06
SYNE1-219ENST00000469439 DUOX2Q9NRD8 1548 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 ERFEQ4G0M1 354 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 PURBQ96QR8 312 aaKnown RBP8.44□□□□□ -1.06
SYNE1-219ENST00000469439 CARD14Q9BXL6 1004 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 FKBPLQ9UIM3 349 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 DHX29Q7Z478 1369 aaKnown RBP8.44□□□□□ -1.06
SYNE1-219ENST00000469439 RAB3GAP2Q9H2M9 1393 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 NAIPQ13075 1403 aa8.44□□□□□ -1.06
SYNE1-219ENST00000469439 SCARF1Q14162 830 aa8.43□□□□□ -1.06
SYNE1-219ENST00000469439 NR6A1Q15406 480 aa8.43□□□□□ -1.06
SYNE1-219ENST00000469439 PDXDC2PQ6P474 469 aa8.43□□□□□ -1.06
SYNE1-219ENST00000469439 VASH1Q7L8A9 365 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-219ENST00000469439 ESF1Q9H501 851 aaKnown RBP8.43□□□□□ -1.06
SYNE1-219ENST00000469439 NXF1Q9UBU9 619 aaKnown RBP8.43□□□□□ -1.06
SYNE1-219ENST00000469439 TIMELESSQ9UNS1 1208 aa8.43□□□□□ -1.06
SYNE1-219ENST00000469439 ZC3H4Q9UPT8 1303 aaKnown RBP8.43□□□□□ -1.06
SYNE1-219ENST00000469439 TRAPPC8Q9Y2L5 1435 aa8.43□□□□□ -1.06
SYNE1-219ENST00000469439 PLXNC1O60486 1568 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 AP1G2O75843 785 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 RAPGEF3O95398 923 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 NPAS3Q8IXF0 933 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 MEIOBQ8N635 442 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 ARHGAP9Q9BRR9 750 aa8.41□□□□□ -1.06
SYNE1-219ENST00000469439 ATP7AQ04656 1500 aa8.4□□□□□ -1.06
SYNE1-219ENST00000469439 USP17L8P0C7I0 530 aa8.4□□□□□ -1.06
SYNE1-219ENST00000469439 CCDC116Q8IYX3 515 aa8.4□□□□□ -1.06
SYNE1-219ENST00000469439 GOPCQ9HD26 462 aa8.4□□□□□ -1.06
SYNE1-219ENST00000469439 ADGBQ8N7X0 1667 aa8.4□□□□□ -1.07
SYNE1-219ENST00000469439 KDM5CP41229 1560 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 ATP10AO60312 1499 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 A2MP01023 1474 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 PTPRKQ15262 1439 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 NUP155O75694 1391 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 KIF3BO15066 747 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 RFC5P40937 340 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 LINC00528Q8N1L1 170 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 OCSTAMPQ9BR26 566 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 HMX1Q9NP08 348 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-219ENST00000469439 EMILIN1Q9Y6C2 1016 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 HECW2Q9P2P5 1572 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 ZMYM4Q5VZL5 1548 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 ARHGEF12Q9NZN5 1544 aa8.39□□□□□ -1.07
SYNE1-219ENST00000469439 CROCC2H7BZ55 1655 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 H3BM21 787 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 EPS8L1Q8TE68 723 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 SLC16A10Q8TF71 515 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 SLC10A4Q96EP9 437 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 MPHOSPH9Q99550 1183 aa8.38□□□□□ -1.07
SYNE1-219ENST00000469439 SOBPA7XYQ1 873 aa8.37□□□□□ -1.07
SYNE1-219ENST00000469439 PRKCSHP14314 528 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-219ENST00000469439 C6orf118Q5T5N4 469 aa8.37□□□□□ -1.07
SYNE1-219ENST00000469439 CDV3Q9UKY7 258 aaKnown RBP8.37□□□□□ -1.07
SYNE1-219ENST00000469439 GPSM3Q9Y4H4 160 aa8.37□□□□□ -1.07
SYNE1-219ENST00000469439 ZFYVE16Q7Z3T8 1539 aa8.37□□□□□ -1.07
SYNE1-219ENST00000469439 FAM135AQ9P2D6 1515 aa8.37□□□□□ -1.07
SYNE1-219ENST00000469439 ARID4BQ4LE39 1312 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-219ENST00000469439 WASHC2CQ9Y4E1 1318 aa8.36□□□□□ -1.07
SYNE1-219ENST00000469439 INSM1Q01101 510 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-219ENST00000469439 ZBTB33Q86T24 672 aa8.36□□□□□ -1.07
SYNE1-219ENST00000469439 GCC2Q8IWJ2 1684 aa8.36□□□□□ -1.07
SYNE1-219ENST00000469439 INO80Q9ULG1 1556 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-219ENST00000469439 UPP2O95045 317 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 BMP2P12643 396 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 VEGFBP49765 207 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 PTK2Q05397 1052 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 NEUROD2Q15784 382 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 PPP1R26Q5T8A7 1209 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-219ENST00000469439 GGT6Q6P531 493 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 PCMTD1Q96MG8 357 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-219ENST00000469439 KCTD15Q96SI1 283 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-219ENST00000469439 KIF13AQ9H1H9 1805 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 EIF2AK4Q9P2K8 1649 aaKnown RBP8.35□□□□□ -1.07
SYNE1-219ENST00000469439 REREQ9P2R6 1566 aa8.35□□□□□ -1.07
SYNE1-219ENST00000469439 AGLP35573 1532 aa8.34□□□□□ -1.07
SYNE1-219ENST00000469439 PNMA1Q8ND90 353 aa8.34□□□□□ -1.07
SYNE1-219ENST00000469439 ADAM32Q8TC27 787 aa8.34□□□□□ -1.07
SYNE1-219ENST00000469439 IRF7Q92985 503 aa8.34□□□□□ -1.07
SYNE1-219ENST00000469439 CNTLNQ9NXG0 1405 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms