RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 PKD2L1Q9P0L9 805 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 CXXC1Q9P0U4 656 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-209ENST00000467124 SERTAD1Q9UHV2 236 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 ALDH1A1P00352 501 aa6.95□□□□□ -1.3
VPS13A-209ENST00000467124 NR3C2P08235 984 aa6.95□□□□□ -1.3
VPS13A-209ENST00000467124 ZNF358Q9NW07 568 aa6.95□□□□□ -1.3
VPS13A-209ENST00000467124 H3BRB1 525 aa6.94□□□□□ -1.3
VPS13A-209ENST00000467124 GDF9O60383 454 aa6.94□□□□□ -1.3
VPS13A-209ENST00000467124 SCNN1DP51172 638 aa6.94□□□□□ -1.3
VPS13A-209ENST00000467124 GDF10P55107 478 aa6.94□□□□□ -1.3
VPS13A-209ENST00000467124 NAA30Q147X3 362 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-209ENST00000467124 TUT1Q9H6E5 874 aaKnown RBP6.94□□□□□ -1.3
VPS13A-209ENST00000467124 TMEM229AB2RXF0 380 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 INHAP05111 366 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 ADH1AP07327 375 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 FKBP5Q13451 457 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-209ENST00000467124 NOM1Q5C9Z4 860 aaKnown RBP6.93□□□□□ -1.3
VPS13A-209ENST00000467124 TBCELQ5QJ74 424 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 TNS4Q8IZW8 715 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 CYP4X1Q8N118 509 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 COL26A1Q96A83 441 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 TOR4AQ9NXH8 423 aa6.93□□□□□ -1.3
VPS13A-209ENST00000467124 TTC24A2A3L6 582 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-209ENST00000467124 FOXO3O43524 673 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 PTCD1O75127 700 aaKnown RBP6.92□□□□□ -1.3
VPS13A-209ENST00000467124 IGFBP4P22692 258 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 WEE1P30291 646 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 FOXC1Q12948 553 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 Q6ZVU0 165 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 NBPF15Q8N660 670 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 GTF3C2Q8WUA4 911 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-209ENST00000467124 CHMP7Q8WUX9 453 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-209ENST00000467124 SLC4A9Q96Q91 983 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 RAB6BQ9NRW1 208 aa6.92□□□□□ -1.3
VPS13A-209ENST00000467124 EPHA4P54764 986 aa6.91□□□□□ -1.3
VPS13A-209ENST00000467124 MARSP56192 900 aaKnown RBP6.91□□□□□ -1.3
VPS13A-209ENST00000467124 TAS1R3Q7RTX0 852 aa6.91□□□□□ -1.3
VPS13A-209ENST00000467124 SCG3Q8WXD2 468 aaKnown RBP6.91□□□□□ -1.3
VPS13A-209ENST00000467124 ETNK1Q9HBU6 452 aa6.91□□□□□ -1.3
VPS13A-209ENST00000467124 EGFL7Q9UHF1 273 aa6.91□□□□□ -1.3
VPS13A-209ENST00000467124 DNMT3AQ9Y6K1 912 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-209ENST00000467124 UNCXA6NJT0 531 aa6.9□□□□□ -1.3
VPS13A-209ENST00000467124 CLN3Q13286 438 aa6.9□□□□□ -1.3
VPS13A-209ENST00000467124 MTFR1Q15390 333 aa6.9□□□□□ -1.3
VPS13A-209ENST00000467124 GLYCTKQ8IVS8 523 aa6.9□□□□□ -1.3
VPS13A-209ENST00000467124 STAG2Q8N3U4 1231 aa6.9□□□□□ -1.3
VPS13A-209ENST00000467124 KLF16Q9BXK1 252 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-209ENST00000467124 E9PSI1 815 aa6.89□□□□□ -1.31
VPS13A-209ENST00000467124 ZIC2O95409 532 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-209ENST00000467124 WDR4P57081 412 aaKnown RBP6.89□□□□□ -1.31
VPS13A-209ENST00000467124 DNAJC14Q6Y2X3 702 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-209ENST00000467124 TSPAN10Q9H1Z9 355 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-209ENST00000467124 ARHGEF10LQ9HCE6 1279 aa6.89□□□□□ -1.31
VPS13A-209ENST00000467124 TIMP2P16035 220 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 ADD1P35611 737 aaKnown RBP6.88□□□□□ -1.31
VPS13A-209ENST00000467124 FOXK2Q01167 660 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 MEIOBQ8N635 442 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 ITPKCQ96DU7 683 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 XAGE2Q96GT9 111 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 ESYT1Q9BSJ8 1104 aa6.88□□□□□ -1.31
VPS13A-209ENST00000467124 SCHIP1Q9P0W5 487 aaPredicted RBP6.88□□□□□ -1.31
VPS13A-209ENST00000467124 A6NJY4 79 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 J3QL48 77 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 ICMTO60725 284 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 SMPD1P17405 629 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 GPC1P35052 558 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 PTGIRP43119 386 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 SMTNP53814 917 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 TRIM67Q6ZTA4 783 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.87□□□□□ -1.316e-6■■■■■ 48.1
VPS13A-209ENST00000467124 CHMP3Q9Y3E7 222 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 HRH3Q9Y5N1 445 aa6.87□□□□□ -1.31
VPS13A-209ENST00000467124 ATAD2Q6PL18 1390 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 ANKRD33BA6NCL7 494 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 TNFRSF10AO00220 468 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 CDK2AP1O14519 115 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 C21orf2O43822 256 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 IL2RAP01589 272 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 MAPK1P28482 360 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 HIRAP54198 1017 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-209ENST00000467124 PSMA6P60900 246 aaKnown RBP6.86□□□□□ -1.31
VPS13A-209ENST00000467124 TLR1Q15399 786 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 POTEAQ6S8J7 498 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 CNKSR1Q969H4 720 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 SAP130Q9H0E3 1048 aa6.86□□□□□ -1.31
VPS13A-209ENST00000467124 A0A1W2PRU2 124 aa6.85□□□□□ -1.31
VPS13A-209ENST00000467124 PPP1R12BO60237 982 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-209ENST00000467124 TAGLNQ01995 201 aaKnown RBP6.85□□□□□ -1.31
VPS13A-209ENST00000467124 CBLBQ13191 982 aa6.85□□□□□ -1.31
VPS13A-209ENST00000467124 SF3B2Q13435 895 aaKnown RBP6.85□□□□□ -1.31
VPS13A-209ENST00000467124 KDF1Q8NAX2 398 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-209ENST00000467124 VTI1AQ96AJ9 217 aa6.85□□□□□ -1.31
VPS13A-209ENST00000467124 TSEN34Q9BSV6 310 aaKnown RBP6.85□□□□□ -1.31
VPS13A-209ENST00000467124 USP3Q9Y6I4 520 aa6.85□□□□□ -1.31
VPS13A-209ENST00000467124 UPP2O95045 317 aa6.84□□□□□ -1.31
VPS13A-209ENST00000467124 FKBP4Q02790 459 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS13A-209ENST00000467124 ECM1Q16610 540 aa6.84□□□□□ -1.31
VPS13A-209ENST00000467124 SLC9A9Q8IVB4 645 aa6.84□□□□□ -1.31
VPS13A-209ENST00000467124 GIPC2Q8TF65 315 aa6.84□□□□□ -1.31
VPS13A-209ENST00000467124 NLRP3Q96P20 1036 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms